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2024-05-23 18:40:20

Gene list

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COG category: Intracellular trafficking and secretion

Number of genes found: 3483

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Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
clpP BU475 ATP-dependent Clp protease proteolytic subunitchromosome CDS519898 627 + 0.291866
ffh BU393 signal recognition particle proteinchromosome CDS431883 1356 + 0.259587
flhA BU241 flagellar biosynthetic protein FlhAchromosome CDS269674 2091 + 0.288857
flhB BU240 flagellar biosynthetic protein FlhBchromosome CDS268530 1152 + 0.265625
fliE BU072 flagellar hook-basal body complex protein FliEchromosome CDS76514 297 - 0.222222
fliF BU073 flagellar M-ring proteinchromosome CDS77074 1638 + 0.2558
fliH BU075 flagellar assembly protein FliHchromosome CDS79696 663 + 0.227753
fliI BU076 flagellum-specific ATP synthasechromosome CDS80316 1404 + 0.297009
fliN BU081 flagellar motor switch protein FliNchromosome CDS84332 402 + 0.223881
fliP BU082 flagellar biosynthetic protein FliPchromosome CDS84745 1140 + 0.273684
fliQ BU083 flagellar biosynthetic protein FliQchromosome CDS85956 270 + 0.27037
fliR BU084 flagellar biosynthetic protein FliRchromosome CDS86225 777 + 0.229086
ftsY BU024 cell division protein FtsYchromosome CDS23651 1137 + 0.25066
lepB BU259 signal peptidase Ichromosome CDS283520 945 - 0.244444
lspA BU148 lipoprotein signal peptidasechromosome CDS156163 483 - 0.252588
secA BU201 translocasechromosome CDS218774 2628 + 0.272831
secB BU053 protein-export protein SecBchromosome CDS57475 429 + 0.251748
secE BU040 preprotein translocase SecE subunitchromosome CDS47791 384 - 0.229167
secY BU504 preprotein translocase SecYchromosome CDS549700 1314 - 0.283866
sohB BU283 possible protease SohBchromosome CDS308348 1011 + 0.254204
yajC BU134 hypothetical proteinchromosome CDS139801 336 + 0.255952
ychE BU267 hypothetical proteinchromosome CDS293524 648 + 0.25463
yhgN BU449 hypothetical proteinchromosome CDS490011 591 + 0.28934
yidC BU015 60 kDa inner-membrane proteinchromosome CDS15011 1599 + 0.268293
 
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
clpP bbp419 ATP-dependent Clp protease proteolytic subunitchromosome CDS489272 618 + 0.289644
ffh bbp356 signal recognition particle proteinchromosome CDS413493 1353 + 0.25425
flhA bbp223 flagellar biosynthesis protein FlhAchromosome CDS262535 2109 + 0.279279
flhB bbp222 flagellar biosynthetic protein FlhBchromosome CDS261394 1149 + 0.245431
fliE bbp067 flagellar hook-basal body complex protein FliEchromosome CDS75190 303 - 0.214521
fliF bbp068 flagellar M-ring proteinchromosome CDS75688 1668 + 0.254197
fliH bbp070 Flagellar assembly protein FliHchromosome CDS78353 678 + 0.246313
fliI bbp071 flagellum-specific ATP synthasechromosome CDS79027 1365 + 0.302564
fliN bbp075 flagellar motor switch protein FliNchromosome CDS83070 405 + 0.234568
fliOP bbp076 flagellar biosynthetic protein FliPchromosome CDS83536 1083 + 0.281625
fliQ bbp077 flagellar biosynthetic protein FliQchromosome CDS84702 273 + 0.263736
fliR bbp078 flagellar biosynthetic protein FliRchromosome CDS84974 774 + 0.222222
ftsY bbp026 FtsY proteichromosome CDS25316 1194 + 0.262144
lepB bbp240 signal peptidase Ichromosome CDS275957 933 - 0.23687
lspA bbp138 lipoprotein signal peptidasechromosome CDS152995 492 - 0.231707
secA bbp187 translocasechromosome CDS214226 2553 + 0.278104
secE bbp041 preprotein translocase SecE subunitchromosome CDS49873 384 - 0.242188
secY bbp447 preprotein translocase SecYchromosome CDS518944 1326 - 0.27451
sohB bbp263 putative protease SohBchromosome CDS301540 1050 + 0.24
yajC bbp125 putative membrane protein YajCchromosome CDS137603 348 + 0.241379
ychE bbp248 hypothetical proteinchromosome CDS286404 648 + 0.260802
yhgN bbp399 hypothetical proteinchromosome CDS463056 600 + 0.27
yidC bbp016 hypothetical proteinchromosome CDS15650 1611 + 0.252638
 
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
clpP BUsg459 ATP-dependent Clp protease proteolytic subunitchromosome CDS521153 594 + 0.291246
ffh BUsg380 signal recognition particle proteinchromosome CDS432204 1353 + 0.257206
flhA BUsg236 flagellar protein FlhAchromosome CDS271187 2106 + 0.279202
flhB BUsg235 flagellar biosynthetic protein FlhBchromosome CDS270067 1146 + 0.255672
fliE BUsg066 flagellar hook-basal body complex protein FliEchromosome CDS77072 306 - 0.179739
fliF BUsg067 flagellar M-ring proteinchromosome CDS77554 1671 + 0.239976
fliH BUsg069 flagellar assembly protein FliHchromosome CDS80209 666 + 0.1997
fliI BUsg070 flagellum-specific ATP synthasechromosome CDS80868 1368 + 0.303363
fliJ BUsg071 flagellar FliJ proteinchromosome CDS82270 459 + 0.163399
fliN BUsg074 flagellar motor switch protein FliNchromosome CDS84923 402 + 0.186567
fliP BUsg075 flagellar biosynthetic protein FliPchromosome CDS85330 1140 + 0.254386
fliQ BUsg076 flagellar biosynthetic protein FliQchromosome CDS86513 273 + 0.300366
fliR BUsg077 flagellar biosynthetic protein FliRchromosome CDS86785 777 + 0.212355
ftsY BUsg025 cell division protein FtsYchromosome CDS24003 1056 + 0.25
lepB BUsg250 signal peptidase Ichromosome CDS284909 939 - 0.224707
lspA BUsg141 lipoprotein signal peptidasechromosome CDS156895 471 - 0.203822
secA BUsg195 translocasechromosome CDS219583 2625 + 0.26781
secB BUsg050 protein-export protein SecBchromosome CDS57569 465 + 0.225806
secE BUsg041 preprotein translocase SecE subunitchromosome CDS47894 384 - 0.231771
secY BUsg485 preprotein translocase SecYchromosome CDS550561 1320 - 0.266667
sohB BUsg272 putative protease SohBchromosome CDS308452 1029 + 0.229349
yajC BUsg126 hypothetical 11.9 kDa proteinchromosome CDS140289 333 + 0.27027
ychE BUsg257 hypothetical 23.5 kDa proteinchromosome CDS294273 636 + 0.268868
yhgN BUsg434 hypothetical 21.5 kDa proteinchromosome CDS491313 591 + 0.275804
yidC BUsg016 inner membrane proteinchromosome CDS14917 1614 + 0.262082
 
Candidatus Blochmannia floridanus
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
clpP Bfl246 ATP-dependent Clp protease proteolytic subunitchromosome CDS262722 630 + 0.309524
ffh Bfl172 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNAchromosome CDS205013 1374 + 0.260553
ftsY Bfl627 cell division protein FtsYchromosome CDS700163 927 - 0.270766
lepB Bfl541 signal peptidase Ichromosome CDS603503 999 - 0.255255
lspA Bfl119 lipoprotein signal peptidasechromosome CDS135013 462 + 0.255411
secA Bfl148 translocasechromosome CDS171410 2523 + 0.302021
secD Bfl232 protein-export membrane protein SecDchromosome CDS245653 1875 + 0.260267
secE Bfl563 preprotein translocase SecE subunitchromosome CDS631930 375 - 0.298667
secF Bfl233 protein-export membrane protein SecFchromosome CDS247568 903 + 0.231451
secY Bfl211 preprotein translocase SecYchromosome CDS230690 1356 + 0.291298
sppA Bfl436 protease IV, a signal peptide peptidasechromosome CDS478172 1878 + 0.283813
tolB Bfl338 tolB protein precursorchromosome CDS374679 1383 + 0.276934
tolQ Bfl335 TolQ proteinchromosome CDS372131 750 + 0.252
tolR Bfl336 tolR proteinchromosome CDS372843 429 + 0.226107
yajC Bfl231 preprotein translocase YajC subunitchromosome CDS245301 348 + 0.258621
yhgN Bfl575 putative inner membrane proteinchromosome CDS645579 594 + 0.289562
yidC Bfl012 putative Preprotein translocase subunit YidCchromosome CDS12064 1677 - 0.25164
 
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
clpP BPEN_253 ATP-dependent Clp protease proteolytic subunitchromosome CDS287418 627 + 0.333333
ffh BPEN_178 4.5S-RNP proteinchromosome CDS225699 1362 + 0.285609
ftsY BPEN_654 cell division proteinchromosome CDS785572 927 - 0.289105
hflK BPEN_084 HflKchromosome CDS99260 1296 + 0.330247
lepB BPEN_561 signal peptidase Ichromosome CDS670628 996 - 0.289157
lspA BPEN_123 prolipoprotein signal peptidasechromosome CDS148935 498 + 0.263052
secA BPEN_152 translocasechromosome CDS186811 2736 + 0.305556
secB BPEN_627 molecular chaperone in protein exportchromosome CDS750237 465 - 0.309677
secD BPEN_238 preprotein translocase, auxillary membrane componentchromosome CDS268103 1860 + 0.289785
secE BPEN_583 preprotein translocase, membrane componentchromosome CDS700393 348 - 0.321839
secF BPEN_239 preprotein translocase, auxillary membrane componentchromosome CDS270024 918 + 0.276688
secY BPEN_218 preprotein translocase, membrane componentchromosome CDS252382 1338 + 0.328102
sppA BPEN_450 protease IVchromosome CDS534585 1878 + 0.29819
tolB BPEN_348 TolBchromosome CDS411950 1362 + 0.315712
tolQ BPEN_345 TolQchromosome CDS409499 750 + 0.294667
tolR BPEN_346 TolRchromosome CDS410217 426 + 0.288732
yajC BPEN_237 preprotein translocase, auxillary membrane componentchromosome CDS267721 348 + 0.336207
yhgN BPEN_595 putative integral membrane proteinchromosome CDS715520 594 + 0.289562
yidCD BPEN_012 hypothetical proteinchromosome CDS12400 1917 - 0.28795
 
Enterobacteria phage Fels-2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STM4575 putative outer membrane proteinchromosome CDS4830411 690 - 0.466667
NA STM3691 putative inner membrane proteinchromosome CDS3881228 4386 + 0.527816
NA STM0350.S outer membrane efflux-like proteinchromosome CDS392419 1458 - 0.591907
NA STM2690 putative outer membrane efflux proteinchromosome CDS2839118 1410 + 0.568794
NA STM2787 tricarboxylic transportchromosome CDS2935579 435 + 0.57931
NA STM0307 VirG-like proteinchromosome CDS350943 408 - 0.470588
NA STM4259 putative ABC exporter outer membrane componentchromosome CDS4479864 1320 + 0.367424
NA STM2605 head-tail preconnector-like proteinchromosome CDS2752336 1497 - 0.565798
NA STM4258 putative methyl-accepting chemotaxis proteinchromosome CDS4478486 1389 + 0.367891
NA STM4595 putative fimbrial chaparonechromosome CDS4852849 546 - 0.501832
NA STM1033 Clp protease-like proteinchromosome CDS1120666 2082 + 0.524976
NA STM2706 phage tail-like proteinchromosome CDS2853995 1575 - 0.524444
NA STM0912 ATP-dependent proteasechromosome CDS983263 2187 + 0.576589
bcfA STM0021 fimbrial subunitchromosome CDS24469 543 + 0.517495
bcfB STM0022 fimbrial chaparonechromosome CDS25112 687 + 0.509461
bcfC STM0023 fimbrial usherchromosome CDS25803 2622 + 0.544622
bcfD STM0024 fimbrial subunitchromosome CDS28425 1008 + 0.500992
bcfE STM0025 fimbrial subunitchromosome CDS29433 546 + 0.494505
bcfF STM0026 fimbrial subunitchromosome CDS29994 519 + 0.55684
bcfG STM0027 fimbrial chaparonechromosome CDS30478 732 + 0.539617
bigA STM3478 putative surface-exposed virulence proteinchromosome CDS3629167 5862 + 0.573524
ccmD STM3816 heme exporter protein Cchromosome CDS4016319 213 - 0.694836
ccmD STM2251 heme exporter protein Cchromosome CDS2351391 213 - 0.694836
clpP STM0448 ATP-dependent Clp protease proteolytic subunitchromosome CDS503210 624 + 0.512821
cpxP STM4060 periplasmic repressorchromosome CDS4270595 501 + 0.506986
exbB STM3159 energy transduction proteinchromosome CDS3320009 735 - 0.556463
exbD STM3158 energy transduction proteinchromosome CDS3319577 426 - 0.507042
ffh STM2677 4.5S-RNP proteinchromosome CDS2817202 1362 - 0.549927
fimA STM0543 fimbrinchromosome CDS604130 543 + 0.552486
fimC STM0545 periplasmic chaperonechromosome CDS605325 693 + 0.503608
fimD STM0546 outer membrane usher protein precursorchromosome CDS606048 2613 + 0.556831
fimF STM0548 putative fimbrial proteinchromosome CDS609692 519 + 0.55106
fimH STM0547 minor fimbrial subunitchromosome CDS608675 1008 + 0.516865
fimI STM0544 fimbrial proteinchromosome CDS604748 534 + 0.541198
flgM STM1172 anti-FliA factorchromosome CDS1257046 294 - 0.517007
flgN STM1171 putative FlgK/FlgL export chaperonechromosome CDS1256619 423 - 0.536643
flhA STM1913 flagellar biosynthesis proteinchromosome CDS2008212 2079 - 0.559885
flhB STM1914 flagellar biosynthesis proteinchromosome CDS2010283 1152 - 0.559028
fliE STM1968 flagellar basal body proteinchromosome CDS2056008 315 - 0.568254
fliF STM1969 flagellar M-ring proteinchromosome CDS2056539 1683 + 0.571598
fliH STM1971 flagellar assembly proteinchromosome CDS2059202 708 + 0.60452
fliI STM1972 flagellum-specific ATP synthasechromosome CDS2059909 1371 + 0.60248
fliJ STM1973 flagellar proteinchromosome CDS2061301 444 + 0.513514
fliN STM1977 flagellar motor switch proteinchromosome CDS2064536 414 + 0.548309
fliP STM1979 flagellar biosynthesis proteinchromosome CDS2065326 738 + 0.536585
fliQ STM1980 flagellar biosynthesis proteinchromosome CDS2066073 270 + 0.518519
fliR STM1981 flagellar biosynthesis proteinchromosome CDS2066351 795 + 0.515723
fliS STM1961 flagellar protein FliSchromosome CDS2050820 408 + 0.5
ftsY STM3571 cell division membrane proteinchromosome CDS3738746 1476 - 0.550135
hofB STM0143 putative type IV fimbrial biosynthetic proteinchromosome CDS166319 1386 - 0.554834
hofC STM0142 putative type IV pilin assembly proteinchromosome CDS165127 1203 - 0.544472
hofQ STM3488 putative type IV pilin assembly proteinchromosome CDS3643213 1239 - 0.563358
hopD STM3442 leader peptidase HopDchromosome CDS3596910 468 + 0.529915
invA STM2896 needle complex export proteinchromosome CDS3038400 2058 - 0.455782
invC STM2894 type III secretion system ATPasechromosome CDS3036677 1296 - 0.542438
invG STM2898 outer membrane secretin precursorchromosome CDS3041597 1689 - 0.46418
lepB STM2582 signal peptidase Ichromosome CDS2725781 975 - 0.531282
lpfA STM3640 long polar fimbrial protein A precursorchromosome CDS3827449 537 - 0.463687
lpfB STM3639 long polar fimbrial chaperone precursorchromosome CDS3826666 699 - 0.447783
lpfC STM3638 long polar fimbrial outer membrane usher proteinchromosome CDS3824115 2529 - 0.553578
lpfE STM3636 long polar fimbrial minor proteinchromosome CDS3822485 528 - 0.511364
lspA STM0047 signal peptidase IIchromosome CDS56689 501 + 0.528942
marC STM1521 multiple antibiotic resistance transporterchromosome CDS1598190 666 + 0.534535
misL STM3757 putative autotransporterchromosome CDS3954761 2868 + 0.530683
orgB STM2869 needle complex export proteinchromosome CDS3013788 681 - 0.450808
ppdB STM2999 prepilin peptidase-dependent protein Bchromosome CDS3156808 564 - 0.542553
ppdD STM0144 putative type IV pilin major componentchromosome CDS167714 438 - 0.53653
prgK STM2871 needle complex inner membrane lipoproteinchromosome CDS3014996 759 - 0.457181
safB STM0300 putative fimbrial assembly chaparonechromosome CDS342829 714 + 0.488796
safC STM0301 putative fimbrial usherchromosome CDS343566 2511 + 0.546794
secA STM0136 translocasechromosome CDS158689 2706 + 0.538803
secB STM3701 export protein SecBchromosome CDS3896036 468 - 0.510684
secD STM0407 protein export protein SecDchromosome CDS462331 1848 + 0.544913
secE STM4147 translocasechromosome CDS4362017 384 + 0.554688
secF STM0408 protein export protein SecFchromosome CDS464189 972 + 0.542181
secG STM3293 protein-export membrane proteinchromosome CDS3461852 333 - 0.513514
secY STM3420 preprotein translocase SecYchromosome CDS3586027 1332 - 0.496997
shdA STM2513 AIDA autotransporter-like proteinchromosome CDS2627589 6120 - 0.580719
sipC STM2884 translocation machinery componentchromosome CDS3027857 1230 - 0.477236
smf STM3405 putative competence proteinchromosome CDS3575680 1125 - 0.541333
sohB STM1716 putative peptidasechromosome CDS1813085 1047 - 0.540592
spaO STM2891 type III secretion proteinchromosome CDS3034335 912 - 0.527412
spaP STM2890 needle complex export proteinchromosome CDS3033671 675 - 0.414815
spaQ STM2889 needle complex export proteinchromosome CDS3033385 261 - 0.467433
spaR STM2888 needle complex export proteinchromosome CDS3032590 792 - 0.493687
spaS STM2887 type III secretion proteinchromosome CDS3031533 1071 - 0.43324
sppA STM1295 protease IVchromosome CDS1372910 1857 - 0.557889
spy STM1308 putative stress response proteinchromosome CDS1388557 486 + 0.5
ssaC STM1394 outer membrane secretin precursorchromosome CDS1480402 1494 + 0.423025
ssaJ STM1409 needle complex inner membrane lipoproteinchromosome CDS1490277 750 + 0.42
ssaN STM1415 type III secretion system ATPasechromosome CDS1495691 1302 + 0.512289
ssaQ STM1418 type III secretion proteinchromosome CDS1497708 969 + 0.46646
ssaR STM1419 needle complex export proteinchromosome CDS1498744 648 + 0.429012
ssaS STM1420 type III secretion system apparatus proteinchromosome CDS1499388 267 + 0.419476
ssaT STM1421 type III secretion system apparatus proteinchromosome CDS1499655 780 + 0.389744
ssaU STM1422 type III secretion system apparatus proteinchromosome CDS1500431 1059 + 0.396601
ssaV STM1414 type III secretion system apparatus proteinchromosome CDS1493656 2046 + 0.465298
sseA STM1397 secretion system chaperone proteinchromosome CDS1483601 327 + 0.406728
stbA STM0340 putative fimbrial major subunitchromosome CDS384403 537 - 0.471136
stbB STM0339 putative fimbrial chaperonechromosome CDS383580 762 - 0.454068
stbC STM0338 putative fimbrial usherchromosome CDS381035 2562 - 0.539422
stbE STM0336 putative fimbrial chaparonechromosome CDS378981 759 - 0.476943
stcB STM2151 putative periplasmic chaperone proteinchromosome CDS2246358 684 - 0.402047
stcC STM2150 putative outer membrane proteinchromosome CDS2243855 2490 - 0.457831
stdA STM3029.S putative fimbrial-like proteinchromosome CDS3191120 561 - 0.527629
stdB STM3028 putative outer membrane usher proteinchromosome CDS3188511 2490 - 0.607229
stdC STM3027 putative fimbrial chaparonechromosome CDS3187727 744 - 0.58871
stfA STM0195 putative fimbrial subunitchromosome CDS230657 561 + 0.520499
stfC STM0196 putative fimbrial outer membrane usherchromosome CDS231303 2658 + 0.549661
stfD STM0197 putative periplasmic fimbrial chaperonechromosome CDS233978 753 + 0.541833
stfE STM0198 putative minor fimbrial subunitchromosome CDS234749 513 + 0.559454
sthA STM4594 putative fimbrial chaparonechromosome CDS4852095 684 - 0.461988
sthB STM4593 putative fimbrial usher proteinchromosome CDS4849512 2538 - 0.472025
sthD STM4592 putative fimbrial subunitchromosome CDS4848937 558 - 0.505376
sthE STM4591 putative major fimbrial subunitchromosome CDS4847811 1086 - 0.524862
stiA STM0177 putative fimbrial subunitchromosome CDS208383 540 - 0.524074
stiB STM0176 putative fimbrial chaparonechromosome CDS207652 684 - 0.530702
stiC STM0175 putativie fimbrial usherchromosome CDS205079 2547 - 0.553592
stiH STM0174 putative fimbrial protein precurosrchromosome CDS203991 1080 - 0.526852
stjB STM4572 putative fimbrial usher proteinchromosome CDS4826467 2409 - 0.493566
stjC STM4573 putative fimbrial chaparonechromosome CDS4828889 708 - 0.456215
tatA STM3973 twin argininte translocase protein Achromosome CDS4180504 255 + 0.454902
tatB STM3974 sec-independent translocasechromosome CDS4180762 549 + 0.542805
tatC STM3975 Sec-independent protein secretion pathway componentchromosome CDS4181313 780 + 0.502564
tatE STM0632 twin argininte translocase protein Achromosome CDS694573 204 + 0.495098
tolB STM0748 translocation protein TolB precursorchromosome CDS815964 1293 + 0.556845
tolC STM3186 outer membrane channel precursor proteinchromosome CDS3348567 1476 + 0.520325
tolQ STM0745 Tol import system inner membrane proteinchromosome CDS813428 693 + 0.52381
tolR STM0746 Tol import sytem inner membrane proteinchromosome CDS814124 429 + 0.51049
yajC STM0406 preprotein translocase subunit YajCchromosome CDS461971 333 + 0.51952
ybbJ STM0500 hypothetical proteinchromosome CDS560973 453 - 0.607064
ychE STM1748 putative integral membrane proteinchromosome CDS1842004 648 - 0.506173
yggR STM3099 twitching motility proteinchromosome CDS3259946 981 - 0.572885
yidC STM3842 inner membrane protein translocase component YidCchromosome CDS4046425 1647 + 0.544019
yohG STM2172 putative outer membrane efflux proteinchromosome CDS2268829 1437 - 0.576896
yrfC STM3491 putative inner membrane proteinchromosome CDS3645214 540 - 0.592593
 
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA0942 putative outer membrane usher proteinchromosome CDS1054808 2493 - 0.519856
NA ECA0799 putative outer membrane proteinchromosome CDS873754 9687 + 0.552906
NA ECA4405 hypothetical proteinchromosome CDS4943487 1287 - 0.554779
NA ECA1099 large repetitive proteinchromosome CDS1231301 10848 - 0.560103
NA ECA0788 hypothetical proteinchromosome CDS861960 945 + 0.555556
NA ECA1668 putative type IV prepilinchromosome CDS1916388 1593 + 0.453861
NA ECA0794 putative type IV pilus proteinchromosome CDS868800 960 + 0.585417
NA ECA3703 conserved hypothetical phage-related proteinchromosome CDS4147596 1152 - 0.529514
NA ECA0658 hypothetical proteinchromosome CDS731959 489 + 0.498978
NA ECA0573 putative plasmid-related proteinchromosome CDS635349 2862 + 0.510482
NA ECA0791 hypothetical proteinchromosome CDS865144 1200 + 0.584167
NA ECA0425 putative outer membrane efflux proteinchromosome CDS481914 1422 - 0.533755
NA ECA0929 biopolymer transport proteinchromosome CDS1038716 402 - 0.519901
NA ECA1195 hypothetical proteinchromosome CDS1356757 456 - 0.572368
NA ECA1656 hypothetical proteinchromosome CDS1905154 276 + 0.496377
NA ECA0926 putative biopolymer transport proteinchromosome CDS1034710 669 - 0.559043
NA ECA1271 biopolymer transport proteinchromosome CDS1445229 777 - 0.567568
NA ECA4445 inner membrane protein translocase component YidCchromosome CDS4986512 1635 + 0.51682
NA ECA0800 hypothetical proteinchromosome CDS883680 1791 + 0.582915
NA ECA4097 hypothetical proteinchromosome CDS4565664 570 - 0.522807
NA ECA3626 putative type II/IV secretion system proteinchromosome CDS4075862 1017 - 0.559489
NA ECA3395 hypothetical proteinchromosome CDS3808556 417 - 0.386091
NA ECA0787 hypothetical proteinchromosome CDS861360 552 + 0.539855
NA ECA1270 putative biopolymer transport proteinchromosome CDS1444792 423 - 0.51773
NA ECA0939 putative fimbrial proteinchromosome CDS1052370 570 - 0.492982
NA ECA2128 hypothetical proteinchromosome CDS2430108 1008 + 0.58631
NA ECA3222 hypothetical proteinchromosome CDS3605517 738 - 0.501355
NA ECA0798 hypothetical proteinchromosome CDS872064 1632 + 0.55576
NA ECA1098 putative type I secretion proteinchromosome CDS1229354 1443 - 0.568954
NA ECA1100 hypothetical proteinchromosome CDS1242166 3771 - 0.549456
NA ECA1667 putative type IV pilin protein precursorchromosome CDS1915724 558 + 0.342294
NA ECA4098 hypothetical proteinchromosome CDS4566236 852 - 0.537559
NA ECA3266 putative hemagglutinin/hemolysin-related proteinchromosome CDS3656910 13677 - 0.561454
NA ECA3076 putative fimbrial usher proteinchromosome CDS3432966 2382 + 0.538623
NA ECA0943 fimbriae major subunit proteinchromosome CDS1057442 549 - 0.460838
NA ECA1385 hypothetical proteinchromosome CDS1568546 1260 - 0.557143
NA ECA0940 hypothetical proteinchromosome CDS1052967 1035 - 0.530435
NA ECA4157 hypothetical proteinchromosome CDS4645142 594 + 0.525253
NA ECA3075 putative fimbrial chaperonechromosome CDS3432149 774 + 0.527132
NA ECA4298 putative biopolymer transport proteinchromosome CDS4814072 402 - 0.544776
NA ECA0789 hypothetical proteinchromosome CDS862985 1437 + 0.558803
NA ECA0641 hypothetical proteinchromosome CDS711151 396 - 0.507576
NA ECA2932 putative outer membrane efflux lipoproteinchromosome CDS3276884 1473 + 0.567549
NA ECA0793 putative type IV pilus proteinchromosome CDS867805 981 + 0.556575
NA ECA0941 putative fimbrial chaperonechromosome CDS1054020 750 - 0.505333
NA ECA0391 putative activator or transporter protein of haemolysin-like proteinchromosome CDS442927 1779 + 0.527825
NA ECA0396 putative haemolysin-like proteinchromosome CDS453261 1701 + 0.507937
NA ECA0792 putative type IV pilus proteinchromosome CDS866383 1404 + 0.565527
NA ECA4299 putative biopolymer transport proteinchromosome CDS4814475 723 - 0.571231
aggA ECA3267 agglutination proteinchromosome CDS3670963 1353 + 0.498891
ccmD ECA1885 heme exporter protein Dchromosome CDS2140688 222 + 0.594595
clpP ECA1148 ATP-dependent Clp protease proteolytic subunitchromosome CDS1301367 624 + 0.472756
cpxP ECA4310 putative stress resistance proteinchromosome CDS4828523 525 - 0.508571
exbB ECA0358 biopolymer transport proteinchromosome CDS409087 915 + 0.583607
exbD ECA0359 biopolymer transport proteinchromosome CDS410005 426 + 0.523474
ffh ECA3360 signal recognition particle proteinchromosome CDS3774839 1362 - 0.506608
flgM ECA1700 negative regulator of flagellin synthesischromosome CDS1949704 297 - 0.451178
flgN ECA1699 flagella synthesis proteinchromosome CDS1949261 438 - 0.456621
flhA ECA1697 flagellar biosynthesis proteinchromosome CDS1946687 2085 + 0.48777
flhB ECA1696 flagellar biosynthesis proteinchromosome CDS1945543 1152 + 0.469618
fliE ECA1727 flagellar basal body proteinchromosome CDS1972671 315 + 0.48254
fliF ECA1726 flagellar M-ring proteinchromosome CDS1970686 1725 - 0.510145
fliH ECA1724 flagellar assembly proteinchromosome CDS1968982 723 - 0.522822
fliI ECA1723 flagellum-specific ATP synthasechromosome CDS1967612 1374 - 0.516012
fliJ ECA1722 flagellar proteinchromosome CDS1967157 447 - 0.46085
fliN ECA1718 flagellar motor switch proteinchromosome CDS1963802 414 - 0.492754
fliP ECA1716 flagellar biosynthesis proteinchromosome CDS1962607 777 - 0.481338
fliQ ECA1715 flagellar biosynthesis proteinchromosome CDS1962317 270 - 0.485185
fliR ECA1714 flagellar biosynthesis proteinchromosome CDS1961529 786 - 0.458015
fliS ECA1729 flagellar protein FliSchromosome CDS1973615 411 - 0.486618
ftsY ECA4346 cell division proteinchromosome CDS4868002 1410 - 0.534043
hasF ECA1534 outer membrane secretion proteinchromosome CDS1783707 1371 - 0.574763
hecA1 ECA2117 hemolysin/hemagglutinin-like proteinchromosome CDS2408181 3405 + 0.577974
hecA2 ECA2118 hemolysin/hemagglutinin-like protein HecA precursorchromosome CDS2411693 14811 + 0.553102
hecB ECA2116 putative hemolysin activator proteinchromosome CDS2406458 1674 + 0.502389
hofB ECA3799 protein transport proteinchromosome CDS4246629 1473 + 0.545825
hofC ECA3800 protein transport proteinchromosome CDS4248098 1206 + 0.515755
hofQ ECA4094 putative type II secretion system proteinchromosome CDS4563346 1182 - 0.514382
hrcC ECA2100 type III secretion proteinchromosome CDS2386393 2070 + 0.578261
hrcJ ECA2095 type III secretion proteinchromosome CDS2383611 768 + 0.563802
hrcN ECA2083 type III secretion proteinchromosome CDS2370621 1371 - 0.615609
hrcQ ECA2080 type III secretion proteinchromosome CDS2368462 1218 - 0.582102
hrcR ECA2079 type III secretion proteinchromosome CDS2367812 654 - 0.550459
hrcS ECA2078 type III secretion proteinchromosome CDS2367544 261 - 0.544061
hrcT ECA2077 type III secretion proteinchromosome CDS2366737 801 - 0.549313
hrcU ECA2076 type III secretion proteinchromosome CDS2365644 1080 - 0.565741
hrpI ECA2085 type III secretion proteinchromosome CDS2372933 2103 - 0.566334
lepB ECA3279 signal peptidase Ichromosome CDS3683661 966 - 0.506211
lspA ECA3875 signal peptidase IIchromosome CDS4334856 513 - 0.510721
marC ECA3373 multiple antibiotic resistance proteinchromosome CDS3788942 675 + 0.49037
ogl ECA2426 oligogalacturonate lyasechromosome CDS2738982 1167 - 0.488432
oprJ ECA3446 multidrug resistance outer membrane proteinchromosome CDS3865039 1404 - 0.514957
outC ECA3110 general secretion pathway protein Cchromosome CDS3470224 864 - 0.515046
outD ECA3109 general secretion pathway protein Dchromosome CDS3468183 1953 - 0.523297
outE ECA3108 general secretion pathway protein Echromosome CDS3466690 1497 - 0.554442
outF ECA3107 general secretion pathway protein Fchromosome CDS3465462 1227 - 0.551752
outG ECA3106 general secretion pathway protein Gchromosome CDS3464954 441 - 0.521542
outH ECA3105 general secretion pathway protein Hchromosome CDS3464313 567 - 0.537919
outI ECA3104 general secretion pathway protein Ichromosome CDS3463951 366 - 0.557377
outJ ECA3103 general secretion pathway protein Jchromosome CDS3463301 651 - 0.516129
outK ECA3102 general secretion pathway protein Kchromosome CDS3462318 987 - 0.521783
outL ECA3101 general secretion pathway protein Lchromosome CDS3461044 1278 - 0.551643
outM ECA3100 general secretion pathway protein Mchromosome CDS3460553 495 - 0.543434
outN ECA3099 general secretion pathway protein Nchromosome CDS3459817 747 - 0.552878
outO ECA3098 type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS3458845 849 - 0.551237
pelI ECA1094 pectate lyasechromosome CDS1222651 1044 - 0.477012
pilN ECA0534 putative Type IV pilus proteinchromosome CDS606013 1665 + 0.518318
pilQ ECA0538 putative Type IV pilus nucleotide-binding proteinchromosome CDS609487 1560 + 0.553205
pilU ECA0543 putative prepilin peptidasechromosome CDS613398 660 + 0.530303
ppdB ECA0990 prepilin peptidase dependent protein B precursorchromosome CDS1101908 612 + 0.529412
ppdD ECA3798 prepilin peptidase dependent protein Dchromosome CDS4246180 447 + 0.530201
prtF ECA2781 protease secretion proteinchromosome CDS3118174 1347 - 0.552339
secA ECA3806 translocasechromosome CDS4252890 2703 - 0.502405
secB ECA0172 export protein SecBchromosome CDS192299 477 + 0.522013
secD ECA1122 protein export protein SecDchromosome CDS1274535 1848 + 0.515693
secE ECA0217 translocasechromosome CDS251779 384 + 0.520833
secF ECA1123 protein export protein SecFchromosome CDS1276393 969 + 0.493292
secG ECA0702 protein-export membrane proteinchromosome CDS772670 333 + 0.504505
secY ECA4011 preprotein translocase SecYchromosome CDS4490834 1332 - 0.457207
smf ECA3998 hypothetical proteinchromosome CDS4481200 1122 - 0.509804
sohB ECA2288 proteasechromosome CDS2593787 1053 - 0.519468
sppA ECA2339 protease IVchromosome CDS2649493 1851 + 0.517018
tatA ECA0199 sec-independent protein translocasechromosome CDS226078 261 + 0.48659
tatB ECA0200 sec-independent protein translocasechromosome CDS226342 594 + 0.518519
tatC ECA0201 sec-independent protein translocase proteinchromosome CDS226939 756 + 0.511905
tatE ECA1296 twin argininte translocase protein Achromosome CDS1469182 198 + 0.489899
tolB ECA1373 translocation protein TolB precursorchromosome CDS1553863 1293 + 0.532096
tolC ECA0330 outer membrane channel precursor proteinchromosome CDS377889 1401 - 0.523198
tolQ ECA1370 TolQ proteinchromosome CDS1551348 687 + 0.496361
tolR ECA1371 tolR proteinchromosome CDS1552047 426 + 0.502347
virB10 ECA1614 putative conjugal transfer proteinchromosome CDS1868881 1320 - 0.619697
virB11 ECA1613 putative conjugal transfer proteinchromosome CDS1867875 1017 - 0.515241
virB4 ECA1620 putative conjugal transfer proteinchromosome CDS1874142 2748 - 0.566594
virB6 ECA1617 putative conjugal transfer proteinchromosome CDS1871989 1041 - 0.53122
virB8 ECA1616 putative conjugal transfer proteinchromosome CDS1871087 684 - 0.527778
virB9 ECA1615 putative conjugal transfer proteinchromosome CDS1870197 894 - 0.607383
yajC ECA1121 preprotein translocase subunit YajCchromosome CDS1274175 333 + 0.489489
 
Escherichia coli 536, 536
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECP_3415 putative general secretion pathway protein Fchromosome CDS3569467 1197 + 0.507101
NA ECP_2838 prepilin peptidase dependent protein A precursorchromosome CDS2994361 471 - 0.543524
NA ECP_1512 multiple antibiotic resistance protein MarCchromosome CDS1563176 666 - 0.501502
NA ECP_0657 Sec-independent protein translocase protein TatEchromosome CDS693409 204 + 0.5
NA ECP_2148 hypothetical fimbrial chaperone YehC precursorchromosome CDS2231422 675 - 0.388148
NA ECP_3906 60 kDa inner-membrane proteinchromosome CDS4069573 1647 + 0.535519
NA ECP_1288 MarC family integral membrane proteinchromosome CDS1321388 648 + 0.486111
NA ECP_3710 protein-export protein SecBchromosome CDS3891318 468 - 0.510684
NA ECP_1689 spheroplast protein Y precursorchromosome CDS1737806 486 - 0.510288
NA ECP_0468 protein-export membrane protein SecFchromosome CDS496950 1017 + 0.520157
NA ECP_3416 putative general secretion pathway protein G precursorchromosome CDS3570673 438 + 0.493151
NA ECP_3412 probable general secretion pathway protein Cchromosome CDS3565228 816 + 0.417892
NA ECP_3089 biopolymer transport ExbD proteinchromosome CDS3252456 426 - 0.495305
NA ECP_0466 probable transmembrane protein YajCchromosome CDS494777 333 + 0.495495
NA ECP_4194 preprotein translocase secE subunitchromosome CDS4389316 384 + 0.549479
NA ECP_3519 hypothetical outer membrane usher proteinchromosome CDS3675350 2595 - 0.419653
NA ECP_0107 general secretion pathway protein Echromosome CDS116913 1386 - 0.534632
NA ECP_4051 Sec-independent protein translocase protein TatAchromosome CDS4227902 270 + 0.462963
NA ECP_0749 TolR proteinchromosome CDS791222 429 + 0.515152
NA ECP_1859 flagellar protein FliSchromosome CDS1908138 411 + 0.486618
NA ECP_3262 protein-export membrane protein SecGchromosome CDS3432620 333 - 0.498498
NA ECP_1883 flagellar biosynthetic protein FliQchromosome CDS1927542 270 + 0.511111
NA ECP_1876 flagellar FliJ proteinchromosome CDS1922872 444 + 0.522523
NA ECP_2238 cytochrome c-type biogenesis protein CcmDchromosome CDS2332965 210 - 0.57619
NA ECP_2611 signal recognition particle proteinchromosome CDS2754186 1362 - 0.542584
NA ECP_0467 protein-export membrane protein SecDchromosome CDS495137 1848 + 0.532468
NA ECP_1714 protease IVchromosome CDS1766245 1857 + 0.519117
NA ECP_1875 flagellum-specific ATP synthasechromosome CDS1921480 1374 + 0.583697
NA ECP_0498 ATP-dependent Clp protease proteolytic subunitchromosome CDS523905 624 + 0.501603
NA ECP_0751 TolB protein precursorchromosome CDS793113 1293 + 0.532096
NA ECP_3528 putative membrane protein YhgNchromosome CDS3690969 594 + 0.5
NA ECP_1911 PilV-like proteinchromosome CDS1950936 1464 - 0.441257
NA ECP_1825 flagellar biosynthetic protein FlhBchromosome CDS1876039 1149 - 0.552655
NA ECP_3388 preprotein translocase secY subunitchromosome CDS3552416 1332 - 0.496246
NA ECP_2570 signal peptidase Ichromosome CDS2709745 975 - 0.514872
NA ECP_1882 flagellar biosynthetic protein FliP precursorchromosome CDS1926795 738 + 0.53794
NA ECP_1871 flagellar hook-basal body complex protein FliEchromosome CDS1917626 315 - 0.549206
NA ECP_1884 flagellar biosynthetic protein FliRchromosome CDS1927820 786 + 0.47201
NA ECP_4052 Sec-independent protein translocase protein TatBchromosome CDS4228175 516 + 0.544574
 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_1343 biopolymer transport proteinchromosome CDS741192 429 + 0.512821
NA APECO1_3031 fimbrial chaperone protein precursorchromosome CDS3857029 780 - 0.380769
NA APECO1_3161 hypothetical proteinchromosome CDS3723152 1125 - 0.505778
NA APECO1_2112 FimF protein precursorchromosome CDS4928715 534 + 0.490637
aufA APECO1_3030 Auf fimbriae major subunit precursor AufAchromosome CDS3857882 705 - 0.476596
clpP APECO1_1574 ATP-dependent proteolytic subunit of ClpA-ClpP serine proteasechromosome CDS472393 624 + 0.501603
ecpD APECO1_1845 predicted periplasmic pilin chaperonechromosome CDS161474 741 - 0.442645
exbB APECO1_3418 membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3434750 735 - 0.526531
exbD APECO1_3419 membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3434318 426 - 0.483568
ffh APECO1_3923 signal recognition particle (SRP) component with 4.5S RNA (ffs)chromosome CDS2905548 1362 - 0.542584
fimC APECO1_2114 type I fimbrial chaperonechromosome CDS4925281 726 + 0.444904
flgM APECO1_153 FlgMchromosome CDS1112191 294 - 0.517007
flhB APECO1_929 flagellar biosynthesis protein Bchromosome CDS1972170 1149 - 0.550914
fliE APECO1_976 Flagellar hook-basal body complex protein fliEchromosome CDS2020023 315 - 0.549206
fliQ APECO1_988 flagellar biosynthetic protein FliQchromosome CDS2029940 270 + 0.507407
fliS APECO1_966 flagellar protein FliSchromosome CDS2010536 411 + 0.481752
hofC APECO1_3128 putative general secretion pathway protein Cchromosome CDS3746321 816 + 0.417892
hofD APECO1_3127 putative general secretion pathway protein D precursorchromosome CDS3747108 1965 + 0.498219
hofF APECO1_3125 putative general secretion pathway protein Fchromosome CDS3750560 1197 + 0.506266
hofG APECO1_3124 putative general secretion pathway protein G precursorchromosome CDS3751766 438 + 0.493151
lepB APECO1_3963 leader peptidase (signal peptidase I)chromosome CDS2858410 975 - 0.52
lspA APECO1_1956 signal peptidase IIchromosome CDS26715 495 + 0.523232
marC APECO1_647 Multiple antibiotic resistance protein MarCchromosome CDS1656184 666 - 0.504505
ppdA APECO1_3679 prepilin peptidase dependent protein A precursorchromosome CDS3171238 471 - 0.541401
prlA APECO1_3148 putative ATPase subunit of translocasechromosome CDS3733491 1332 - 0.496246
secD APECO1_1602 export membrane protein SecDchromosome CDS443619 1848 + 0.531926
secE APECO1_2491 preprotein translocase SecE subunitchromosome CDS4498939 384 + 0.549479
secF APECO1_1601 export membrane protein SecFchromosome CDS445432 1017 + 0.519174
secG APECO1_3257 putative export membrane proteinchromosome CDS3614903 333 - 0.501502
tatA APECO1_2619 sec-independent twin-arginine translocase subunit TatAchromosome CDS4340345 312 + 0.451923
tolB APECO1_1341 TolB protein precursorchromosome CDS743065 1296 + 0.532407
tolQ APECO1_1344 TolQ proteinchromosome CDS740496 693 + 0.503608
yadK APECO1_1849 hypothetical proteinchromosome CDS157025 597 - 0.433836
yadN APECO1_1844 putative fimbrial-like adhesin proteinchromosome CDS162323 615 - 0.426016
yajC APECO1_1603 hypothetical proteinchromosome CDS443259 333 + 0.495495
ychE APECO1_356 putative inner membrane proteinchromosome CDS1312075 648 + 0.476852
yehC APECO1_4436 putative fimbrial chaperone YehC precursorchromosome CDS2304460 675 - 0.38963
yhgN APECO1_3023 putative antibiotic transporterchromosome CDS3870016 594 + 0.503367
yidC APECO1_2754 inner membrane protein translocase component YidCchromosome CDS4179441 1647 + 0.535519
yjjA APECO1_2064 hypothetical proteinchromosome CDS4993692 498 - 0.491968
 
Escherichia coli CFT073, CFT073
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA c4214 Putative major fimbrial subunit precursorchromosome CDS3998920 705 - 0.476596
NA c1207 hypothetical proteinchromosome CDS1163191 1614 + 0.519827
NA c0360 hypothetical proteinchromosome CDS336046 1248 + 0.455128
NA c1619 hypothetical proteinchromosome CDS1461577 327 + 0.507645
NA c1934 Outer membrane usher protein fimD precursorchromosome CDS1774532 2652 - 0.443439
NA c1936 Type-1 fimbrial protein, A chain precursorchromosome CDS1778297 612 - 0.444444
NA c0363 Putative RTX family exoprotein A genechromosome CDS340972 4833 + 0.489137
NA c1935 Chaperone protein fimC precursorchromosome CDS1777225 711 - 0.452883
NA c3655 Antigen 43 precursorchromosome CDS3491808 3129 + 0.582934
NA c4518 hypothetical proteinchromosome CDS4303576 438 - 0.502283
NA c1572 Putative capsid assembly protein of prophagechromosome CDS1429149 1506 + 0.60093
NA c0545 hypothetical proteinchromosome CDS527471 600 + 0.528333
NA c1448 Putative capsid assembly protein of prophagechromosome CDS1352906 1506 + 0.602922
NA c3702 hypothetical proteinchromosome CDS3532178 414 - 0.5
NA c1468 hypothetical proteinchromosome CDS1368995 2064 + 0.483043
NA c2895 yapH homologchromosome CDS2748603 7164 - 0.489671
NA c4208 Putative fimbrial chaperone precursorchromosome CDS3993608 798 - 0.388471
NA c4786 sec-independent translocasechromosome CDS4548070 516 + 0.544574
NA c4209 Putative minor fimbrial subunit precursorchromosome CDS3994350 558 - 0.356631
NA c1273 Antigen 43 precursorchromosome CDS1225454 3276 + 0.578144
NA c0426 hypothetical proteinchromosome CDS410042 2331 - 0.460317
NA c0319 Putative oligogalacturonide lyasechromosome CDS289986 1173 + 0.387894
NA c1615 hypothetical proteinchromosome CDS1459716 528 + 0.49053
NA c3170 Putative capsid protein of prophagechromosome CDS3040953 1434 - 0.609484
NA c2394 PilV-like proteinchromosome CDS2197781 1464 - 0.441257
NA c0478 Putative structural proteinchromosome CDS465478 2988 + 0.459839
NA c1206 hypothetical proteinchromosome CDS1161999 1233 + 0.556367
NA c4424 Putative adhesinchromosome CDS4205984 5337 + 0.5267
NA c4213 Chaperone protein fimC precursorchromosome CDS3998067 780 - 0.382051
NA c0393 Haemoglobin proteasechromosome CDS371877 4131 - 0.48366
NA c0345 Putative member of ShlA/HecA/FhaA exoprotein familychromosome CDS312645 9651 + 0.555694
NA c0350 Pic serine protease precursorchromosome CDS326209 4116 - 0.499514
NA c4222 Putative DNA processing proteinchromosome CDS4011694 1296 - 0.506173
NA c1205 hypothetical proteinchromosome CDS1159313 2727 + 0.56289
NA c4210 Putative minor fimbrial subunit precursorchromosome CDS3994873 453 - 0.401766
NA c1765 Partial Putative outer membrane channel proteinchromosome CDS1600755 1374 + 0.539301
ccmD c2735 Heme exporter protein Dchromosome CDS2582885 210 - 0.566667
clpP c0553 ATP-dependent Clp protease proteolytic subunitchromosome CDS530604 624 + 0.501603
cpxP c4865 hypothetical proteinchromosome CDS4625475 504 + 0.501984
cusC c0658 Probable outer membrane lipoprotein cusC precursorchromosome CDS639221 1383 + 0.516992
eaeH c0415 Putative adhesinchromosome CDS395711 4251 + 0.519878
ecpD c0171 Chaperone protein ecpD precursorchromosome CDS165999 741 - 0.442645
exbB c3741 Biopolymer transport exbB proteinchromosome CDS3572894 735 - 0.52381
exbD c3740 Biopolymer transport exbD proteinchromosome CDS3572462 426 - 0.483568
ffh c3131 Signal recognition particle proteinchromosome CDS3009020 1362 - 0.542584
fhiA c0377 FhiA proteinchromosome CDS356346 1740 - 0.571839
fimA c5393 Type-1 fimbrial protein, A chain precursorchromosome CDS5137789 606 + 0.493399
fimC c5395 Chaperone protein fimC precursorchromosome CDS5139035 726 + 0.446281
fimD c5396 Outer membrane usher protein fimD precursorchromosome CDS5139826 2637 + 0.482746
fimF c5397 FimF protein precursorchromosome CDS5142469 534 + 0.490637
fimG c5399 FimG protein precursorchromosome CDS5143015 504 + 0.521825
fimI c5394 Fimbrin-like protein fimI precursorchromosome CDS5138459 540 + 0.496296
flgM c1340 Negative regulator of flagellin synthesischromosome CDS1273338 294 - 0.530612
flgN c1339 Flagella synthesis protein flgNchromosome CDS1272917 417 - 0.482014
flhA c2293 flagellar biosynthesis proteinchromosome CDS2113793 2154 - 0.550139
flhB c2294 flagellar biosynthesis proteinchromosome CDS2115864 1149 - 0.550914
fliE c2353 flagellar basal body proteinchromosome CDS2164468 345 - 0.536232
fliF c2354 flagellar M-ring proteinchromosome CDS2164997 1659 + 0.549729
fliH c2357 flagellar assembly proteinchromosome CDS2167615 708 + 0.573446
fliI c2358 flagellum-specific ATP synthasechromosome CDS2168322 1374 + 0.582969
fliJ c2359 flagellar proteinchromosome CDS2169714 444 + 0.522523
fliN c2363 flagellar motor switch proteinchromosome CDS2172856 414 + 0.557971
fliP c2365 flagellar biosynthesis proteinchromosome CDS2173637 738 + 0.53794
fliQ c2366 flagellar biosynthesis proteinchromosome CDS2174384 270 + 0.511111
fliR c2367 flagellar biosynthesis proteinchromosome CDS2174662 786 + 0.469466
fliS c2340 flagellar protein FliSchromosome CDS2154981 411 + 0.479319
focA c1239 F1C major fimbrial subunit precursorchromosome CDS1188213 543 + 0.443831
focC c1241 F1C periplasmic chaperonechromosome CDS1189406 696 + 0.452586
focD c1242 F1C fimbrial usherchromosome CDS1190123 2679 + 0.52221
focF c1243 F1C minor fimbrial subunit F precursorchromosome CDS1192814 528 + 0.467803
focG c1244 F1C minor fimbrial subunit protein G presursorchromosome CDS1193363 504 + 0.418651
focH c1245 F1C Putative fimbrial adhesin precursorchromosome CDS1193817 1011 + 0.479723
ftsY c4257 Cell division protein ftsYchromosome CDS4041243 1497 - 0.530394
hofB c0126 Protein transport protein hofBchromosome CDS120853 1386 - 0.536075
hofC c0125 Protein transport protein hofCchromosome CDS119661 1203 - 0.522028
hofD c4106 Leader peptidasechromosome CDS3896922 678 + 0.504425
hofF c4098 Putative general secretion pathway protein Fchromosome CDS3891196 1197 + 0.509607
hofG c4099 Putative general secretion pathway protein G precursorchromosome CDS3892402 438 + 0.493151
hofH c4100 Putative general secretion pathway protein H precursorchromosome CDS3892847 510 + 0.554902
hofQ c4161 Protein transport protein hofQ precursorchromosome CDS3945518 1239 - 0.538337
htrE c0170 Outer membrane usher protein htrE precursorchromosome CDS163376 2589 - 0.447277
lepB c3092 Signal peptidase Ichromosome CDS2967202 975 - 0.517949
lspA c0031 signal peptidase IIchromosome CDS27469 495 + 0.523232
marC c1951 Multiple antibiotic resistance protein marCchromosome CDS1794147 666 - 0.503003
nfrB c0655 Bacteriophage N4 adsorption protein Bchromosome CDS634562 2163 - 0.526121
papA c3592 PapA proteinchromosome CDS3436965 600 - 0.418333
papA_2 c5188 PapA proteinchromosome CDS4948203 597 - 0.41206
papC c3590 PapC proteinchromosome CDS3433739 2523 - 0.524772
papC_2 c5186 PapC proteinchromosome CDS4944977 2532 - 0.525671
papD c3589 PapD proteinchromosome CDS3432934 606 - 0.450495
papD_2 c5185 PapD proteinchromosome CDS4944172 735 - 0.458503
papK c3586 PapK proteinchromosome CDS3431770 540 - 0.542593
papK_2 c5182 PapK proteinchromosome CDS4943008 540 - 0.542593
ppdA c3420 Prepilin peptidase dependent protein A precursorchromosome CDS3271027 471 - 0.543524
ppdB c3419 Prepilin peptidase dependent protein B precursorchromosome CDS3270473 588 - 0.52381
ppdD c0127 Prepilin peptidase dependent protein D precursorchromosome CDS122248 441 - 0.526077
prlA c4061 preprotein translocase SecYchromosome CDS3874142 1332 - 0.495495
sat c3619 Aecreted auto transpoter toxinchromosome CDS3456362 3900 - 0.415128
secA c0116 translocasechromosome CDS112106 2706 + 0.521064
secB c4432 export protein SecBchromosome CDS4217846 528 - 0.5
secD c0518 protein export protein SecDchromosome CDS501838 1848 + 0.532468
secE c4936 translocasechromosome CDS4709606 384 + 0.549479
secF c0519 protein export protein SecFchromosome CDS503651 1017 + 0.521141
secG c3931 protein-export membrane proteinchromosome CDS3755804 381 - 0.501312
sfaD c1240 Putative minor F1C fimbrial subunit precursorchromosome CDS1188841 525 + 0.506667
smf c4046 Unknown protein fragment 1chromosome CDS3863803 1125 - 0.506667
sohB c1737 Possible protease sohBchromosome CDS1572932 1050 + 0.50381
sppA c2170 Protease IVchromosome CDS2006066 1857 + 0.518578
spy c2143 Spheroplast protein Y precursorchromosome CDS1978985 486 - 0.510288
tatA c4785 twin argininte translocase protein Achromosome CDS4547755 312 + 0.451923
tatE c0717 twin argininte translocase protein Achromosome CDS699539 204 + 0.5
tolB c0819 translocation protein TolB precursorchromosome CDS800407 1296 + 0.530864
tolC c3781 outer membrane channel precursor proteinchromosome CDS3614867 1521 + 0.514135
tolQ c0816 TolQ proteinchromosome CDS797823 693 + 0.503608
tolR c0817 TolR proteinchromosome CDS798519 429 + 0.515152
yadK c0167 Protein yadKchromosome CDS161550 597 - 0.432161
yadM c0169 Hypothetical protein yadM precursorchromosome CDS162793 567 - 0.417989
yadN c0172 Hypothetical fimbrial-like protein yadN precursorchromosome CDS166848 615 - 0.426016
yajC c0517 preprotein translocase subunit YajCchromosome CDS501448 363 + 0.46832
ybbJ c0609 Hypothetical protein ybbJchromosome CDS590361 459 - 0.583878
ycbS c4212 Hypothetical outer membrane usher protein ycbS precursorchromosome CDS3995436 2595 - 0.419653
ychE c1706 Hypothetical protein yhcEchromosome CDS1543724 648 + 0.475309
ydeR c1932 Hypothetical fimbrial-like protein ydeR precursorchromosome CDS1773472 504 - 0.434524
ydeS c1933 Hypothetical fimbrial-like protein ydeS precursorchromosome CDS1773988 531 - 0.436911
ydeU c2894 Hypothetical protein ydeUchromosome CDS2747815 876 - 0.472603
ydhQ c2058 Hypothetical protein ydhQchromosome CDS1901009 1257 - 0.512331
yehB c2636 Hypothetical outer membrane usher protein yehB precursorchromosome CDS2479102 2496 - 0.452724
yehC c2637 Hypothetical fimbrial chaperone yehC precursorchromosome CDS2481598 675 - 0.386667
yfaL c2775 Hypothetical protein yfaL precursorchromosome CDS2627282 3765 - 0.50571
yfcP c2879 Hypothetical fimbrial-like protein yfcP precursorchromosome CDS2732134 528 - 0.545455
yfcS c2882 Hypothetical fimbrial chaperone yfcS precursorchromosome CDS2733654 753 - 0.552457
yfcU c2883 Putative outer membrane proteinchromosome CDS2734426 2655 - 0.544256
yggR c3536 Hypothetical protein yggRchromosome CDS3390045 1056 - 0.543561
yghD c3699 Putative general secretion pathway protein M-type yghDchromosome CDS3530466 537 - 0.549348
yheE c4095 Probable general secretion pathway protein Cchromosome CDS3886957 816 + 0.417892
yheF c4096 Probable general secretion pathway protein D precursorchromosome CDS3887744 1965 + 0.499237
yheG c4097 Probable general secretion pathway protein Echromosome CDS3889718 1482 + 0.518219
yheH c4101 Probable general secretion pathway protein I precursorchromosome CDS3893314 417 + 0.494005
yheI c4102 Probable general secretion pathway protein J precursorchromosome CDS3893723 588 + 0.5
yheJ c4103 Probable general secretion pathway protein Kchromosome CDS3894303 906 + 0.497792
yheK c4104 Probable general secretion pathway protein Lchromosome CDS3895298 1167 + 0.481577
yhgN c4221 Hypothetical protein yhgNchromosome CDS4011055 594 + 0.503367
yidC c4629 inner membrane protein translocase component YidCchromosome CDS4386813 1647 + 0.538555
yidR c4609 Hypothetical protein yidRchromosome CDS4369798 1251 - 0.541966
yjaI c4959 Zinc resistance-associated protein precursorchromosome CDS4732470 561 - 0.509804
yjcP c5085 Hypothetical outer-membrane lipoprotein yjcP precursorchromosome CDS4858723 1467 - 0.560327
yjjA c5439 Hypothetical protein yjjA precursorchromosome CDS5188682 498 - 0.491968
yohG c2671 Putative channel/filament proteinschromosome CDS2519000 1527 - 0.542895
yqeC c3454 Hypothetical protein yqeCchromosome CDS3310549 771 - 0.490272
yqiG c3792 Hypothetical outer membrane usher protein yqiG precursorchromosome CDS3625228 2523 + 0.467697
yqiH c3793 Hypothetical fimbrial chaperone yqiH precursorchromosome CDS3627757 750 + 0.476
yrfC c4164 Hypothetical protein yrfCchromosome CDS3947486 540 - 0.540741
 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ccmD b2198 cytochrome c biogenesis proteinchromosome CDS2293399 210 - 0.571429
clpP b0437 ATP-dependent Clp protease proteolytic subunitchromosome CDS455901 624 + 0.511218
cpxP b4484 periplasmic protein combats stresschromosome CDS4103843 501 + 0.500998
cusC b0572 copper/silver efflux system, outer membrane componentchromosome CDS594823 1374 + 0.512373
ecpD b0140 predicted periplasmic pilin chaperonechromosome CDS155461 741 - 0.443995
exbB b3006 membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3149272 735 - 0.530612
exbD b3005 membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3148840 426 - 0.502347
ffh b2610 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)chromosome CDS2744456 1362 - 0.54185
fimA b4314 major type 1 subunit fimbrin (pilin)chromosome CDS4541138 549 + 0.517304
fimC b4316 chaperone, periplasmicchromosome CDS4542327 726 + 0.444904
fimD b4317 outer membrane usher protein, type 1 fimbrial synthesischromosome CDS4543119 2637 + 0.486159
fimF b4318 minor component of type 1 fimbriaechromosome CDS4545765 531 + 0.495292
fimG b4319 minor component of type 1 fimbriaechromosome CDS4546308 504 + 0.52381
flgM b1071 anti-sigma factor for FliA (sigma 28)chromosome CDS1129058 294 - 0.527211
flgN b1070 export chaperone for FlgK and FlgLchromosome CDS1128637 417 - 0.482014
flhA b1879 flagellar biosynthesis protein Achromosome CDS1960996 2079 - 0.548822
flhB b1880 flagellar biosynthesis protein Bchromosome CDS1963067 1149 - 0.549173
fliE b1937 flagellar hook-basal body protein FliEchromosome CDS2010724 315 - 0.539683
fliF b1938 flagellar M-ring proteinchromosome CDS2011253 1659 + 0.546112
fliI b1941 flagellum-specific ATP synthasechromosome CDS2014578 1374 + 0.585881
fliJ b1942 flagellar biosynthesis chaperonechromosome CDS2015970 444 + 0.515766
fliN b1946 flagellar motor switch proteinchromosome CDS2019112 414 + 0.550725
fliP b1948 flagellar biosynthesis protein Pchromosome CDS2019893 738 + 0.531165
fliQ b1949 flagellar biosynthesis protein Qchromosome CDS2020640 270 + 0.503704
fliR b1950 flagellar biosynthesis protein Rchromosome CDS2020917 786 + 0.474555
fliS b1925 flagellar protein FliSchromosome CDS2003327 411 + 0.498783
flu b2000 CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporterchromosome CDS2069563 3120 + 0.582372
ftsY b3464 fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved proteinchromosome CDS3600773 1494 - 0.534806
gspC b3324 general secretory pathway component, crypticchromosome CDS3453600 816 + 0.42402
gspE b3326 general secretory pathway component, crypticchromosome CDS3456361 1482 + 0.524966
gspF b3327 general secretory pathway component, crypticchromosome CDS3457839 1197 + 0.510443
gspG b3328 pseudopilin, cryptic, general secretion pathwaychromosome CDS3459045 438 + 0.486301
gspH b3329 predicted general secretory pathway component, crypticchromosome CDS3459490 510 + 0.560784
gspJ b3331 predicted general secretory pathway component, crypticchromosome CDS3460366 588 + 0.503401
gspK b3332 general secretory pathway component, crypticchromosome CDS3460946 984 + 0.502033
gspO b3335 bifunctional prepilin leader peptidase/ methylasechromosome CDS3463565 678 + 0.504425
hofB b0107 conserved protein with nucleoside triphosphate hydrolase domainchromosome CDS115714 1386 - 0.534632
hofC b0106 assembly protein in type IV pilin biogenesis, transmembrane proteinchromosome CDS114522 1203 - 0.519534
hofQ b3391 predicted fimbrial transporterchromosome CDS3517487 1239 - 0.544794
htrE b0139 predicted outer membrane usher proteinchromosome CDS152829 2598 - 0.43341
lepB b2568 leader peptidase (signal peptidase I)chromosome CDS2702357 975 - 0.52
lspA b0027 signal peptidase IIchromosome CDS25207 495 + 0.535354
marC b1529 predicted transporterchromosome CDS1616267 666 - 0.510511
nfrB b0569 bacteriophage N4 receptor, inner membrane subunitchromosome CDS590164 2238 - 0.525022
ppdA b2826 hypothetical proteinchromosome CDS2961729 471 - 0.541401
ppdB b2825 hypothetical proteinchromosome CDS2961175 564 - 0.52305
ppdD b0108 predicted major pilin subunitchromosome CDS117109 441 - 0.530612
secA b0098 translocasechromosome CDS108279 2706 + 0.524021
secB b3609 export protein SecBchromosome CDS3781684 468 - 0.508547
secD b0408 protein export protein SecDchromosome CDS426871 1848 + 0.531926
secE b3981 translocasechromosome CDS4175381 384 + 0.549479
secF b0409 protein export protein SecFchromosome CDS428729 972 + 0.516461
secG b3175 protein-export membrane proteinchromosome CDS3320195 333 - 0.495495
secY b3300 protein translocase subunit SecYchromosome CDS3440788 1332 - 0.496997
sfmA b0530 predicted fimbrial-like adhesin proteinchromosome CDS557435 543 + 0.445672
sfmC b0531 pilin chaperone, periplasmicchromosome CDS558197 693 + 0.425685
sfmD b0532 predicted outer membrane export usher proteinchromosome CDS558920 2604 + 0.478111
sfmF b0534 predicted fimbrial-like adhesin proteinchromosome CDS562553 516 + 0.5
smf b4473 hypothetical proteinchromosome CDS3430458 1125 - 0.509333
sohB b1272 predicted inner membrane peptidasechromosome CDS1327356 1050 + 0.505714
sppA b1766 protease IV (signal peptide peptidase)chromosome CDS1846861 1857 + 0.517501
spy b1743 envelope stress induced periplasmic proteinchromosome CDS1823164 486 - 0.50823
tatA b3836 twin argininte translocase protein Achromosome CDS4019968 270 + 0.455556
tatB b3838 sec-independent translocasechromosome CDS4020241 516 + 0.554264
tatC b3839 TatABCE protein translocation system subunitchromosome CDS4020759 777 + 0.516088
tatE b0627 twin arginine translocase protein Echromosome CDS658170 204 + 0.5
tolB b0740 translocation protein TolB precursorchromosome CDS776963 1293 + 0.531322
tolQ b0737 membrane spanning protein in TolA-TolQ-TolR complexchromosome CDS774376 693 + 0.50505
tolR b0738 membrane spanning protein in TolA-TolQ-TolR complexchromosome CDS775072 429 + 0.517483
yadK b0136 predicted fimbrial-like adhesin proteinchromosome CDS151003 597 - 0.413735
yadN b0141 predicted fimbrial-like adhesin proteinchromosome CDS156299 585 - 0.447863
yagZ b0293 hypothetical proteinchromosome CDS309308 588 - 0.528912
yajC b0407 preprotein translocase subunit YajCchromosome CDS426511 333 + 0.495495
ybbJ b0488 conserved inner membrane proteinchromosome CDS513625 456 - 0.574561
ybgD b0719 predicted fimbrial-like adhesin proteinchromosome CDS751452 567 - 0.467372
ybgP b0717 predicted assembly proteinchromosome CDS748202 729 - 0.477366
ycbR b0939 predicted periplasmic pilin chaperonechromosome CDS997713 702 + 0.450142
ycbS b0940 predicted outer membrane usher proteinchromosome CDS998439 2601 + 0.478662
ycbU b0942 predicted fimbrial-like adhesin proteinchromosome CDS1002112 543 + 0.471455
ycgV b1202 predicted adhesinchromosome CDS1252308 2868 - 0.497908
ychE b1242 predicted inner membrane proteinchromosome CDS1297821 648 + 0.478395
ydeK b1510 predicted lipoproteinchromosome CDS1592133 3978 - 0.493213
ydeR b1503 predicted fimbrial-like adhesin proteinchromosome CDS1585817 504 - 0.448413
ydeS b1504 predicted fimbrial-like adhesin proteinchromosome CDS1586333 531 - 0.448211
ydeT b1505 hypothetical proteinchromosome CDS1586877 1149 - 0.445605
ydhQ b1664 hypothetical proteinchromosome CDS1742895 1257 - 0.513922
yehB b2109 predicted outer membrane proteinchromosome CDS2186452 2481 - 0.455058
yehC b2110 predicted periplasmic pilin chaperonechromosome CDS2188948 720 - 0.393056
yehD b2111 predicted fimbrial-like adhesin proteinchromosome CDS2189702 543 - 0.405157
yejO b2190 predicted autotransporter outer membrane proteinchromosome CDS2284412 2511 - 0.483473
yfaL b2233 adhesinchromosome CDS2338439 3753 - 0.513722
yfcP b2333 predicted fimbrial-like adhesin proteinchromosome CDS2448073 540 - 0.487037
yfcS b2336 predicted periplasmic pilus chaperonechromosome CDS2449606 753 - 0.50996
yfcT b2337 predicted outer membrane export usher proteinchromosome CDS2450378 897 - 0.532887
yfcU b2338 predicted export usher proteinchromosome CDS2451287 1737 - 0.510075
yghD b2968 predicted secretion pathway M-type protein, membrane anchoredchromosome CDS3108612 537 - 0.532588
yghF b2970 predicted secretion pathway protein, C-type proteinchromosome CDS3110076 867 - 0.512111
ygiL b3043 predicted fimbrial-like adhesin proteinchromosome CDS3183436 552 + 0.436594
yhcA b3215 predicted periplasmic chaperone proteinchromosome CDS3360134 675 + 0.416296
yhcD b3216 predicted outer membrane proteinchromosome CDS3360829 2382 + 0.45508
yhgN b3434 predicted antibiotic transporterchromosome CDS3573094 594 + 0.5
yidC b3705 inner membrane protein translocase component YidCchromosome CDS3883099 1647 + 0.536733
yjcP b4080 predicted outer membrane factor of efflux pumpchromosome CDS4297587 1467 - 0.557601
yqiG b3046 predicted outer membrane usher proteinchromosome CDS3185422 2466 + 0.422141
yraH b3142 predicted fimbrial-like adhesin proteinchromosome CDS3285448 585 + 0.451282
yraI b3143 predicted periplasmic pilin chaperonechromosome CDS3286112 696 + 0.442529
yraJ b3144 predicted outer membrane proteinchromosome CDS3286836 2517 + 0.475963
yraK b3145 predicted fimbrial-like adhesin proteinchromosome CDS3289363 1092 + 0.478938
yrfC b3394 predicted fimbrial assembly proteinchromosome CDS3519455 540 - 0.553704
zraP b4002 Zn-binding periplasmic proteinchromosome CDS4199286 426 - 0.535211
 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z4965 putative fimbrial subunitchromosome CDS4519782 531 - 0.512241
NA Z0023 putative chaperone proteinchromosome CDS21762 684 - 0.365497
NA Z4190 type III secretion proteinchromosome CDS3792965 987 - 0.356636
NA Z2200 putative major fimbrial subunitchromosome CDS1974046 564 + 0.466312
NA Z1211 putative adhesinchromosome CDS1132148 3018 + 0.567594
NA Z2102 unknown protein encoded within prophage CP-933Ochromosome CDS1891086 567 + 0.449735
NA Z4187 type III secretion apparatus proteinchromosome CDS3791585 453 - 0.403974
NA Z2134 putative head-tail preconnector protein of prophage CP-933Ochromosome CDS1912872 1506 + 0.604914
NA Z4186 putative integral membrane protein-component of typeIII secretion apparatuschromosome CDS3791270 237 - 0.421941
NA Z2112 putative ClpP-like protease encoded within prophage CP-933Ochromosome CDS1897625 798 - 0.526316
NA Z2384 unknown protein encoded within prophage CP-933Rchromosome CDS2146893 519 - 0.481696
NA Z5932 putative invasinchromosome CDS5446463 5103 - 0.492063
NA Z4185 type III secretion proteinchromosome CDS3790140 1122 - 0.33066
NA Z2691 possible enzymechromosome CDS2419778 1257 - 0.516309
NA Z2504 partial putative outer membrane channel proteinchromosome CDS2228635 438 - 0.538813
NA Z4195 type III secretion apparatus proteinchromosome CDS3796536 2061 - 0.373605
NA Z0022 putative usher proteinchromosome CDS19299 2451 - 0.410037
NA Z5225 putative major fimbrial subuitchromosome CDS4772963 603 - 0.44942
NA Z3135 putative invasinchromosome CDS2789871 7983 + 0.500438
NA Z5029 putative adhesinchromosome CDS4588091 4767 + 0.503461
NA Z5138 hypothetical proteinchromosome CDS4688209 324 - 0.314815
NA Z0639 hypothetical proteinchromosome CDS605968 1017 - 0.485742
NA Z1651 putative adhesinchromosome CDS1527754 3018 + 0.567594
NA Z3097 putative peptidase encoded within prophage CP-933Uchromosome CDS2762762 960 - 0.526042
NA Z4968m PapC-like porin protein involved in fimbrial biogenesischromosome CDS4521387 2574 - 0.514374
NA Z2361 putative capsid assembly protein of prophage CP-933Rchromosome CDS2132439 1506 - 0.604914
NA Z3596 putative minor fimbrial subunitchromosome CDS3246491 522 - 0.44636
NA Z0967 putative protease encoded in prophage CP-933Kchromosome CDS909701 2028 + 0.5143
NA Z4189 putative integral membrane protein-component of typeIII secretion apparatuschromosome CDS3792310 666 - 0.345345
NA Z5220 putative fimbrial proteinchromosome CDS4767426 1083 - 0.437673
NA Z5222 putative fimbrial usherchromosome CDS4769618 2535 - 0.485207
NA Z0986 unknown protein encoded by prophage CP-933Kchromosome CDS927313 993 + 0.442095
NA Z3271 hypothetical proteinchromosome CDS2930677 348 + 0.408046
NA Z2506 partial putative outer membrane channel proteinchromosome CDS2228981 1029 - 0.541302
NA Z2322 putative outer membrane proteinchromosome CDS2098645 2460 - 0.544309
NA Z4969 putative fimbrial chaperonechromosome CDS4523989 699 - 0.424893
NA Z4197 type III secretion apparatus proteinchromosome CDS3799739 1704 - 0.387911
NA Z2196 putative ATP-binding component of a transport system and adhesin proteinchromosome CDS1970492 1401 + 0.528908
NA Z1537 putative chaperonechromosome CDS1430302 723 - 0.457815
NA Z2205 putative fimbrial-like proteinchromosome CDS1978930 504 + 0.446429
NA Z4799 putative DNA processing proteinchromosome CDS4358731 1296 - 0.503086
NA Z5224 putative fimbrial chaperonechromosome CDS4772476 384 - 0.382812
NA Z0608 putative outer membrane export proteinchromosome CDS579898 1356 + 0.515487
NA Z2203 putative fimbrial usher proteinchromosome CDS1975722 2652 + 0.44457
NA Z2323 hypothetical proteinchromosome CDS2101324 2721 - 0.494671
NA Z1542 putative member of ShlA/HecA/FhaA exoprotein familychromosome CDS1433706 3813 + 0.492788
NA Z1543 putative outer membrane transporter of ShlA/HecA/FhaA exoprotein familychromosome CDS1437607 1620 + 0.424691
NA Z1288m PapC-like porin protein involved in fimbrial biogenesischromosome CDS1217911 2601 + 0.476355
NA Z1534 putative chaperonechromosome CDS1425691 690 - 0.462319
NA Z1200 hypothetical proteinchromosome CDS1121500 1047 + 0.526266
NA Z4194 type III secretion system ATPasechromosome CDS3795212 1320 - 0.446212
NA Z0615 putative RTX family exoproteinchromosome CDS585949 15567 + 0.610779
NA Z3600 putative fimbrial usherchromosome CDS3248768 2640 - 0.544318
NA Z2204 putative fimbrial-like proteinchromosome CDS1978387 531 + 0.455744
NA Z0390 hypothetical proteinchromosome CDS368429 1110 - 0.425225
NA Z0024 putative type-1 fimbrial proteinchromosome CDS22495 534 - 0.391386
NA Z4180 putative lipoprotein of type III secretion apparatuschromosome CDS3786504 735 - 0.364626
NA Z4188 type III secretion apparatus proteinchromosome CDS3792039 261 - 0.383142
NA Z1536 putative usher proteinchromosome CDS1427727 2523 - 0.512485
NA Z2201 putative fimbrial chaperone proteinchromosome CDS1974961 720 + 0.459722
NA Z1972 partial putative adhesion proteinchromosome CDS1791522 1644 - 0.49635
NA Z1640 hypothetical proteinchromosome CDS1517107 1047 + 0.526266
NA Z0609 hypothetical proteinchromosome CDS581356 4386 + 0.587551
NA Z1538 putative pilin subunitchromosome CDS1431089 561 - 0.511586
NA Z1291 hypothetical proteinchromosome CDS1221650 477 + 0.48847
NA Z4971 putative major fimbrial subunitchromosome CDS4524740 537 - 0.463687
NA Z0402 putative beta-barrel outer membrane proteinchromosome CDS379670 4050 + 0.495309
NA Z4504 partial putative fimbrial proteinchromosome CDS4101655 492 + 0.48374
NA Z1886 putative capsid protein of prophage CP-933Xchromosome CDS1718285 1320 + 0.607576
ccmD Z3455 heme exporter protein Cchromosome CDS3100199 210 - 0.571429
clpP Z0542 ATP-dependent Clp protease proteolytic subunitchromosome CDS522731 624 + 0.503205
eae Z5110 intimin adherence proteinchromosome CDS4665441 2805 - 0.426025
eaeH Z0375 putative adhesinchromosome CDS353934 4254 + 0.524212
ecpD Z0151 putative fimbrial chaperone proteinchromosome CDS159884 732 - 0.483607
escC Z5126 escCchromosome CDS4680359 1539 + 0.373619
escJ Z5124 escJchromosome CDS4679326 573 + 0.368237
escN Z5119 escNchromosome CDS4674677 1341 - 0.443699
escR Z5135 escRchromosome CDS4686315 654 - 0.330275
escS Z5134 escSchromosome CDS4686046 270 - 0.385185
escT Z5133 escTchromosome CDS4685270 777 - 0.33462
escU Z5132 escUchromosome CDS4684240 1038 - 0.340077
escV Z5120 escVchromosome CDS4676001 2028 - 0.405325
espP L7020 putative exoprotein-precursorpO157 CDS11242 3903 + 0.442993
etpC L7032 type II secretion proteinpO157 CDS25799 876 + 0.423516
etpE L7034 type II secretion proteinpO157 CDS28642 1506 + 0.536521
etpF L7035 type II secretion proteinpO157 CDS30149 1224 + 0.565359
etpG L7036 type II secretion proteinpO157 CDS31403 435 + 0.514943
etpH L7037 type II secretion proteinpO157 CDS31834 555 + 0.533333
etpJ L7039 type II secretion proteinpO157 CDS32747 600 + 0.548333
etpK L7040 type II secretion proteinpO157 CDS33343 978 + 0.53681
etpM L7042 type II secretion proteinpO157 CDS35518 513 + 0.530214
exbB Z4359 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3958920 735 - 0.531973
exbD Z4358 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3958488 426 - 0.5
ffh Z3904 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS3536291 1362 - 0.54185
fhiA Z0290 flagellar biosynthesischromosome CDS286245 1740 - 0.585057
fimA Z5912 major type 1 subunit fimbrin (pilin)chromosome CDS5428009 549 + 0.517304
fimC Z5914 periplasmic chaperone, required for type 1 fimbriaechromosome CDS5429198 726 + 0.444904
fimD Z5915 outer membrane protein; export and assembly of type 1 fimbriae, interruptedchromosome CDS5429990 2637 + 0.483125
fimF Z5916 fimbrial morphologychromosome CDS5432636 531 + 0.493409
fimG Z5917 fimbrial morphologychromosome CDS5433179 504 + 0.525794
fimI Z5913 fimbrial proteinchromosome CDS5428514 648 + 0.496914
flgM Z1709 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1574065 294 - 0.517007
flgN Z1708 protein of flagellar biosynthesischromosome CDS1573644 417 - 0.479616
flhA Z2932 flagellar biosynthesis proteinchromosome CDS2640113 2079 - 0.545455
flhB Z2934 flagellar biosynthesis proteinchromosome CDS2642184 1149 - 0.547433
fliE Z3027 flagellar basal body proteinchromosome CDS2712396 315 - 0.536508
fliF Z3028 flagellar M-ring proteinchromosome CDS2712925 1659 + 0.545509
fliH Z3030 flagellar assembly proteinchromosome CDS2715543 708 + 0.572034
fliI Z3031 flagellum-specific ATP synthasechromosome CDS2716195 1491 + 0.585513
fliJ Z3032 flagellar proteinchromosome CDS2717704 444 + 0.529279
fliN Z3036 flagellar motor switch proteinchromosome CDS2720847 414 + 0.550725
fliP Z3038 flagellar biosynthesis proteinchromosome CDS2721628 738 + 0.533875
fliQ Z3039 flagellar biosynthesis proteinchromosome CDS2722375 270 + 0.503704
fliR Z3040 flagellar biosynthesis proteinchromosome CDS2722652 786 + 0.477099
fliS Z3015 flagellar protein FliSchromosome CDS2703036 411 + 0.491484
ftsY Z4838 cell division membrane proteinchromosome CDS4389218 1497 - 0.53507
hofB Z0117 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakechromosome CDS120204 1386 - 0.540404
hofC Z0116 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakechromosome CDS119012 1203 - 0.522028
hofQ Z4744 putative transport porteinchromosome CDS4298883 1239 - 0.54318
hopD Z4693 putative leader peptidasechromosome CDS4255883 468 + 0.478632
htrE Z0150 putative fimbrial usher proteinchromosome CDS157242 2499 - 0.488595
lepB Z3850 leader peptidase (signal peptidase I)chromosome CDS3494559 975 - 0.516923
lspA Z0031 signal peptidase IIchromosome CDS29619 495 + 0.533333
nfrB Z0699 bacteriophage N4 receptor, outer membrane proteinchromosome CDS661792 2238 - 0.524129
ppdA Z4143 prepilin peptidase dependent protein Achromosome CDS3753405 471 - 0.535032
ppdB Z4142 prepilin peptidase dependent protein Bchromosome CDS3752851 564 - 0.515957
ppdD Z0118 prelipin peptidase dependent proteinchromosome CDS121599 441 - 0.53288
prlA Z4670 preprotein translocase SecYchromosome CDS4245000 1332 - 0.496997
secA Z0108 translocasechromosome CDS112885 2706 + 0.521803
secB Z5036 export protein SecBchromosome CDS4599475 468 - 0.510684
secD Z0507 protein export protein SecDchromosome CDS491278 1848 + 0.532468
secE Z5554 translocasechromosome CDS5055121 384 + 0.546875
secF Z0508 protein export protein SecFchromosome CDS493136 972 + 0.51749
secG Z4537 protein-export membrane proteinchromosome CDS4131887 333 - 0.504505
sfmA Z0686 putative fimbrial-like proteinchromosome CDS650325 576 + 0.439236
sfmC Z0688 putative chaperonechromosome CDS651120 693 + 0.421356
sfmD Z0689 putative outer membrane protein, export functionchromosome CDS651843 2610 + 0.477012
sfmF Z0691 putative fimbrial proteinchromosome CDS655483 516 + 0.496124
smf Z4656 hypothetical proteinchromosome CDS4234670 1125 - 0.508444
sohB Z2538 putative proteasechromosome CDS2256088 1050 - 0.504762
sppA Z2799 protease IV, a signal peptide peptidasechromosome CDS2523552 1857 + 0.519655
spy Z2775 periplasmic protein related to spheroblast formationchromosome CDS2499855 486 - 0.506173
tatA Z5358 twin argininte translocase protein Achromosome CDS4886976 312 + 0.445513
tatB Z5359 sec-independent translocasechromosome CDS4887369 438 + 0.557078
tatC Z5360 putative integral membrane proteinchromosome CDS4887809 777 + 0.517375
tatE Z0772 twin argininte translocase protein Achromosome CDS740084 204 + 0.5
tolB Z0908 translocation protein TolB precursorchromosome CDS863819 1293 + 0.533643
tolC Z4392 outer membrane channel precursor proteinchromosome CDS3991518 1488 + 0.515457
tolQ Z0905 inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicinschromosome CDS861313 693 + 0.502164
tolR Z0906 putative inner membrane protein, involved in the tonB-independent uptake of group A colicinschromosome CDS862009 429 + 0.515152
yadN Z0152 putative fimbrial proteinchromosome CDS160696 606 - 0.458746
yagZ Z0360 hypothetical proteinchromosome CDS342493 588 - 0.528912
yahO Z0425 hypothetical proteinchromosome CDS403185 276 + 0.387681
yajC Z0506 preprotein translocase subunit YajCchromosome CDS490918 333 + 0.495495
ybbJ Z0641 hypothetical proteinchromosome CDS607892 459 - 0.579521
ybgD Z0872 putative fimbriae structural proteinchromosome CDS830531 567 - 0.45679
ybgP Z0869 putative chaperonechromosome CDS827276 732 - 0.525956
ybgQ Z0871 putative outer membrane usher proteinchromosome CDS828310 2163 - 0.507166
ycbF Z1293m PapD-like chaperone involved in fimbrial biogenesischromosome CDS1222615 738 + 0.51355
ycbQ Z1286 putative fimbrial-like proteinchromosome CDS1216554 549 + 0.420765
ycbR Z1287 putative chaperonechromosome CDS1217185 702 + 0.457265
ychE Z2017 putative channel proteinchromosome CDS1834577 648 + 0.481481
ydeB Z2172 hypothetical proteinchromosome CDS1945151 666 + 0.503003
ydeK Z2195 hypothetical proteinchromosome CDS1966464 4032 + 0.492808
yehB Z3277 putative outer membrane proteinchromosome CDS2934385 2481 - 0.448206
yehC Z3278 putative chaperone proteinchromosome CDS2936881 723 - 0.394191
yehD Z3279 putative fimbrial-like proteinchromosome CDS2937643 543 - 0.38674
yejO Z3449 putative ATP-binding component of a transport systemchromosome CDS3092587 2511 - 0.48626
yfcS Z3599 putative fimbrial chaperonechromosome CDS3247987 759 - 0.527009
yggR Z4295 putative protein transportchromosome CDS3902918 1026 - 0.546784
yhgN Z4798 hypothetical proteinchromosome CDS4358092 594 + 0.503367
yidC Z5197 inner membrane protein translocase component YidCchromosome CDS4740292 1647 + 0.536733
yiiO Z5458 hypothetical proteinchromosome CDS4974541 504 + 0.498016
yjaI Z5578 hypothetical proteinchromosome CDS5078834 567 - 0.516755
yjcP Z5680 putative enzymechromosome CDS5182234 1467 - 0.558282
ylcB Z0711 putative resistance proteinchromosome CDS678042 1383 + 0.5141
yohG Z3387 putative outer membrane proteinchromosome CDS3027503 1197 - 0.553885
ypjA Z3948 putative ATP-binding component of a transport systemchromosome CDS3567614 4587 - 0.493569
yraH Z4498 putative fimbrial-like proteinchromosome CDS4096182 585 + 0.459829
yraI Z4499 putative chaperonechromosome CDS4096846 696 + 0.441092
yraJ Z4500 putative outer membrane proteinchromosome CDS4097570 2517 + 0.474374
yrfC Z4748 hypothetical proteinchromosome CDS4300851 540 - 0.546296
 
Escherichia coli O157:H7 str. Sakai, Sakai
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECs0744 putative fimbrial-like proteinchromosome CDS828877 582 - 0.453608
NA ECs0540 putative outer membrane transport proteinchromosome CDS579895 1356 + 0.515487
NA ECs4279 hypothetical proteinchromosome CDS4290870 594 + 0.503367
NA ECs4022 putative outer membrane proteinchromosome CDS4030354 2517 + 0.474374
NA ECs0110 HofCchromosome CDS119011 1203 - 0.522028
NA ECs4559 gamma intiminchromosome CDS4596458 2805 - 0.426025
NA ECs0596 putative fimbrial-like proteinchromosome CDS655789 516 + 0.496124
NA ECs2373 hypothetical proteinchromosome CDS2344582 1257 - 0.516309
NA ECs4430 putative fimbrial chaperone protein precursorchromosome CDS4456760 699 - 0.426323
NA ECs1396 AidA-Ichromosome CDS1444150 2850 + 0.57193
NA ECs1022 putative chaperonechromosome CDS1127962 702 + 0.457265
NA ECs3827 putative protein transportchromosome CDS3835606 1026 - 0.546784
NA ECs3725 EpaPchromosome CDS3725005 666 - 0.345345
NA ECs4839 hypothetical proteinchromosome CDS4905777 504 + 0.498016
NA ECs1449 FlgMchromosome CDS1488979 294 - 0.517007
NA ECs4768 Sec-independent protein translocasechromosome CDS4819045 777 + 0.517375
NA ECs0111 HofBchromosome CDS120203 1386 - 0.540404
NA ECs4188 HopDchromosome CDS4188661 468 + 0.478632
NA ECs1021 putative fimbrial-like proteinchromosome CDS1127331 549 + 0.420765
NA ECs2590 flagellar biosynthesis proteinchromosome CDS2566973 1149 - 0.548303
NA ECs2960 putative protease/scaffold proteinchromosome CDS2913472 1107 - 0.531165
NA ECs3217 putative fimbrial-like proteinchromosome CDS3176535 549 - 0.448087
NA ECs4313 FtsYchromosome CDS4321994 1497 - 0.53507
NA ECs2109 putative fimbrial-like proteinchromosome CDS2109555 531 - 0.455744
NA ECs5275 FimCchromosome CDS5399246 675 + 0.451852
NA ECs3731 EivAchromosome CDS3729231 2061 - 0.373605
NA ECs0112 prelipin peptidase dependent proteinchromosome CDS121598 441 - 0.53288
NA ECs0350 putative adhesinchromosome CDS368426 1095 - 0.426484
NA ECs4580 EscUchromosome CDS4615257 1038 - 0.340077
NA ECs0023 putative fimbrial chaperonechromosome CDS21761 684 - 0.365497
NA ECs5276 FimDchromosome CDS5399987 2637 + 0.483504
NA ECs4586 hypothetical proteinchromosome CDS4619226 324 - 0.314815
NA ECs2732 putative head-tail preconnector proteinchromosome CDS2683952 1506 - 0.604914
NA ECs2110 putative outer membrane proteinchromosome CDS2110099 1149 - 0.448216
NA ECs0743 truncated outer membrane proteinchromosome CDS826656 2172 - 0.507366
NA ECs0022 putative outer membrane usher protein precursorchromosome CDS19298 2451 - 0.410037
NA ECs2679 flagellar assembly proteinchromosome CDS2640331 708 + 0.572034
NA ECs1382 HecB-like proteinchromosome CDS1433646 735 + 0.534694
NA ECs4767 sec-independent translocasechromosome CDS4818527 516 + 0.552326
NA ECs2136 hypothetical proteinchromosome CDS2142655 666 - 0.504505
NA ECs2113 putative type 1 fimbrial protein precursorchromosome CDS2113863 564 - 0.468085
NA ECs0601 NfrBchromosome CDS662098 2238 - 0.524129
NA ECs0145 putative fimbrial-like proteinchromosome CDS160695 597 - 0.460637
NA ECs2449 spheroplast protein Ychromosome CDS2424653 486 - 0.506173
NA ECs0610 putative resistance proteinchromosome CDS678260 1383 + 0.5141
NA ECs2006 putative BigA-like proteinchromosome CDS1984119 3036 + 0.488801
NA ECs4669 putative fimbrial chaperonechromosome CDS4703495 384 - 0.380208
NA ECs0257 FhiAchromosome CDS286244 1740 - 0.585057
NA ECs2176 putative minor capsid protein precursorchromosome CDS2176525 1320 - 0.607576
NA ECs4925 hypothetical proteinchromosome CDS5010088 426 - 0.535211
NA ECs0323 hypothetical proteinchromosome CDS342492 588 - 0.528912
NA ECs2116 putative ATP-binding component of a transport system and adhesin proteinchromosome CDS2116580 1401 - 0.529622
NA ECs3473 signal recognition particle protein Ffhchromosome CDS3466442 1362 - 0.54185
NA ECs5277 FimFchromosome CDS5402633 531 + 0.493409
NA ECs1707 hypothetical proteinchromosome CDS1700116 1644 - 0.49635
NA ECs4665 putative fimbrial proteinchromosome CDS4698445 1083 - 0.437673
NA ECs0593 putative chaperonechromosome CDS651426 693 + 0.421356
NA ECs1279 putative chaperone proteinchromosome CDS1346530 723 - 0.457815
NA ECs4426 putative fimbrial protein precursorchromosome CDS4452553 531 - 0.512241
NA ECs0024 putative fimbrial proteinchromosome CDS22494 534 - 0.391386
NA ECs5273 FimAchromosome CDS5398006 549 + 0.517304
NA ECs3730 type III secretion system ATPasechromosome CDS3727907 1320 - 0.446212
NA ECs3087 heme exporter protein Cchromosome CDS3028930 210 - 0.571429
NA ECs4670 putative type 1 fimbrial proteinchromosome CDS4703982 603 - 0.44942
NA ECs4667 putative outer membrane usher protein precursorchromosome CDS4700637 2535 - 0.485207
NA ECs4054 protein-export membrane proteinchromosome CDS4064671 333 - 0.504505
NA ECs2909 hypothetical proteinchromosome CDS2860458 348 + 0.408046
NA ECs1282 hemagglutinin/hemolysin-related proteinchromosome CDS1349940 3807 + 0.492251
NA ECs1742 putative channel proteinchromosome CDS1742641 648 + 0.481481
NA ECs1958 putative antitermination proteinchromosome CDS1939874 555 + 0.463063
NA ECs1027 putative fimbrial-like proteinchromosome CDS1132863 564 + 0.475177
NA ECs0548 adhesin/invasin-like proteinchromosome CDS606274 1017 - 0.485742
NA ECs3221 putative outer membrane proteinchromosome CDS3178812 2640 - 0.545455
NA ECs4236 hypothetical proteinchromosome CDS4233629 540 - 0.546296
NA ECs1280 putative major pilin proteinchromosome CDS1347317 561 - 0.511586
NA ECs5278 FimGchromosome CDS5403176 504 + 0.525794
NA ECs4569 Tchromosome CDS4607018 2028 - 0.405325
NA ECs1667 hypothetical proteinchromosome CDS1664690 705 + 0.512057
NA ECs0459 protein export protein SecDchromosome CDS491276 1848 + 0.532468
NA ECs5290 putative invasinchromosome CDS5416459 4740 - 0.490928
NA ECs4021 putative chaperonechromosome CDS4029630 696 + 0.441092
NA ECs4568 EscNchromosome CDS4605694 1341 - 0.443699
NA ECs0594 putative outer membrane proteinchromosome CDS652149 2610 + 0.477012
NA ECs2680 flagellum-specific ATP synthasechromosome CDS2641100 1374 + 0.583697
NA ECs0383 hypothetical proteinchromosome CDS403183 276 + 0.387681
NA ECs4165 preprotein translocase SecYchromosome CDS4177778 1332 - 0.496997
NA ECs0551 hypothetical proteinchromosome CDS608198 456 - 0.58114
NA ECs2676 flagellar basal body proteinchromosome CDS2637184 315 - 0.536508
NA ECs4026 disrupted fimbrial proteinchromosome CDS4034457 474 + 0.483122
NA ECs3434 signal peptidase Ichromosome CDS3424720 975 - 0.516923
NA ECs5062 hypothetical proteinchromosome CDS5152249 1467 - 0.558282
NA ECs0773 TolRchromosome CDS860355 429 + 0.515152
NA ECs4280 putative DNA processing chain Achromosome CDS4291509 1203 - 0.502909
NA ECs3721 type III secretion proteinchromosome CDS3722835 1122 - 0.33066
NA ECs3025 putative channel/filament proteinschromosome CDS2956236 1437 - 0.549756
NA ECs1633 minor capsid proteinchromosome CDS1634310 1320 + 0.607576
NA ECs4904 translocasechromosome CDS4986375 384 + 0.546875
NA ECs0362 AidA-I adhesin-like proteinchromosome CDS379734 3984 + 0.49749
NA ECs2681 flagellar proteinchromosome CDS2642492 444 + 0.529279
NA ECs1865 putative outer membrane channel proteinchromosome CDS1857164 1374 + 0.541485
NA ECs5274 FimIchromosome CDS5398511 648 + 0.498457
NA ECs3890 ExbBchromosome CDS3891607 735 - 0.533333
NA ECs3220 putative chaperonechromosome CDS3178031 759 - 0.528327
NA ECs2664 flagellar protein FliSchromosome CDS2627824 411 + 0.493917
NA ECs1448 FlgNchromosome CDS1488558 417 - 0.479616
NA ECs0542 hypothetical proteinchromosome CDS585946 15876 + 0.611426
NA ECs1283 hemolysin activator-related proteinchromosome CDS1353835 1620 + 0.424691
NA ECs2117 hypothetical proteinchromosome CDS2117977 4032 - 0.493056
NA ECs0541 hypothetical proteinchromosome CDS581353 4386 + 0.587779
NA ECs4431 putative fimbrial major protein precursorchromosome CDS4457511 537 - 0.465549
NA ECs2776 hypothetical proteinchromosome CDS2717452 4038 + 0.496285
NA ECs3515 putative ATP-binding component of a transport systemchromosome CDS3500324 4716 - 0.493427
NA ECs2689 flagellar biosynthesis proteinchromosome CDS2647439 786 + 0.477099
NA ECs1028 hypothetical proteinchromosome CDS1133392 570 + 0.515789
NA ECs2472 protease IVchromosome CDS2448349 1857 + 0.521271
NA ECs0592 putative fimbrial-like proteinchromosome CDS650664 543 + 0.445672
NA ECs2917 putative fimbrial-like proteinchromosome CDS2867412 543 - 0.38674
NA ECs3889 ExbDchromosome CDS3891175 426 - 0.5
NA ECs3733 EivGchromosome CDS3732434 1704 - 0.387911
NA ECs2589 flagellar biosynthesis proteinchromosome CDS2564902 2079 - 0.545455
NA ECs3683 prepilin peptidase dependent protein Achromosome CDS3686107 471 - 0.535032
NA ECs2677 flagellar M-ring proteinchromosome CDS2637713 1659 + 0.545509
NA ECs0491 ATP-dependent Clp protease proteolytic subunitchromosome CDS522729 624 + 0.503205
NA ECs4233 putative transport porteinchromosome CDS4231661 1239 - 0.54318
NA ECs0336 putative invasinchromosome CDS353931 4254 + 0.524212
NA ECs1278 putative outer membrane usher proteinchromosome CDS1343955 2523 - 0.512882
NA ECs2108 putative fimbrial-like proteinchromosome CDS2109039 504 - 0.446429
NA ECs4480 hypothetical proteinchromosome CDS4519109 4767 + 0.503671
NA ECs4640 inner membrane protein translocase component YidCchromosome CDS4671309 1647 + 0.536733
NA ECs4583 EscRchromosome CDS4617332 654 - 0.331804
NA ECs2775 hypothetical proteinchromosome CDS2713479 4008 + 0.505988
NA ECs2112 putative fimbrial chaperone protein precursorchromosome CDS2112792 711 - 0.459916
NA ECs4487 export protein SecBchromosome CDS4530493 468 - 0.512821
NA ECs4581 EscTchromosome CDS4616287 777 - 0.33462
NA ECs2688 flagellar biosynthesis proteinchromosome CDS2647162 270 + 0.503704
NA ECs0143 putative outer membrane porin proteinchromosome CDS157241 2601 - 0.489043
NA ECs3724 EpaQchromosome CDS3724734 261 - 0.383142
NA ECs1844 putative proteasechromosome CDS1830039 1050 + 0.504762
NA ECs4151 hypothetical proteinchromosome CDS4167448 1125 - 0.509333
NA ECs2685 flagellar motor switch proteinchromosome CDS2645634 414 + 0.550725
NA ECs3716 EprKchromosome CDS3719204 735 - 0.364626
NA ECs3682 prepilin peptidase dependent protein Bchromosome CDS3685553 564 - 0.515957
NA ECs4575 EscCchromosome CDS4611376 1539 + 0.373619
NA ECs0772 TolQchromosome CDS859659 693 + 0.502164
NA ECs1108 putative head-tail preconnector proteinchromosome CDS1193749 1506 + 0.604914
NA ECs2916 putative chaperonechromosome CDS2866650 675 - 0.38963
NA ECs4582 EscSchromosome CDS4617063 270 - 0.385185
NA ECs0144 putative pilin chaperonechromosome CDS159883 726 - 0.483471
NA ECs0847 hypothetical proteinchromosome CDS925662 993 + 0.442095
NA ECs0829 putative protease/scaffold proteinchromosome CDS907957 2124 + 0.514124
NA ECs1276 putative chaperone proteinchromosome CDS1341919 630 - 0.461905
NA ECs2687 flagellar biosynthesis proteinchromosome CDS2646415 738 + 0.533875
NA ECs4020 putative fimbrial-like proteinchromosome CDS4028966 585 + 0.459829
NA ECs2193 putative ante-terminator proteinchromosome CDS2191067 555 - 0.452252
NA ECs3726 type III secretion proteinchromosome CDS3725660 987 - 0.356636
NA ECs0102 translocasechromosome CDS112884 2706 + 0.521803
NA ECs4573 EscJchromosome CDS4610343 573 + 0.368237
NA ECs2915 putative outer membrane proteinchromosome CDS2864154 2481 - 0.448206
NA ECs3081 putative ATP-binding component of a transport systemchromosome CDS3021318 2511 - 0.486659
NA ECs0742 putative chaperonechromosome CDS825622 732 - 0.525956
espP pO157p78 EspPpO157 CDS80757 3903 + 0.442993
etpC pO157p02 EtpCpO157 CDS2589 876 + 0.423516
etpD pO157p03 EtpDpO157 CDS3675 1758 + 0.511945
etpE pO157p04 EtpEpO157 CDS5432 1506 + 0.536521
etpF pO157p05 EtpFpO157 CDS6939 1224 + 0.565359
etpG pO157p06 EtpGpO157 CDS8193 435 + 0.512644
etpH pO157p07 EtpHpO157 CDS8624 555 + 0.533333
etpI pO157p08 EtpIpO157 CDS9193 348 + 0.58046
etpJ pO157p09 EptJpO157 CDS9537 600 + 0.548333
etpK pO157p10 EtpKpO157 CDS10133 978 + 0.53681
etpL pO157p11 EtpLpO157 CDS11473 849 + 0.570082
etpM pO157p12 EtpMpO157 CDS12308 513 + 0.530214
etpN pO157p13 EptNpO157 CDS12995 717 + 0.527197
lspA ECs0030 signal peptidase IIchromosome CDS29618 495 + 0.533333
secF ECs0460 protein export protein SecFchromosome CDS493134 972 + 0.51749
tatA ECs4766 twin argininte translocase protein Achromosome CDS4818254 270 + 0.455556
tatE ECs0665 twin argininte translocase protein Achromosome CDS740303 204 + 0.5
tolB ECs0775 translocation protein TolB precursorchromosome CDS862165 1293 + 0.533643
tolC ECs3923 outer membrane channel precursor proteinchromosome CDS3924203 1488 + 0.516129
yajC ECs0458 preprotein translocase subunit YajCchromosome CDS490916 333 + 0.495495
 
Escherichia coli UTI89, UTI89
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA UTI89_C0630 hypothetical proteinchromosome CDS641399 204 + 0.5
NA UTI89_C1725 putative phage-related secreted proteinchromosome CDS1653886 1245 - 0.451406
aufB UTI89_C3935 Auf fimbiral chaperone 1 precursorchromosome CDS3824245 780 - 0.382051
ccmD UTI89_C2476 heme exporter protein Cchromosome CDS2432257 210 - 0.566667
clpP UTI89_C0465 ATP-dependent proteolytic subunit of clpA-ClpP serine protease, heat shock protein F21.5chromosome CDS470795 624 + 0.501603
ecpD UTI89_C0154 periplasmic chaperone EcpD precursorchromosome CDS161498 741 - 0.442645
exbB UTI89_C3426 TonB-dependent enterochelin uptake proteinchromosome CDS3361843 735 - 0.526531
exbD UTI89_C3425 TonB-dependent enterochelin uptake proteinchromosome CDS3361411 426 - 0.483568
ffh UTI89_C2943 signal recognition particle proteinchromosome CDS2890522 1362 - 0.542584
fimC UTI89_C5013 periplasmic chaperone protein FimC precursorchromosome CDS4909052 726 + 0.444904
flgM UTI89_C1196 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1174803 294 - 0.517007
flhB UTI89_C2083 flagellar biosynthetic protein FlhBchromosome CDS1990945 1149 - 0.550914
fliE UTI89_C2137 flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junctionchromosome CDS2038797 345 - 0.53913
fliQ UTI89_C2149 flagellar biosynthetic protein FliQchromosome CDS2048713 270 + 0.507407
fliS UTI89_C2126 flagellar protein FliSchromosome CDS2029310 411 + 0.481752
fmlB UTI89_C1718 periplasmic chaperone FmlB proteinchromosome CDS1649274 711 - 0.452883
hofF UTI89_C3782 putative general secretion pathway protein Fchromosome CDS3677627 1197 + 0.506266
hofG UTI89_C3783 putative general secretion pathway protein G precursorchromosome CDS3678833 438 + 0.493151
lepB UTI89_C2890 signal peptidase Ichromosome CDS2846077 975 - 0.52
lspA UTI89_C0029 lipoprotein signal peptidasechromosome CDS26734 495 + 0.523232
marC UTI89_C1748 multiple antibiotic resistance protein MarCchromosome CDS1674957 666 - 0.504505
ppdA UTI89_C3227 prepilin peptidase dependent protein A precursorchromosome CDS3154143 471 - 0.541401
secD UTI89_C0430 protein-export membrane protein SecDchromosome CDS442030 1848 + 0.531385
secE UTI89_C3840 inner membrane preprotein translocasechromosome CDS3727538 384 - 0.549479
secF UTI89_C0431 protein-export membrane protein SecFchromosome CDS443843 1017 + 0.519174
secG UTI89_C3607 protein-export membrane protein SecGchromosome CDS3542003 381 - 0.501312
secY UTI89_C3746 putative ATPase subunit of translocasechromosome CDS3660576 1332 - 0.496246
smf UTI89_C3730 hypothetical proteinchromosome CDS3650237 1125 - 0.505778
sppA UTI89_C1962 protease IV, a signal peptide peptidasechromosome CDS1881084 1857 + 0.518578
tatB UTI89_C4424 sec-independent protein twin-arginine translocase subunit tatBchromosome CDS4308645 516 + 0.544574
tolB UTI89_C0736 periplasmic protein involved in the tonB-independent uptake of group A colicinschromosome CDS741465 1296 + 0.532407
tolQ UTI89_C0733 TolQ proteinchromosome CDS738896 693 + 0.503608
tolR UTI89_C0734 putative inner membrane protein TolRchromosome CDS739592 429 + 0.515152
yadK UTI89_C0150 putative fimbrial subunit YadK precursorchromosome CDS157049 597 - 0.433836
yadN UTI89_C0155 putative fimbrial subunit YadN precursorchromosome CDS162347 615 - 0.426016
yajC UTI89_C0429 hypothetical protein YajCchromosome CDS441640 363 + 0.46832
ychE UTI89_C1439 putative channel proteinchromosome CDS1373667 648 + 0.476852
yehC UTI89_C2384 putative periplasmic chaperone YehC precursorchromosome CDS2331684 675 - 0.38963
yheE UTI89_C3779 probable general secretion pathway protein Cchromosome CDS3673388 816 + 0.417892
yheF UTI89_C3780 probable general secretion pathway protein Dchromosome CDS3674175 1965 + 0.498219
yhgN UTI89_C3943 hypothetical protein YhgNchromosome CDS3837232 594 + 0.503367
yidC UTI89_C4258 60 KD inner-membrane proteinchromosome CDS4146644 1647 + 0.535519
yjjA UTI89_C5066 hypothetical protein YjjA precursorchromosome CDS4977463 498 - 0.491968
yqeC UTI89_C3261 hypothetical protein YqeCchromosome CDS3192953 771 - 0.490272
 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ccmD cytochrome c biogenesis proteinchromosome CDS2298711 210 - 0.571429
clpP proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteaseschromosome CDS455901 624 + 0.511218
cpxP periplasmic protein combats stresschromosome CDS3530361 501 - 0.500998
cusC copper/silver efflux system, outer membrane componentchromosome CDS594823 1374 + 0.512373
ecpD predicted periplasmic pilin chaperonechromosome CDS155461 741 - 0.443995
exbB membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3149906 735 - 0.530612
exbD membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3149474 426 - 0.502347
ffh Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)chromosome CDS2745090 1362 - 0.54185
fimA major type 1 subunit fimbrinchromosome CDS4547795 549 + 0.517304
fimC chaperone, periplasmicchromosome CDS4548984 726 + 0.444904
fimD outer membrane usher protein, type 1 fimbrial synthesischromosome CDS4549776 2637 + 0.486159
fimF minor component of type 1 fimbriaechromosome CDS4552422 531 + 0.495292
fimG minor component of type 1 fimbriaechromosome CDS4552965 504 + 0.52381
flgM anti-sigma factor for FliA (sigma 28)chromosome CDS1131412 294 - 0.527211
flgN export chaperone for FlgK and FlgLchromosome CDS1130991 417 - 0.482014
flhA predicted flagellar export pore proteinchromosome CDS1964686 2079 - 0.548822
flhB predicted flagellar export pore proteinchromosome CDS1966757 1149 - 0.549173
fliE flagellar basal-body componentchromosome CDS2014837 315 - 0.539683
fliF flagellar basal-body MS-ring and collar proteinchromosome CDS2015366 1659 + 0.546112
fliI flagellum-specific ATP synthasechromosome CDS2018691 1374 + 0.585881
fliJ flagellar proteinchromosome CDS2020083 444 + 0.515766
fliN flagellar motor switching and energizing componentchromosome CDS2023225 414 + 0.550725
fliP flagellar biosynthesis proteinchromosome CDS2024006 738 + 0.531165
fliQ flagellar biosynthesis proteinchromosome CDS2024753 270 + 0.503704
fliR flagellar export pore proteinchromosome CDS2025030 786 + 0.474555
fliS flagellar protein potentiates polymerizationchromosome CDS2007440 411 + 0.498783
flu antigen 43 (Ag43) phase-variable biofilm formation autotransporterchromosome CDS2073676 3120 + 0.582372
ftsY fused Signal Recognition Particle (SRP) receptorchromosome CDS4036172 1494 + 0.534806
gspC general secretory pathway component, crypticchromosome CDS4184023 816 - 0.42402
gspE general secretory pathway component, crypticchromosome CDS4180596 1482 - 0.524966
gspF general secretory pathway component, crypticchromosome CDS4179403 1197 - 0.510443
gspG pseudopilin, cryptic, general secretion pathwaychromosome CDS4178956 438 - 0.486301
gspH predicted general secretory pathway component, crypticchromosome CDS4178439 510 - 0.560784
gspJ predicted general secretory pathway component, crypticchromosome CDS4177485 588 - 0.503401
gspK general secretory pathway component, crypticchromosome CDS4176509 984 - 0.502033
gspO bifunctional prepilin leader peptidase and methylasechromosome CDS4174196 678 - 0.504425
hofB conserved hypothetical protein with nucleoside triphosphate hydrolase domainchromosome CDS115714 1386 - 0.534632
hofC assembly protein in type IV pilin biogenesis, transmembrane proteinchromosome CDS114522 1203 - 0.519534
hofQ predicted fimbrial transporterchromosome CDS4119713 1239 + 0.544794
htrE predicted outer membrane usher proteinchromosome CDS152829 2598 - 0.43341
lepB leader peptidasechromosome CDS2702991 975 - 0.52
lspA prolipoprotein signal peptidasechromosome CDS25207 495 + 0.535354
marC predicted transporterchromosome CDS1619957 666 - 0.510511
nfrB bacteriophage N4 receptor, inner membrane subunitchromosome CDS590164 2238 - 0.525022
ppdA hypothetical proteinchromosome CDS2962363 471 - 0.541401
ppdB hypothetical proteinchromosome CDS2961809 564 - 0.52305
ppdD predicted major pilin subunitchromosome CDS117109 441 - 0.530612
secA preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core transloconchromosome CDS108279 2706 + 0.524021
secB protein export chaperonechromosome CDS3856287 468 + 0.508547
secD SecYEG protein translocase auxillary subunitchromosome CDS426871 1848 + 0.531926
secE preprotein translocase membrane subunitchromosome CDS3458940 384 - 0.549479
secF SecYEG protein translocase auxillary subunitchromosome CDS428729 972 + 0.516461
secG preprotein translocase membrane subunitchromosome CDS3322028 333 - 0.495495
secY preprotein translocase membrane subunitchromosome CDS4196319 1332 + 0.496997
sfmA predicted fimbrial-like adhesin proteinchromosome CDS557435 543 + 0.445672
sfmC pilin chaperone, periplasmicchromosome CDS558197 693 + 0.425685
sfmD predicted outer membrane export usher proteinchromosome CDS558920 2604 + 0.478111
sfmF predicted fimbrial-like adhesin proteinchromosome CDS562553 516 + 0.5
smf hypothetical proteinchromosome CDS4206856 1125 + 0.509333
sohB predicted inner membrane peptidasechromosome CDS1331046 1050 + 0.505714
sppA protease IVchromosome CDS1850551 1857 + 0.517501
spy envelope stress induced periplasmic proteinchromosome CDS1826854 486 - 0.50823
tatA TatABCE protein translocation system subunitchromosome CDS3614467 270 - 0.455556
tatB TatABCE protein translocation system subunitchromosome CDS3613948 516 - 0.554264
tatC TatABCE protein translocation system subunitchromosome CDS3613169 777 - 0.516088
tatE TatABCE protein translocation system subunitchromosome CDS659369 204 + 0.5
tolB periplasmic proteinchromosome CDS778162 1293 + 0.531322
tolQ membrane spanning protein in TolA-TolQ-TolR complexchromosome CDS775575 693 + 0.50505
tolR membrane spanning protein in TolA-TolQ-TolR complexchromosome CDS776271 429 + 0.517483
yadK predicted fimbrial-like adhesin proteinchromosome CDS151003 597 - 0.413735
yadN predicted fimbrial-like adhesin proteinchromosome CDS156299 585 - 0.447863
yagZ hypothetical proteinchromosome CDS309308 588 - 0.528912
yajC SecYEG protein translocase auxillary subunitchromosome CDS426511 333 + 0.495495
ybbJ conserved inner membrane proteinchromosome CDS513625 456 - 0.574561
ybgD predicted fimbrial-like adhesin proteinchromosome CDS752651 567 - 0.467372
ybgP predicted assembly proteinchromosome CDS749401 729 - 0.477366
ycbR predicted periplasmic pilin chaperonechromosome CDS998912 702 + 0.450142
ycbS predicted outer membrane usher proteinchromosome CDS999638 2601 + 0.478662
ycbU predicted fimbrial-like adhesin proteinchromosome CDS1003311 543 + 0.471455
ycgV predicted adhesinchromosome CDS1254662 2868 - 0.497908
ychE predicted inner membrane proteinchromosome CDS1300175 648 + 0.478395
ydeK predicted lipoproteinchromosome CDS1595823 3978 - 0.493213
ydeR predicted fimbrial-like adhesin proteinchromosome CDS1589507 504 - 0.448413
ydeS predicted fimbrial-like adhesin proteinchromosome CDS1590023 531 - 0.448211
ydeT hypothetical proteinchromosome CDS1590567 1149 - 0.445605
ydhQ hypothetical proteinchromosome CDS1746585 1257 - 0.513922
yehB predicted outer membrane proteinchromosome CDS2191764 2481 - 0.455058
yehC predicted periplasmic pilin chaperonechromosome CDS2194260 720 - 0.393056
yehD predicted fimbrial-like adhesin proteinchromosome CDS2195014 543 - 0.405157
yejO predicted autotransporter outer membrane proteinchromosome CDS2289724 2511 - 0.483473
yfaL adhesinchromosome CDS2345087 3753 - 0.513722
yfcP predicted fimbrial-like adhesin proteinchromosome CDS2455497 540 - 0.487037
yfcS predicted periplasmic pilus chaperonechromosome CDS2457030 753 - 0.50996
yfcT predicted outer membrane export usher proteinchromosome CDS2457802 897 - 0.532887
yfcU predicted export usher proteinchromosome CDS2458711 1737 - 0.510075
yghD predicted secretion pathway M-type protein, membrane anchoredchromosome CDS3109246 537 - 0.532588
yghF predicted secretion pathway protein, C-type proteinchromosome CDS3110710 867 - 0.512111
ygiL predicted fimbrial-like adhesin proteinchromosome CDS3184070 552 + 0.436594
yhcA predicted periplasmic chaperone proteinchromosome CDS3361967 675 + 0.416296
yhcD predicted outer membrane proteinchromosome CDS3362662 2382 + 0.45508
yhgN predicted antibiotic transporterchromosome CDS4064751 594 - 0.5
yidC cytoplasmic insertase into membrane protein, Sec systemchromosome CDS3753693 1647 - 0.536733
yjcP predicted outer membrane factor of efflux pumpchromosome CDS4303043 1467 - 0.557601
yqiG predicted outer membrane usher proteinchromosome CDS3186056 2466 + 0.422141
yraH predicted fimbrial-like adhesin proteinchromosome CDS3287281 585 + 0.451282
yraI predicted periplasmic pilin chaperonechromosome CDS3287945 696 + 0.442529
yraJ predicted outer membrane proteinchromosome CDS3288669 2517 + 0.475963
yraK predicted fimbrial-like adhesin proteinchromosome CDS3291196 1092 + 0.478938
yrfC predicted fimbrial assembly proteinchromosome CDS4118444 540 + 0.553704
zraP Zn-binding periplasmic proteinchromosome CDS3434993 426 + 0.535211
 
Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu4453 hypothetical proteinchromosome CDS5206762 1422 + 0.457103
NA plu3719 hypothetical proteinchromosome CDS4383189 1665 - 0.556156
NA plu1367 hypothetical proteinchromosome CDS1629806 8886 - 0.564821
NA plu1368 hypothetical proteinchromosome CDS1638740 1665 - 0.545345
NA plu0091 hypothetical proteinchromosome CDS86004 1035 - 0.406763
NA plu1734 hypothetical proteinchromosome CDS2069910 1176 + 0.469388
NA plu3788 hypothetical proteinchromosome CDS4451122 984 + 0.470528
NA plu0094 hypothetical proteinchromosome CDS88117 831 - 0.45728
NA plu2519 hypothetical proteinchromosome CDS2965716 1257 - 0.385839
NA plu0268 hypothetical proteinchromosome CDS283299 2631 + 0.516914
NA plu0787 hypothetical proteinchromosome CDS906027 717 + 0.524407
NA plu1738 hypothetical proteinchromosome CDS2072176 1605 + 0.489097
NA plu0549 hypothetical proteinchromosome CDS618577 1692 - 0.473995
NA plu0507 hypothetical proteinchromosome CDS557154 582 - 0.398625
NA plu3382 hypothetical proteinchromosome CDS4008098 1344 - 0.392857
NA plu1742 hypothetical proteinchromosome CDS2077196 1098 + 0.479053
NA plu1733 Type 4 prepilin-like proteins leader peptide processing enzyme (Pectic enzyme secretion protein outO) [Includes: Leader peptidase (Prepilin peptidase)chromosome CDS2069076 795 + 0.506918
NA plu0245 hypothetical proteinchromosome CDS259864 1707 - 0.421207
NA plu0791 hypothetical proteinchromosome CDS909069 2643 + 0.540295
NA plu2057 hypothetical proteinchromosome CDS2430656 5088 + 0.454599
NA plu0790 hypothetical proteinchromosome CDS908129 858 + 0.536131
NA plu2156 hypothetical proteinchromosome CDS2539370 993 - 0.373615
NA plu1149 hypothetical proteinchromosome CDS1327789 8814 - 0.565804
NA plu3797 hypothetical proteinchromosome CDS4462680 1080 + 0.323148
NA plu0830 hypothetical proteinchromosome CDS961486 1299 + 0.535027
NA plu2119 hypothetical proteinchromosome CDS2503502 1014 - 0.382643
NA plu0267 hypothetical proteinchromosome CDS282321 795 + 0.469182
NA plu0539 hypothetical proteinchromosome CDS594793 1800 - 0.481667
NA plu1718 hypothetical proteinchromosome CDS2049818 1305 - 0.384674
NA plu1901 hypothetical proteinchromosome CDS2264814 402 + 0.507463
NA plu3065 hypothetical proteinchromosome CDS3571890 1680 - 0.441071
NA plu3577 hypothetical proteinchromosome CDS4215688 2787 - 0.517761
NA plu2963 hypothetical proteinchromosome CDS3469335 639 - 0.4241
NA plu0505 hypothetical proteinchromosome CDS553888 2475 - 0.407273
NA plu3631 hypothetical proteinchromosome CDS4280806 717 + 0.527197
NA plu3064 hypothetical proteinchromosome CDS3566742 5088 - 0.40055
NA plu0093 hypothetical proteinchromosome CDS87563 555 - 0.394595
NA plu1741 hypothetical proteinchromosome CDS2075627 1563 + 0.513116
NA plu3718 hypothetical proteinchromosome CDS4374057 9084 - 0.566821
NA plu3794 hypothetical proteinchromosome CDS4458146 1029 + 0.302235
NA plu0262 hypothetical proteinchromosome CDS278598 741 + 0.460189
NA plu3594 hypothetical proteinchromosome CDS4236073 6408 - 0.477372
NA plu0537 hypothetical proteinchromosome CDS591409 2823 - 0.557209
NA plu0416 hypothetical proteinchromosome CDS443812 2589 - 0.500579
NA plu0266 hypothetical proteinchromosome CDS281565 720 + 0.488889
NA plu2879 hypothetical proteinchromosome CDS3414237 846 - 0.429078
NA plu2158 hypothetical proteinchromosome CDS2542960 675 - 0.373333
NA plu1150 hypothetical proteinchromosome CDS1336651 1665 - 0.563964
NA plu3324 hypothetical proteinchromosome CDS3942670 10596 - 0.456399
NA plu0417 hypothetical proteinchromosome CDS446415 603 - 0.474295
NA plu1374 hypothetical proteinchromosome CDS1653561 402 + 0.462687
NA plu2495 hypothetical proteinchromosome CDS2936906 645 - 0.44031
NA plu0225 hypothetical proteinchromosome CDS230329 5160 - 0.431977
NA plu3630 hypothetical proteinchromosome CDS4280090 387 + 0.423773
NA plu1186 hypothetical proteinchromosome CDS1368836 612 + 0.325163
NA plu2159 hypothetical proteinchromosome CDS2543749 531 - 0.393597
NA plu0780 hypothetical proteinchromosome CDS898142 720 + 0.547222
NA plu0418 hypothetical proteinchromosome CDS447141 567 - 0.492063
NA plu2453 hypothetical proteinchromosome CDS2880371 5064 + 0.400276
NA plu1181 hypothetical proteinchromosome CDS1364634 1038 + 0.454721
NA plu0415 hypothetical proteinchromosome CDS442724 759 - 0.479578
NA plu2646 hypothetical proteinchromosome CDS3099833 1479 - 0.469236
NA plu3458 hypothetical proteinchromosome CDS4065904 1173 + 0.388747
NA plu0783 hypothetical proteinchromosome CDS900232 783 + 0.583653
NA plu0782 hypothetical proteinchromosome CDS899467 735 + 0.572789
NA plu3008 hypothetical proteinchromosome CDS3508362 753 + 0.454183
NA plu0226 hypothetical proteinchromosome CDS235518 1680 - 0.495238
NA plu0789 hypothetical proteinchromosome CDS907349 750 + 0.548
NA plu4906 inner membrane protein translocase component YidCchromosome CDS5686149 1641 - 0.442413
NA plu3569 hypothetical proteinchromosome CDS4208442 1680 - 0.495833
NA plu0506 hypothetical proteinchromosome CDS556388 699 - 0.354793
NA plu0548 hypothetical proteinchromosome CDS604770 13749 - 0.504109
NA plu2157 hypothetical proteinchromosome CDS2540382 2541 - 0.37741
NA plu0792 hypothetical proteinchromosome CDS911804 1155 + 0.545455
NA plu0784 hypothetical proteinchromosome CDS901098 2643 + 0.579644
NA plu1696 hypothetical proteinchromosome CDS2024611 951 - 0.360673
NA plu3822 hypothetical proteinchromosome CDS4490122 456 + 0.510965
clpP plu3869 ATP-dependent Clp protease proteolytic subunitchromosome CDS4545372 624 - 0.43109
cpxP plu4793 periplasmic protein precursorchromosome CDS5566624 495 - 0.438384
exbB plu3941 Biopolymer transport protein ExbBchromosome CDS4625742 1035 - 0.48599
exbD plu3940 Biopolymer transport protein ExbDchromosome CDS4625313 426 - 0.438967
ffh plu1256 Signal recognition particle protein (P48)chromosome CDS1454569 1362 + 0.456681
flgM plu1913 Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgMchromosome CDS2280636 303 - 0.448845
flgN plu1912 Flagella synthesis protein FlgNchromosome CDS2280184 441 - 0.446712
flhA plu1896 flagellar biosynthesis proteinchromosome CDS2257556 2082 + 0.48463
flhB plu1895 flagellar biosynthesis proteinchromosome CDS2256412 1152 + 0.469618
fliE plu1949 flagellar hook-basal body 11K protein FliEchromosome CDS2315342 312 + 0.439103
fliF plu1948 flagellar M-ring proteinchromosome CDS2313353 1704 - 0.491784
fliH plu1946 flagellar assembly proteinchromosome CDS2311667 705 - 0.50922
fliI plu1945 flagellum-specific ATP synthasechromosome CDS2310303 1365 - 0.531868
fliJ plu1944 flagellar proteinchromosome CDS2309817 444 - 0.45045
fliN plu1940 flagellar motor switch proteinchromosome CDS2306417 420 - 0.47381
fliP plu1938 flagellar biosynthesis proteinchromosome CDS2305197 735 - 0.469388
fliQ plu1937 flagellar biosynthesis proteinchromosome CDS2304907 270 - 0.47037
fliR plu1936 flagellar biosynthesis proteinchromosome CDS2304122 783 - 0.443167
fliS plu1952 flagellar protein FliSchromosome CDS2317842 411 - 0.437956
ftsY plu4104 cell division proteinchromosome CDS4792359 1275 - 0.465098
hofB plu3639 Protein transport protein HofBchromosome CDS4286662 1443 + 0.362439
hofC plu3640 Protein transport protein HofCchromosome CDS4288107 1200 + 0.349167
lepB plu3341 Signal peptidase I (SPase I) (Leader peptidase I)chromosome CDS3968282 981 - 0.438328
lspA plu0592 signal peptidase IIchromosome CDS674775 504 + 0.428571
mrfA plu0769 MrfA proteinchromosome CDS888552 540 + 0.481481
mrfB plu0770 MrfB proteinchromosome CDS889175 549 + 0.495446
mrfC plu0771 Outer membrane usher protein MrfCchromosome CDS889743 2556 + 0.491784
mrfD plu0772 MrfD proteinchromosome CDS892422 750 + 0.498667
mrfG plu0776 MrfG proteinchromosome CDS894875 546 + 0.43956
phfA plu0994 hypothetical proteinchromosome CDS1177360 981 - 0.317023
phfB plu0993 hypothetical proteinchromosome CDS1175942 1011 - 0.351137
phfC plu0996 hypothetical proteinchromosome CDS1180887 669 - 0.384155
phfD plu0995 hypothetical proteinchromosome CDS1178368 2514 - 0.389021
phfS plu0997 hypothetical proteinchromosome CDS1181612 510 - 0.364706
phlA plu0316 Hemolysin PhlAchromosome CDS334184 4443 - 0.437767
phlB plu0317 PhlA hemolysin secretion/activation protein PhlBchromosome CDS338692 1668 - 0.444844
pilN plu1051 hypothetical proteinchromosome CDS1229437 1704 + 0.502347
pilQ plu1054 hypothetical proteinchromosome CDS1232966 1554 + 0.51287
pilR plu1055 hypothetical proteinchromosome CDS1234512 1086 + 0.494475
pilU plu1057 hypothetical proteinchromosome CDS1236269 666 + 0.489489
ppdA plu0626 Prepilin peptidase dependent protein A precursorchromosome CDS711641 516 + 0.350775
ppdB plu0627 Prepilin peptidase dependent protein B precursorchromosome CDS712324 588 + 0.358844
ppdC plu0629 Prepilin peptidase dependent protein C precursorchromosome CDS713393 378 + 0.388889
ppdD plu3638 Prepilin peptidase dependent protein D precursorchromosome CDS4286072 423 + 0.323877
prtD plu0659 Outer membrane protein PrtDchromosome CDS757911 1377 + 0.458969
sctC plu3778 Type III secretion component protein SctCchromosome CDS4444107 1845 + 0.479133
sctJ plu3785 Type III secretion component protein SctJchromosome CDS4449008 738 + 0.49729
sctL plu3787 type III secretion proteinchromosome CDS4450350 618 + 0.466019
sctN plu3767 type III secretion system ATPasechromosome CDS4434397 1323 + 0.507937
sctQ plu3770 type III secretion proteinchromosome CDS4437319 933 + 0.493033
sctR plu3771 Type III secretion component protein SctRchromosome CDS4438248 654 + 0.443425
sctS plu3772 Type III secretion component protein SctSchromosome CDS4438904 267 + 0.438202
sctT plu3773 Type III secretion component protein SctTchromosome CDS4439167 789 + 0.48289
sctU plu3774 Type III secretion component protein SctUchromosome CDS4439952 1056 + 0.456439
sctV plu3761 Type III secretion protein SctVchromosome CDS4429651 2118 - 0.481114
secA plu3645 translocasechromosome CDS4291546 2712 - 0.45059
secB plu4839 export protein SecBchromosome CDS5612392 477 - 0.48218
secD plu3902 protein export protein SecDchromosome CDS4573541 1848 - 0.471861
secE plu0433 translocasechromosome CDS460617 384 + 0.486979
secF plu3901 protein export protein SecFchromosome CDS4572562 969 - 0.457172
secG plu4532 protein-export membrane proteinchromosome CDS5294034 339 - 0.474926
secY plu4706 preprotein translocase SecYchromosome CDS5488023 1332 - 0.45045
smf plu4694 Smf proteinchromosome CDS5478193 1086 - 0.409761
sohB plu2439 Possible protease sohBchromosome CDS2862686 1047 - 0.450812
sppA plu2553 protease IV (endopeptidase IV) (signal peptide peptidase)chromosome CDS2996740 1866 + 0.460343
tatA plu4410 Sec-independent protein translocase proteinchromosome CDS5158550 261 - 0.402299
tatB plu4409 Sec-independent protein translocase proteinchromosome CDS5158103 444 - 0.470721
tatC plu4408 Sec-independent protein translocase proteinchromosome CDS5157299 783 - 0.425287
tolB plu1455 translocation protein TolB precursorchromosome CDS1747179 1293 + 0.484919
tolC plu3954 outer membrane channel precursor proteinchromosome CDS4641003 1374 + 0.435953
tolQ plu1452 TolQ proteinchromosome CDS1744714 696 + 0.439655
tolR plu1453 TolR proteinchromosome CDS1745424 426 + 0.448357
yajC plu3903 preprotein translocase subunit YajCchromosome CDS4575416 330 - 0.439394
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SCV51 hypothetical proteinpSCV50 CDS47916 969 + 0.539732
nikB SC099 NikB-like proteinpSC138 CDS78040 2700 - 0.522963
pefC SCV25 outer membrane usher protein PefC precursorpSCV50 CDS19732 2409 + 0.600664
pefD SCV26 chaperone protein FanE precursorpSCV50 CDS22142 684 + 0.580409
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC2693 putative outer membrane efflux proteinchromosome CDS2856293 1410 + 0.568794
NA SC0364 TPA: injection proteinchromosome CDS405723 1914 + 0.512539
NA SC3843 possible exported proteinchromosome CDS4085554 231 - 0.47619
NA SC0341 hypothetical proteinchromosome CDS385342 1881 + 0.509835
NA SC2506 hypothetical proteinchromosome CDS2640508 2379 - 0.499369
NA SC4136 putative inner membrane or exportedchromosome CDS4412474 633 + 0.338073
NA SC4138 putative ABC exporter outer membrane component homologchromosome CDS4414481 1320 + 0.366667
bcfA SC0020 fimbrial subunitchromosome CDS24470 543 + 0.521179
bcfB SC0021 fimbrial chaparonechromosome CDS24972 828 + 0.509662
bcfD SC0022 fimbrial subunitchromosome CDS28426 1008 + 0.501984
bcfE SC0023 fimbrial subunitchromosome CDS29434 546 + 0.492674
bcfF SC0024 fimbrial subunitchromosome CDS29995 519 + 0.558767
bcfG SC0025 fimbrial chaparonechromosome CDS30479 732 + 0.54235
ccmD SC2256 heme exporter protein C, cytochrome c-type biogenesis proteinchromosome CDS2365675 213 - 0.694836
clpP SC0490 ATP-dependent Clp protease proteolytic subunitchromosome CDS547451 741 + 0.496626
cpxP SC3951 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresseschromosome CDS4203638 501 + 0.50499
dspP SC3615 putative inner membrane proteinchromosome CDS3823775 4341 + 0.528219
exbB SC3101 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3279443 732 - 0.547814
exbD SC3100 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3279034 426 - 0.507042
ffh SC2678 45S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNAchromosome CDS2834378 1362 - 0.550661
fimA SC0582 major type 1 subunit fimbrin (pilin)chromosome CDS648395 624 + 0.533654
fimD SC0585 outer membrane usher proteinchromosome CDS651732 2619 + 0.556319
fimF SC0587 putative fimbrial proteinchromosome CDS655382 519 + 0.552987
fimF SC4440 putative fimbrial chaparone proteinchromosome CDS4751117 546 - 0.501832
fimH SC0586 minor fimbrial subunitchromosome CDS654365 1008 + 0.516865
fimI SC0583 fimbrial protein internal segmentchromosome CDS649094 534 + 0.543071
flgM SC1119 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1237100 294 - 0.517007
flgN SC1118 flagellar biosynthesis: belived to be export chaperone for FlgK and FlgLchromosome CDS1236673 423 - 0.539007
flhA SC1920 flagellar biosynthesis proteinchromosome CDS2030792 2079 - 0.562771
flhB SC1921 flagellar biosynthesis proteinchromosome CDS2032863 1152 - 0.560764
fliE SC1972 flagellar basal body proteinchromosome CDS2077769 315 - 0.546032
fliF SC1974 flagellar M-ring proteinchromosome CDS2078300 1683 + 0.571004
fliH SC1976 flagellar assembly proteinchromosome CDS2080963 708 + 0.607345
fliI SC1977 flagellum-specific ATP synthasechromosome CDS2081670 1371 + 0.596645
fliJ SC1978 flagellar proteinchromosome CDS2083062 444 + 0.513514
fliN SC1982 flagellar motor switch proteinchromosome CDS2086297 414 + 0.543478
fliP SC1984 flagellar biosynthesis proteinchromosome CDS2087087 738 + 0.536585
fliQ SC1985 flagellar biosynthesis proteinchromosome CDS2087834 270 + 0.518519
fliR SC1986 flagellar biosynthesis proteinchromosome CDS2088112 795 + 0.515723
fliS SC1965 flagellar protein FliSchromosome CDS2072592 408 + 0.495098
ftsY SC3500 GTPase domain of cell division membrane proteinchromosome CDS3692860 1476 - 0.552846
hofB SC0142 putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptakechromosome CDS162377 1386 - 0.553391
hofC SC0141 putative component in type IV pilin biogenesischromosome CDS161185 1203 - 0.540316
hofQ SC3420 putative transport protein, possibly in biosynthesis of type IV pilinchromosome CDS3596703 1239 - 0.569814
hopD SC3376 leader peptidase HopDchromosome CDS3551227 594 + 0.521886
invA SC2828 invasion proteinchromosome CDS2991928 2058 - 0.455782
invC SC2826 type III secretion system ATPasechromosome CDS2990205 1296 - 0.544753
invG SC2830 invasion protein; outer membranechromosome CDS2995125 1689 - 0.462404
lepB SC2577 leader peptidase (signal peptidase I), serine proteasechromosome CDS2746242 975 - 0.531282
lpfA SC3571 long polar fimbriachromosome CDS3778230 537 - 0.463687
lpfB SC3570 long polar fimbrial chaperonechromosome CDS3777447 699 - 0.449213
lpfE SC3568 long polar fimbrial minor proteinchromosome CDS3773266 528 - 0.511364
lspA SC0041 signal peptidase IIchromosome CDS50943 501 + 0.528942
mac SC4137 putative methyl-accepting chemotaxis proteinchromosome CDS4413103 1389 + 0.366451
marC SC1539 putative MarC Transporter, multiple antibiotic resistance proteinchromosome CDS1636338 666 + 0.534535
misL SC3678 putative autotransported proteinchromosome CDS3893274 2868 + 0.529637
oprM SC0393 outer membrane efflux protein-like proteinchromosome CDS436959 1458 - 0.595336
orgB SC2801 putative flagellar biosynthesis/type III secretory pathway proteinchromosome CDS2967315 681 - 0.449339
ppdB SC2937 prepilin peptidase dependent protein B, putative component in type IV pilin biogenesischromosome CDS3116501 564 - 0.533688
ppdD SC0143 putative major component of type IV pilin, prelipin peptidase dependent proteinchromosome CDS163772 438 - 0.541096
prgK SC2803 cell invasion protein; lipoprotein, may link inner and outer membraneschromosome CDS2968523 759 - 0.455863
safB SC0293 putative fimbriae assembly chaparonechromosome CDS337447 738 + 0.47832
safC SC0294 putative fimbriae usherchromosome CDS338208 2511 + 0.543608
secA SC0133 translocasechromosome CDS153022 2706 + 0.538803
secB SC3624 export protein SecBchromosome CDS3838539 468 - 0.508547
secD SC0449 protein export protein SecDchromosome CDS506823 1848 + 0.546537
secE SC4031 translocasechromosome CDS4296034 384 + 0.554688
secF SC0450 protein export protein SecFchromosome CDS508681 972 + 0.54321
secG SC3232 protein-export membrane proteinchromosome CDS3416591 528 - 0.496212
secY SC3354 preprotein translocase SecYchromosome CDS3540470 1332 - 0.495495
sipC SC2816 cell invasion proteinchromosome CDS2981385 1230 - 0.474797
smf SC3341 putative protein involved in DNA uptakechromosome CDS3530122 1125 - 0.539556
sohB SC1713 putative peptidasechromosome CDS1826217 1047 - 0.543458
spaO SC2823 type III secretion proteinchromosome CDS2987863 912 - 0.529605
spaP SC2822 surface presentation of antigens; secretory proteinschromosome CDS2987199 675 - 0.419259
spaQ SC2821 surface presentation of antigens; secretory proteinschromosome CDS2986913 261 - 0.467433
spaR SC2820 surface presentation of antigens; secretory proteinschromosome CDS2986118 792 - 0.5
spaS SC2819 type III secretion proteinchromosome CDS2985061 1071 - 0.434174
sppA SC1317 protease IV, a signal peptide peptidasechromosome CDS1413896 1857 - 0.559505
spy SC1329 periplasmic protein related to spheroblast formationchromosome CDS1427220 486 + 0.5
ssaC SC1415 Secretion system apparatus SsaCchromosome CDS1518145 1494 + 0.421687
ssaJ SC1430 Secretion system apparatus SsaJchromosome CDS1527965 750 + 0.418667
ssaN SC1436 type III secretion system ATPasechromosome CDS1533379 1302 + 0.510753
ssaQ SC1439 type III secretion proteinchromosome CDS1535396 969 + 0.457172
ssaR SC1440 Secretion system apparatus SsaRchromosome CDS1536432 648 + 0.430556
ssaS SC1441 Secretion system apparatus SsaSchromosome CDS1537076 267 + 0.426966
ssaT SC1442 Secretion system apparatus SsaTchromosome CDS1537343 780 + 0.389744
ssaU SC1443 Secretion system apparatus SsaUchromosome CDS1538119 1059 + 0.396601
ssaV SC1435 Secretion system apparatus SsaVchromosome CDS1531344 2046 + 0.466276
stbA SC0383 putative fimbriae; major subunitchromosome CDS428942 537 - 0.47486
stbB SC0382 putative fimbriae; chaparonechromosome CDS428119 762 - 0.454068
stbC SC0381 putative fimbriae; usherchromosome CDS425574 2562 - 0.540593
stcB SC2166 putative periplasmic chaperone proteinchromosome CDS2268875 753 - 0.403718
stcC SC2165 paral putative outer membrane proteinchromosome CDS2266372 2490 - 0.457831
stdA SC2969 putative fimbrial-like proteinchromosome CDS3149971 711 - 0.488045
stdB SC2968 putative outer membrane usher proteinchromosome CDS3147362 2490 - 0.608032
stdC SC2967 putative fimbrial chaparone proteinchromosome CDS3146578 744 - 0.584677
steB SC2890 outer membrane usher proteinchromosome CDS3056123 2700 + 0.553704
stf SC1236 side tail fiber proteinchromosome CDS1346171 2679 + 0.549459
stfA SC0195 putative fimbrial subunitchromosome CDS226764 561 + 0.515152
stfC SC0196 putative fimbrial outer membrane usherchromosome CDS227410 2658 + 0.55079
stfD SC2891 putative periplasmic fimbrial chaperonechromosome CDS3058835 774 + 0.549096
stfD SC0197 putative periplasmic fimbrial chaperonechromosome CDS230085 753 + 0.543161
stfE SC0198 putaive minor fimbrial subunitchromosome CDS230856 513 + 0.559454
sthA SC4439 putative fimbrial chaparone proteinchromosome CDS4750363 684 - 0.457602
sthB SC4438 putative fimbrial usher proteinchromosome CDS4747780 2538 - 0.469661
sthD SC4437 putative fimbrial subunitchromosome CDS4747205 558 - 0.501792
sthE SC4436 putative major fimbrial subunitchromosome CDS4746079 1086 - 0.519337
stiA SC0177 putative fimbrial subunitchromosome CDS204490 540 - 0.524074
stiB SC0176 putative fimbrial chaparonechromosome CDS203759 684 - 0.533626
stiC SC0175 putativie fimbrial usherchromosome CDS201189 2544 - 0.553852
tatA SC3871 twin argininte translocase protein Achromosome CDS4114736 255 + 0.458824
tatB SC3872 sec-independent translocasechromosome CDS4114994 549 + 0.540984
tatC SC3873 part of sec-independent protein export, integral membrane proteinchromosome CDS4115545 780 + 0.505128
tatE SC0661 twin argininte translocase protein Achromosome CDS737120 204 + 0.495098
tctB SC2719 tricarboxylic transportchromosome CDS2890262 435 + 0.574713
tolB SC0752 translocation protein TolB precursorchromosome CDS844978 1293 + 0.556071
tolC SC3130 outer membrane channel precursor proteinchromosome CDS3309329 1476 + 0.523713
tolQ SC0749 tol protein, membrane-spanning inner membrane proteins, required for outer membrane integrity, uptake of group A colicins, and translocation of phagechromosome CDS842505 693 + 0.525253
tolR SC0750 tol protein, role in outer membrane integrity, uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasmchromosome CDS843201 429 + 0.508159
vg05 SC1218 Gifsy-1 prophage head-tail preconnector gp5chromosome CDS1329539 1497 + 0.566466
virG SC0308 similar to Shigella VirG proteinchromosome CDS354962 408 - 0.470588
yaiU SC0414 flagellar proteinchromosome CDS469709 2886 + 0.452876
yajC SC0448 preprotein translocase subunit YajCchromosome CDS506463 333 + 0.51952
ybbJ SC0541 putative Membrane protein implicated in regulation of membrane protease activitychromosome CDS605330 453 - 0.600442
ychE SC1743 putative integral membrane proteins of the MarC familychromosome CDS1855130 648 - 0.507716
yfcP SC2894 fimbrial subunitchromosome CDS3060616 537 + 0.52514
yggR SC3039 putative protein transportchromosome CDS3219437 981 - 0.571865
yidC SC3759 inner membrane protein translocase component YidCchromosome CDS3985417 1647 + 0.540376
yohG SC2188 putative Outer membrane efflux proteinchromosome CDS2291343 1437 - 0.576896
yrfC SC3423 putative inner membrane proteinchromosome CDS3598704 540 - 0.588889
 
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPA4074 putative integral membrane proteinchromosome CDS4233406 1389 + 0.37077
NA SPA2549 putative type I secretion proteinchromosome CDS2656921 1410 + 0.569504
NA SPA4075 putative type-I secretion proteinchromosome CDS4234784 1320 + 0.366667
NA SPA2448 probable secreted proteinchromosome CDS2545075 408 + 0.470588
bcfA SPA0021 fimbrial subunitchromosome CDS24462 543 + 0.521179
bcfB SPA0022 fimbrial chaperonechromosome CDS25105 687 + 0.510917
bcfC SPA0023 fimbrial usherchromosome CDS25796 2622 + 0.541571
bcfD SPA0024 fimbrial subunitchromosome CDS28418 1008 + 0.503968
bcfE SPA0025 fimbrial subunitchromosome CDS29426 546 + 0.47619
bcfG SPA0027 fimbrial chaperonechromosome CDS30498 705 + 0.541844
ccmD SPA3666 heme exporter protein D1chromosome CDS3804382 213 - 0.694836
ccmD SPA0613 heme exporter protein D1chromosome CDS693665 213 + 0.694836
clpP SPA2274 ATP-dependent Clp protease proteolytic subunitchromosome CDS2369275 624 - 0.512821
cpxP SPA3903 extracytoplasmic stress protein for protein-mediated toxicitieschromosome CDS4048631 501 + 0.506986
exbB SPA3027 biopolymer transport ExbB proteinchromosome CDS3128769 735 - 0.55102
exbD SPA3026 biopolymer transport ExbD proteinchromosome CDS3128337 426 - 0.504695
ffh SPA2536 signal recognition particle proteinchromosome CDS2634985 1362 - 0.553598
fimA SPA2182 type-1 fimbrial protein, a chain precursorchromosome CDS2269893 558 - 0.544803
fimC SPA2180 fimbrial chaperone proteinchromosome CDS2268549 693 - 0.503608
fimD SPA2179 outer membrane usher protein FimD precursorchromosome CDS2265906 2613 - 0.553387
fimF SPA2177 fimbria-like protein FimF precursorchromosome CDS2264356 519 - 0.55106
fimH SPA2178 FimH protein precursorchromosome CDS2264884 1008 - 0.519841
fimI SPA2181 hypothetical proteinchromosome CDS2269285 534 - 0.546816
flgM SPA1679 negative regulator of flagellin synthesis (anti-sigma factor)chromosome CDS1741536 294 + 0.517007
flgN SPA1680 flagella synthesis protein FlgNchromosome CDS1741834 423 + 0.541371
flhA SPA0955 flagellar biosynthesis proteinchromosome CDS1026785 2079 + 0.563252
flhB SPA0954 flagellar biosynthesis proteinchromosome CDS1025641 1152 + 0.557292
fliE SPA0902 flagellar basal body proteinchromosome CDS982632 315 + 0.568254
fliF SPA0901 flagellar M-ring proteinchromosome CDS980724 1692 - 0.571513
fliH SPA0899 flagellar assembly proteinchromosome CDS979036 708 - 0.608757
fliI SPA0898 flagellum-specific ATP synthasechromosome CDS977666 1371 - 0.600292
fliJ SPA0897 flagellar proteinchromosome CDS977201 444 - 0.513514
fliN SPA0893 flagellar motor switch proteinchromosome CDS973990 414 - 0.543478
fliP SPA0891 flagellar biosynthesis proteinchromosome CDS972876 738 - 0.53794
fliQ SPA0890 flagellar biosynthesis proteinchromosome CDS972597 270 - 0.518519
fliR SPA0889 flagellar biosynthesis proteinchromosome CDS971794 795 - 0.513208
fliS SPA0909 flagellar protein FliSchromosome CDS987705 408 - 0.5
ftsY SPA3422 cell division proteinchromosome CDS3529575 1476 - 0.552168
hofB SPA0147 protein transport protein HofBchromosome CDS169549 1386 - 0.55267
hofC SPA0146 protein transport protein HofCchromosome CDS168357 1203 - 0.54281
hofQ SPA3353 type II secretion system proteinchromosome CDS3448924 1239 - 0.566586
hopD SPA3308 Type III leader peptidasechromosome CDS3403297 468 + 0.525641
invA SPA2754 possible secretory protein (associated with virulence)chromosome CDS2852936 2058 - 0.456268
invG SPA2756 secretory protein (associated with virulence)chromosome CDS2856133 1689 - 0.462996
lepB SPA0283 signal peptidase Ichromosome CDS319912 975 + 0.526154
lspA SPA0048 signal peptidase IIchromosome CDS56655 501 + 0.516966
marC SPA1334 hypothetical proteinchromosome CDS1418052 666 - 0.53003
misL SPA3608 putative autotransported proteinchromosome CDS3742825 2853 + 0.528566
orgB SPA2727 oxygen-regulated invasion proteinchromosome CDS2828343 672 - 0.446429
pilT SPA2962 Type II secretion, ATP-binding, proteinchromosome CDS3069305 981 - 0.579001
ppdB SPA2864 prepilin peptidase dependent protein B precursorchromosome CDS2974440 564 - 0.542553
ppdD SPA0148 prepilin peptidase dependent protein D precursorchromosome CDS170944 438 - 0.541096
prgK SPA2729 pathogenicity 1 island effector proteinchromosome CDS2829542 759 - 0.458498
prlA SPA3286 preprotein translocase SecYchromosome CDS3392414 1332 - 0.494745
safB SPA2463 periplasmic fimbrial chaperone proteinchromosome CDS2562231 741 - 0.476383
safC SPA2462 outer-membrane fimbrial usher proteinchromosome CDS2559697 2511 - 0.544006
secA SPA0138 translocasechromosome CDS160194 2706 + 0.535107
secB SPA3553 export protein SecBchromosome CDS3683982 468 - 0.504274
secD SPA2316 protein export protein SecDchromosome CDS2408869 1815 - 0.547107
secE SPA3985 translocasechromosome CDS4135646 384 + 0.554688
secF SPA2315 protein export protein SecFchromosome CDS2407887 915 - 0.553005
secG SPA3160 protein-export membrane proteinchromosome CDS3269319 333 - 0.510511
sefB SPA4305 fimbrial chaperone proteinchromosome CDS4473323 753 + 0.288181
sefC SPA4306 outer membrane fimbrial usher proteinchromosome CDS4474080 2445 + 0.353783
sipC SPA2742 pathogenicity island 1 effector proteinchromosome CDS2842393 1230 - 0.474797
smf SPA3272 hypothetical proteinchromosome CDS3382067 1125 - 0.537778
sohB SPA1160 putative proteasechromosome CDS1228210 1047 + 0.536772
spaI SPA2752 type III secretion system ATPasechromosome CDS2851213 1296 - 0.543981
spaO SPA2749 type III secretion proteinchromosome CDS2848871 912 - 0.526316
spaP SPA2748 secretory protein (associated with virulence)chromosome CDS2848207 675 - 0.416296
spaQ SPA2747 secretory protein (associated with virulence)chromosome CDS2847921 261 - 0.467433
spaR SPA2746 secretory protein (associated with virulence)chromosome CDS2847126 792 - 0.494949
spaS SPA2745 type III secretion proteinchromosome CDS2846069 1071 - 0.430439
spiA SPA1459 putative outer membrane secretory proteinchromosome CDS1530402 1494 - 0.423025
sppA SPA1549 protease IVchromosome CDS1624074 1857 + 0.557351
spy SPA1536 hypothetical proteinchromosome CDS1609798 486 - 0.5
ssaJ SPA1444 putative pathogenicity island lipoproteinchromosome CDS1521272 750 - 0.422667
ssaN SPA1438 type III secretion system ATPasechromosome CDS1515306 1302 - 0.512289
ssaQ SPA1435 type III secretion proteinchromosome CDS1513622 969 - 0.459236
ssaS SPA1433 putative type III secretion proteinchromosome CDS1512644 267 - 0.423221
ssaT SPA1432 putative type III secretion proteinchromosome CDS1511864 780 - 0.394872
ssaU SPA1431 putative type III secretion proteinchromosome CDS1510809 1059 - 0.396601
ssaV SPA1439 Secretion system apparatus: homology with the LcrD family of proteinschromosome CDS1516597 2046 - 0.465298
stbA SPA2379 probable fimbrial proteinchromosome CDS2479819 537 + 0.476723
stbB SPA2380 fimbrial chaperone proteinchromosome CDS2480417 762 + 0.450131
stbC SPA2381 outer membrane fimbrial usher proteinchromosome CDS2481162 2562 + 0.539422
stbE SPA2383 fimbrial chaperone proteinchromosome CDS2485019 759 + 0.472991
stcA SPA0700 putative fimbrial subunit proteinchromosome CDS783645 534 + 0.395131
stcB SPA0701 putative fimbrial chaperone proteinchromosome CDS784240 681 + 0.396476
stcC SPA0702 putative outer membrane usher proteinchromosome CDS784949 2487 + 0.468034
stdA SPA2897 probable fimbrial proteinchromosome CDS3008709 585 - 0.526496
stdB SPA2896 probable outer membrane fimbrial usher proteinchromosome CDS3006100 2490 - 0.609237
stdC SPA2895 probable fimbrial chaperone proteinchromosome CDS3005316 744 - 0.587366
steB SPA2813 outer membrane usher proteinchromosome CDS2913144 2646 + 0.558201
steC SPA2814 periplasmic fimbrial chaperonechromosome CDS2915802 774 + 0.54522
steF SPA2817 fimbrial subunitchromosome CDS2917583 537 + 0.480447
stfA SPA0201 putative fimbrial subunitchromosome CDS234923 561 + 0.518717
stfD SPA0203 putative periplasmic fimbrial chaperonechromosome CDS238244 753 + 0.535193
stfE SPA0204 putaive minor fimbrial subunitchromosome CDS239015 513 + 0.551657
sthA SPA4405 putative fimbrial proteinchromosome CDS4580651 546 - 0.501832
sthB SPA4404 putative fimbrial chaperone proteinchromosome CDS4579897 684 - 0.459064
sthC SPA4403 putative fimbrial usher proteinchromosome CDS4577314 2538 - 0.471237
sthD SPA4402 putative fimbrial subunitchromosome CDS4576739 558 - 0.5
sthE SPA4401 putative major fimbrial subunitchromosome CDS4575613 1086 - 0.518416
stkA SPA0185 major fimbrial subunitchromosome CDS214375 606 - 0.463696
stkB SPA0184 putative fimbriae; chaparonechromosome CDS213536 753 - 0.463479
stkC SPA0183 outer membrane usher proteinchromosome CDS210871 2598 - 0.515396
stkG SPA0179 putative fimbrial proteinchromosome CDS207989 1062 - 0.503766
tatA SPA3814 twin argininte translocase protein Achromosome CDS3958723 255 + 0.454902
tatB SPA3815 sec-independent translocasechromosome CDS3958981 549 + 0.544627
tatC SPA3816 sec-independent protein translocase proteinchromosome CDS3959532 780 + 0.505128
tatE SPA2102 twin argininte translocase protein Achromosome CDS2187674 204 - 0.490196
tcfC SPA2453 outermembrane fimbrial usher proteinchromosome CDS2549942 2688 - 0.53683
tolB SPA1995 translocation protein TolB precursorchromosome CDS2073264 1293 - 0.559938
tolC SPA3055 outer membrane channel precursor proteinchromosome CDS3159147 1476 + 0.521003
tolQ SPA1998 TolQ proteinchromosome CDS2076346 693 - 0.525253
tolR SPA1997 tolR proteinchromosome CDS2075914 429 - 0.51049
yaiU SPA2350 putative flagellin structural proteinchromosome CDS2444939 2946 - 0.462661
yajC SPA2317 preprotein translocase subunit YajCchromosome CDS2410744 333 - 0.51952
ybbJ SPA2222 hypothetical proteinchromosome CDS2311640 453 + 0.598234
ychE SPA1130 hypothetical proteinchromosome CDS1199680 648 + 0.50463
yidC SPA3686 inner membrane protein translocase component YidCchromosome CDS3828376 1647 + 0.541591
yohG SPA0679 putative lipoproteinchromosome CDS760997 1437 + 0.5762
yrfC SPA3356 hypothetical proteinchromosome CDS3450925 540 - 0.587037
yscR SPA1434 putative type III secretion proteinchromosome CDS1512907 648 - 0.429012
 
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA t1896 putative bacteriophage proteinchromosome CDS1952716 261 - 0.421456
NA t2682 hypothetical proteinchromosome CDS2774334 432 + 0.578704
NA t1442 hypothetical proteinchromosome CDS1486447 666 + 0.531532
NA t2644 putative type I secretion proteinchromosome CDS2729658 1410 + 0.569504
NA t1659 hypothetical proteinchromosome CDS1717488 648 - 0.50463
NA t4163 putative integral membrane proteinchromosome CDS4308272 1389 + 0.365011
NA t4162 hypothetical proteinchromosome CDS4307643 633 + 0.341232
NA t4099 hypothetical proteinchromosome CDS4237346 1125 + 0.536
NA t2543 probable secreted proteinchromosome CDS2620356 408 + 0.465686
NA t2491 puative autotransporter/virulence factorchromosome CDS2561488 2886 - 0.452529
NA t2360 hypothetical proteinchromosome CDS2426452 453 + 0.602649
NA t4260 hypothetical proteinchromosome CDS4426771 2091 + 0.470588
NA t1629 putative proteasechromosome CDS1688560 1047 - 0.542502
NA t1187 hypothetical proteinchromosome CDS1256434 486 + 0.493827
NA t4164 putative type-I secretion proteinchromosome CDS4309650 1308 + 0.365443
bcfA t0022 fimbrial subunitchromosome CDS24473 543 + 0.521179
bcfB t0023 fimbrial chaperonechromosome CDS25116 687 + 0.512373
bcfD t0025 fimbrial subunitchromosome CDS28429 1008 + 0.503968
bcfE t0026 fimbrial subunitchromosome CDS29437 546 + 0.47619
bcfF t0027 fimbrial subunitchromosome CDS29998 519 + 0.558767
bcfG t0028 fimbrial chaperonechromosome CDS30509 705 + 0.541844
ccmD t3702 heme exporter protein D2chromosome CDS3817684 213 + 0.694836
ccmD t0613 heme exporter protein D1chromosome CDS696159 213 + 0.694836
clpP t2412 ATP-dependent Clp protease proteolytic subunitchromosome CDS2485120 624 - 0.511218
cpxP t3559 extracytoplasmic stress protein for protein-mediated toxicitieschromosome CDS3659998 501 - 0.506986
exbB t3079 biopolymer transport ExbB proteinchromosome CDS3161186 735 - 0.555102
exbD t3078 biopolymer transport ExbD proteinchromosome CDS3160754 426 - 0.502347
ffh t2632 signal recognition particle proteinchromosome CDS2708336 1362 - 0.549192
fimA t2320 Type-1 fimbrial protein, a chain precursorchromosome CDS2384470 555 - 0.54955
fimC t2318 fimbrial chaperone proteinchromosome CDS2383126 693 - 0.494949
fimD t2317 outer membrane usher protein FimD precursorchromosome CDS2380483 2613 - 0.558362
fimF t2315 fimbria-like protein FimF precursorchromosome CDS2378933 519 - 0.543353
fimI t2319 hypothetical proteinchromosome CDS2383862 534 - 0.544944
flgM t1748 negative regulator of flagellin synthesischromosome CDS1813569 294 + 0.510204
flgN t1749 flagella synthesis protein FlgNchromosome CDS1813867 423 + 0.541371
flhA t0964 flagellar biosynthesis proteinchromosome CDS1051231 2079 + 0.560847
flhB t0963 flagellar biosynthesis proteinchromosome CDS1050087 1152 + 0.559028
fliE t0909 flagellar basal body proteinchromosome CDS1006560 315 + 0.546032
fliF t0908 flagellar M-ring proteinchromosome CDS1004661 1683 - 0.568627
fliH t0906 flagellar assembly proteinchromosome CDS1002973 708 - 0.607345
fliI t0905 flagellum-specific ATP synthasechromosome CDS1001603 1371 - 0.598833
fliJ t0904 flagellar proteinchromosome CDS1001138 444 - 0.513514
fliN t0900 flagellar motor switch proteinchromosome CDS997921 414 - 0.545894
fliP t0898 flagellar biosynthesis proteinchromosome CDS996807 738 - 0.536585
fliQ t0897 flagellar biosynthesis proteinchromosome CDS996528 270 - 0.514815
fliR t0896 flagellar biosynthesis proteinchromosome CDS995725 795 - 0.509434
fliS t0916 flagellar protein FliSchromosome CDS1011706 408 - 0.497549
ftsY t3951 cell division proteinchromosome CDS4090423 1476 + 0.550813
hofB t0149 transport protein HofBchromosome CDS169457 1386 - 0.553391
hofC t0148 transport protein HofCchromosome CDS168265 1203 - 0.541978
hofQ t4018 type II secretion system proteinchromosome CDS4170791 1239 + 0.567393
hopD t4063 Type III leader peptidasechromosome CDS4216773 468 - 0.523504
invA t2798 possible virulence-associated secretory proteinchromosome CDS2876257 2058 - 0.455782
invG t2800 virulence-associated secretory proteinchromosome CDS2879454 1689 - 0.463588
lepB t0275 signal peptidase Ichromosome CDS314007 975 + 0.533333
lspA t0049 signal peptidase IIchromosome CDS56686 501 + 0.516966
orgA t2771 oxygen-regulated invasion proteinchromosome CDS2851668 672 - 0.449405
pilQ t4245 nucleotide-binding proteinchromosome CDS4413760 1716 + 0.545455
pilR t4246 hypothetical proteinchromosome CDS4415472 1086 + 0.563536
pilT t3011 Type II secretion, ATP-binding, proteinchromosome CDS3101125 981 - 0.574924
pilU t4249 prepilin peptidasechromosome CDS4417675 663 + 0.536953
pilV t4250 prepilinchromosome CDS4418334 1308 + 0.502294
ppdD t0150 prepilin peptidase dependent protein D precursorchromosome CDS170852 438 - 0.534247
prgK t2773 pathogenicity 1 island effector proteinchromosome CDS2852867 759 - 0.459816
prlA t4085 preprotein translocase SecYchromosome CDS4226792 1332 + 0.495495
safB t2559 periplasmic fimbrial chaperone proteinchromosome CDS2637504 741 - 0.479082
safC t2558 outer-membrane fimbrial usher proteinchromosome CDS2634970 2511 - 0.543608
sapB t3828 putative autotransporterchromosome CDS3949023 3351 - 0.523724
secA t0140 translocasechromosome CDS160098 2706 + 0.538064
secB t3818 export protein SecBchromosome CDS3938132 468 + 0.50641
secD t2456 protein export protein SecDchromosome CDS2524717 1848 - 0.547078
secE t3480 translocasechromosome CDS3574468 384 - 0.554688
secF t2455 protein export protein SecFchromosome CDS2523735 972 - 0.545267
secG t3210 protein-export membrane proteinchromosome CDS3301870 333 - 0.510511
sefB t4534 fimbrial chaperone proteinchromosome CDS4680464 753 + 0.288181
sefC t4536 outer membrane fimbrial usher proteinchromosome CDS4681221 2553 + 0.359185
sipC t2786 pathogenicity island 1 effector proteinchromosome CDS2865714 1230 - 0.474797
spaI t2796 type III secretion system ATPasechromosome CDS2874534 1296 - 0.54321
spaO t2793 type III secretion proteinchromosome CDS2872192 912 - 0.526316
spaP t2792 virulence-associated secretory proteinchromosome CDS2871528 675 - 0.414815
spaQ t2791 virulence-associated secretory proteinchromosome CDS2871242 261 - 0.467433
spaR t2790 virulence-associated secretory proteinchromosome CDS2870447 792 - 0.497475
spaS t2789 type III secretion proteinchromosome CDS2869390 1071 - 0.431373
spiA t1262 putative outer membrane secretory proteinchromosome CDS1334869 1494 + 0.423025
sppA t1174 protease IVchromosome CDS1240788 1857 - 0.558428
ssaJ t1277 putative pathogenicity island lipoproteinchromosome CDS1344683 750 + 0.425333
ssaN t1283 type III secretion system ATPasechromosome CDS1350097 1302 + 0.511521
ssaQ t1286 type III secretion proteinchromosome CDS1352114 969 + 0.45614
ssaS t1288 putative type III secretion proteinchromosome CDS1353794 267 + 0.41573
ssaT t1289 putative type III secretion proteinchromosome CDS1354061 780 + 0.39359
ssaU t1290 putative type III secretion proteinchromosome CDS1354837 1059 + 0.396601
ssaV t1282 putative type III secretion proteinchromosome CDS1348062 2046 + 0.460411
staB t0189 chaperone protein EcpD precursorchromosome CDS215905 735 - 0.468027
staC t0188 outer membrane usher protein HtrE precursorchromosome CDS213239 2592 - 0.513117
stbA t2521 probable fimbrial proteinchromosome CDS2596311 537 + 0.478585
stbB t2522 fimbrial chaperone proteinchromosome CDS2596909 762 + 0.448819
stbE t2525 fimbrial chaperone proteinchromosome CDS2601511 759 + 0.469038
stcB t0705 putative fimbrial chaperone proteinchromosome CDS791314 684 + 0.397661
stdA t2940 probable fimbrial proteinchromosome CDS3033973 582 - 0.524055
stdB t2939 probable outer membrane fimbrial usher proteinchromosome CDS3031364 2490 - 0.610442
stdC t2938 probable fimbrial chaperone proteinchromosome CDS3030580 744 - 0.583333
steB t2857 outer membrane usher proteinchromosome CDS2935533 2700 + 0.553333
steC t2858 periplasmic fimbrial chaperonechromosome CDS2938245 774 + 0.546512
steF t2861 fimbrial subunitchromosome CDS2940026 537 + 0.482309
stgA t3659 probable fimbrial subunit proteinchromosome CDS3766087 576 + 0.508681
stgB t3660 fimbrial chaperone proteinchromosome CDS3766760 699 + 0.410587
sthA t4634 putative fimbrial proteinchromosome CDS4787384 546 - 0.505495
sthB t4633 putative fimbrial chaperone proteinchromosome CDS4786630 684 - 0.459064
sthD t4631 putative fimbrial subunitchromosome CDS4783473 558 - 0.496416
tatA t3324 twin argininte translocase protein Achromosome CDS3424403 255 - 0.454902
tatB t3323 sec-independent translocasechromosome CDS3423851 549 - 0.544627
tatC t3322 sec-independent protein translocase proteinchromosome CDS3423069 780 - 0.508974
tatE t2235 twin argininte translocase protein Achromosome CDS2301533 204 - 0.485294
tolB t2128 translocation protein TolB precursorchromosome CDS2189139 1293 - 0.559938
tolC t3107 outer membrane channel precursor proteinchromosome CDS3191564 1476 + 0.522358
tolQ t2131 tolQ proteinchromosome CDS2192182 693 - 0.519481
tolR t2130 tolR proteinchromosome CDS2191750 429 - 0.51049
yajC t2457 preprotein translocase subunit YajCchromosome CDS2526592 333 - 0.51952
yidC t3678 inner membrane protein translocase component YidCchromosome CDS3787571 1647 - 0.540984
yohG t0683 putative lipoproteinchromosome CDS768089 1437 + 0.580376
yrfC t4016 hypothetical proteinchromosome CDS4169489 540 + 0.585185
yscR t1287 putative type III secretion proteinchromosome CDS1353150 648 + 0.424383
 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA HCM2.0113c hypothetical proteinpHCM2 CDS88047 927 - 0.508091
NA STY0405 puative autotransporter/virulence factorchromosome CDS416740 2886 + 0.452529
NA STY0352 probable secreted proteinchromosome CDS360350 408 - 0.465686
NA HCM1.276 putative peptidasepHCM1 CDS209530 1182 + 0.505922
NA STY4562 hypothetical proteinchromosome CDS4442121 2091 + 0.470588
NA STY4453 putative integral membrane proteinchromosome CDS4323622 1389 + 0.365011
NA STY4452 hypothetical proteinchromosome CDS4322993 633 + 0.341232
NA STY0546 hypothetical proteinchromosome CDS554197 453 - 0.602649
NA STY2876 putative type I secretion proteinchromosome CDS2754433 1410 + 0.569504
NA HCM2.0051c putative phage tail proteinpHCM2 CDS37667 2553 - 0.46181
NA STY1303 hypothetical proteinchromosome CDS1263048 648 + 0.50463
NA HCM1.262 hypothetical proteinpHCM1 CDS192297 3990 - 0.480952
NA HCM1.21c hypothetical proteinpHCM1 CDS6329 309 - 0.462783
NA STY4456 putative type-I secretion proteinchromosome CDS4325000 1308 + 0.365443
NA STY1334 putative proteasechromosome CDS1291577 1047 + 0.542502
NA STY4392 hypothetical proteinchromosome CDS4252698 1125 + 0.536
NA STY1045 putative bacteriophage proteinchromosome CDS1028101 261 + 0.421456
NA STY2907 hypothetical proteinchromosome CDS2788477 432 + 0.578704
NA STY2050 hypothetical proteinchromosome CDS1915387 555 - 0.481081
NA STY1539 hypothetical proteinchromosome CDS1493553 666 - 0.531532
NA STY1805 hypothetical proteinchromosome CDS1724211 486 - 0.493827
bcfA STY0024 fimbrial subunitchromosome CDS24473 543 + 0.521179
bcfB STY0025 fimbrial chaperonechromosome CDS25116 687 + 0.512373
bcfD STY0029 fimbrial subunitchromosome CDS28429 1008 + 0.502976
bcfE STY0030 fimbrial subunitchromosome CDS29437 546 + 0.47619
bcfF STY0031 fimbrial subunitchromosome CDS29998 519 + 0.558767
bcfG STY0032 fimbrial chaperonechromosome CDS30509 705 + 0.541844
ccmD1 STY2477 heme exporter protein D1chromosome CDS2308342 213 - 0.694836
ccmD2 STY3962 heme exporter protein D2chromosome CDS3832194 213 + 0.694836
clpP STY0490 ATP-dependent Clp protease proteolytic subunitchromosome CDS495358 624 + 0.511218
cpxP STY3811 extracytoplasmic stress protein for protein-mediated toxicitieschromosome CDS3674335 501 - 0.506986
exbB STY3332 biopolymer transport ExbB proteinchromosome CDS3175691 735 - 0.555102
exbD STY3331 biopolymer transport ExbD proteinchromosome CDS3175259 426 - 0.502347
ffh STY2864 signal recognition particle proteinchromosome CDS2733112 1362 - 0.549192
fimA STY0589 type-1 fimbrial protein, a chain precursorchromosome CDS596077 555 + 0.54955
fimC STY0592 fimbrial chaperone proteinchromosome CDS597283 693 + 0.494949
fimD STY0593 outer membrane usher protein FimD precursorchromosome CDS598006 2613 + 0.558362
fimF STY0595 fimbria-like protein FimF precursorchromosome CDS601650 519 + 0.543353
flgM STY1211 negative regulator of flagellin synthesis (anti-sigma factor)chromosome CDS1167321 294 - 0.510204
flgN STY1210 flagella synthesis protein FlgNchromosome CDS1166894 423 - 0.541371
flhA STY2122 flagellar biosynthesis proteinchromosome CDS1973172 2079 - 0.560847
flhB STY2123 flagellar biosynthesis proteinchromosome CDS1975243 1152 - 0.559028
fliE STY2176 flagellar basal body proteinchromosome CDS2019614 315 - 0.546032
fliF STY2177 flagellar M-ring proteinchromosome CDS2020145 1683 + 0.568033
fliH STY2179 flagellar assembly proteinchromosome CDS2022808 708 + 0.607345
fliI STY2180 flagellum-specific ATP synthasechromosome CDS2023515 1371 + 0.598833
fliJ STY2181 flagellar proteinchromosome CDS2024907 444 + 0.513514
fliN STY2185 flagellar motor switch proteinchromosome CDS2028154 414 + 0.545894
fliP STY2187 flagellar biosynthesis proteinchromosome CDS2028944 738 + 0.536585
fliQ STY2188 flagellar biosynthesis proteinchromosome CDS2029691 270 + 0.514815
fliR STY2189 flagellar biosynthesis proteinchromosome CDS2029969 795 + 0.509434
fliS STY2169 flagellar protein FliSchromosome CDS2014368 408 + 0.497549
ftsY STY4240 cell division proteinchromosome CDS4105776 1476 + 0.550813
hofB STY0165 protein transport protein HofBchromosome CDS169466 1386 - 0.553391
hofC STY0164 protein transport protein HofCchromosome CDS168274 1203 - 0.541978
hofQ STY4308 type II secretion system proteinchromosome CDS4186144 1239 + 0.567393
hopD STY4356 Type III leader peptidasechromosome CDS4232125 468 - 0.523504
invA STY3019 possible secretory protein (associated with virulence)chromosome CDS2890400 2058 - 0.455782
invG STY3021 secretory protein (associated with virulence)chromosome CDS2893597 1689 - 0.463588
lepB STY2828 signal peptidase Ichromosome CDS2689868 975 - 0.533333
lspA STY0056 signal peptidase IIchromosome CDS56686 501 + 0.516966
orgAb STY2990 cell invasion proteinchromosome CDS2865811 672 - 0.449405
pilQ STY4545 nucleotide-binding proteinchromosome CDS4429110 1716 + 0.545455
pilR STY4546 hypothetical proteinchromosome CDS4430822 1086 + 0.563536
pilT STY3252 Type II secretion, ATP-binding, proteinchromosome CDS3115630 981 - 0.574924
pilU STY4549 prepilin peptidasechromosome CDS4433025 663 + 0.536953
pilV STY4550 prepilinchromosome CDS4433684 1308 + 0.502294
ppdD STY0166 prepilin peptidase dependent protein D precursorchromosome CDS170861 438 - 0.534247
prgK STY2992 pathogenicity 1 island effector proteinchromosome CDS2867010 759 - 0.459816
prlA STY4378 preprotein translocase SecYchromosome CDS4242144 1332 + 0.495495
safB STY0335 periplasmic fimbrial chaperone proteinchromosome CDS342869 741 + 0.479082
safC STY0336 outer-membrane fimbrial usher proteinchromosome CDS343633 2511 + 0.543608
sapB STY4105 putative autotransporterchromosome CDS3963524 3324 - 0.525271
secA STY0156 translocasechromosome CDS160107 2706 + 0.537694
secB STY4094 export protein SecBchromosome CDS3952633 468 + 0.50641
secD STY0445 protein export protein SecDchromosome CDS454536 1848 + 0.547078
secE STY3738 translocasechromosome CDS3588809 384 - 0.554688
secF STY0446 protein export protein SecFchromosome CDS456394 972 + 0.545267
secG STY3471 protein-export membrane proteinchromosome CDS3316375 333 - 0.510511
sefB STY4837 fimbrial chaperone proteinchromosome CDS4697576 753 + 0.288181
sefC STY4838 outer membrane fimbrial usher proteinchromosome CDS4698333 2517 + 0.357171
sipC STY3007 pathogenicity island 1 effector proteinchromosome CDS2879857 1230 - 0.474797
spaI STY3017 type III secretion system ATPasechromosome CDS2888677 1296 - 0.54321
spaO STY3014 type III secretion proteinchromosome CDS2886335 912 - 0.526316
spaP STY3013 secretory protein (associated with virulence)chromosome CDS2885671 675 - 0.414815
spaQ STY3012 secretory protein (associated with virulence)chromosome CDS2885385 261 - 0.467433
spaR STY3011 secretory protein (associated with virulence)chromosome CDS2884590 792 - 0.497475
spaS STY3010 type III secretion proteinchromosome CDS2883533 1071 - 0.431373
spiA STY1726 putative outer membrane secretory proteinchromosome CDS1644774 1494 - 0.423025
sppA STY1819 protease IVchromosome CDS1738487 1857 + 0.558428
ssaJ STY1711 putative pathogenicity island lipoproteinchromosome CDS1635704 750 - 0.425333
ssaN STY1705 type III secretion system ATPasechromosome CDS1629738 1302 - 0.511521
ssaQ STY1702 type III secretion proteinchromosome CDS1628054 969 - 0.455108
ssaS STY1700 putative type III secretion proteinchromosome CDS1627076 267 - 0.41573
ssaT STY1699 putative type III secretion proteinchromosome CDS1626296 780 - 0.39359
ssaU STY1698 putative type III secretion proteinchromosome CDS1625241 1059 - 0.396601
ssaV STY1706 putative type III secretion proteinchromosome CDS1631029 2046 - 0.460411
staB STY0206 chaperone protein EcpD precursorchromosome CDS215914 735 - 0.468027
staC STY0205 outer membrane usher protein HtrE precursorchromosome CDS213248 2592 - 0.512731
stbA STY0373 probable fimbrial proteinchromosome CDS384266 537 - 0.478585
stbB STY0372 fimbrial chaperone proteinchromosome CDS383443 762 - 0.448819
stbC STY0371 outer membrane fimbrial usher proteinchromosome CDS380898 2562 - 0.539422
stbE STY0369 fimbrial chaperone proteinchromosome CDS378844 759 - 0.469038
stcB STY2380 putative fimbrial chaperone proteinchromosome CDS2211940 684 - 0.399123
stcC STY2379 putative outer membrane usher proteinchromosome CDS2209437 2490 - 0.457831
stdA STY3177 probable fimbrial proteinchromosome CDS3048066 582 - 0.524055
stdB STY3176 probable outer membrane fimbrial usher proteinchromosome CDS3045457 2490 - 0.610442
stdC STY3175 probable fimbrial chaperone proteinchromosome CDS3044673 744 - 0.583333
steB STY3086 outer membrane usher proteinchromosome CDS2949638 2700 + 0.553704
steC STY3087 periplasmic fimbrial chaperonechromosome CDS2952350 774 + 0.546512
steF STY3090 fimbrial subunitchromosome CDS2954131 537 + 0.482309
stgA STY3918 probable fimbrial subunit proteinchromosome CDS3780596 576 + 0.508681
stgB STY3919 fimbrial chaperone proteinchromosome CDS3781269 699 + 0.410587
sthA STY4944 putative fimbrial proteinchromosome CDS4804460 546 - 0.503663
sthB STY4943 putative fimbrial chaperone proteinchromosome CDS4803706 684 - 0.459064
sthD STY4940 putative fimbrial subunitchromosome CDS4800549 558 - 0.496416
tatA STY3586 twin argininte translocase protein Achromosome CDS3438745 255 - 0.454902
tatB STY3585 sec-independent translocasechromosome CDS3438193 549 - 0.544627
tatC STY3584 sec-independent protein translocase proteinchromosome CDS3437411 780 - 0.508974
tatE STY0682 twin argininte translocase protein Achromosome CDS679335 204 + 0.485294
tolB STY0794 translocation protein TolB precursorchromosome CDS790658 1293 + 0.559938
tolC STY3364 outer membrane channel precursor proteinchromosome CDS3206069 1476 + 0.522358
tolQ STY0791 TolQ proteinchromosome CDS788215 693 + 0.519481
tolR STY0792 tolR proteinchromosome CDS788911 429 + 0.51049
trhC HCM1.77 plasmid transfer proteinpHCM1 CDS51248 2682 + 0.419463
trhF HCM1.98 putative pilin maturation proteinpHCM1 CDS70694 513 + 0.393762
yajC STY0444 preprotein translocase subunit YajCchromosome CDS454176 333 + 0.51952
yidC STY3938 inner membrane protein translocase component YidCchromosome CDS3802080 1647 - 0.540984
yohG STY2402 putative lipoproteinchromosome CDS2234412 1437 - 0.580376
yrfC STY4305 hypothetical proteinchromosome CDS4184842 540 + 0.583333
yscR STY1701 putative type III secretion proteinchromosome CDS1627339 648 - 0.424383
 
Salmonella typhimurium LT2, SGSC1412
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSLT043 type II secretion system proteinpSLT CDS34155 1026 - 0.538012
pefA PSLT018 major fimbrial subunitpSLT CDS13569 519 - 0.531792
pefC PSLT017 usher proteinpSLT CDS10933 2409 - 0.589871
pefD PSLT016 chaperonepSLT CDS10248 693 - 0.584416
traC PSLT088 ATP-binding proteinpSLT CDS68593 2649 + 0.569649
 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_3607 putative adhesinchromosome CDS3623570 840 + 0.508333
NA SBO_3851 hypothetical proteinchromosome CDS3875732 438 + 0.557078
NA SBO_3605 putative adhesinchromosome CDS3618223 4056 + 0.501972
NA SBO_1900 hypothetical proteinchromosome CDS1881107 1137 - 0.469657
NA SBO_3850 hypothetical proteinchromosome CDS3875339 312 + 0.448718
NA SBO_1467 possible enzymechromosome CDS1442865 1257 + 0.518695
NA SBO_1899 hypothetical proteinchromosome CDS1880654 372 - 0.478495
NA SBO_2372 putative fimbrial-like proteinchromosome CDS2360444 468 - 0.557692
clpP SBO_0331 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS345525 624 + 0.509615
ecpD SBO_0126 probable pilin chaperonechromosome CDS140393 741 - 0.442645
exbB SBO_3000 ExbBchromosome CDS3002212 735 - 0.527891
exbD SBO_2999 ExbDchromosome CDS3001780 426 - 0.5
ffh SBO_2746 GTP-binding export factorchromosome CDS2755204 1362 - 0.543319
fimA SBO_4364 major type 1 subunit fimbrinchromosome CDS4416896 549 + 0.513661
fimC SBO_4366 periplasmic chaperonechromosome CDS4418085 726 + 0.442149
fimF SBO_4368 fimbrial morphologychromosome CDS4421523 531 + 0.493409
fimG SBO_4369 fimbrial morphologychromosome CDS4422066 504 + 0.52381
fimI SBO_4365 fimbrial proteinchromosome CDS4417410 639 + 0.494523
flgM SBO_1993 anti-FliA factorchromosome CDS1966528 330 + 0.533333
flgN SBO_1994 protein of flagellar biosynthesischromosome CDS1966862 417 + 0.47482
flhA SBO_1121 FlhAchromosome CDS1124544 2079 + 0.546417
flhB SBO_1120 putative part of export apparatus for flagellar proteinschromosome CDS1123520 1032 + 0.54845
fliE SBO_1071 FliEchromosome CDS1082649 315 + 0.549206
fliF SBO_1070 FliFchromosome CDS1080776 1659 - 0.547318
fliJ SBO_1065 flagellar fliJ proteinchromosome CDS1076028 444 - 0.529279
fliN SBO_1061 FliNchromosome CDS1072920 414 - 0.548309
fliQ SBO_1058 flagellar biosynthesischromosome CDS1071537 270 - 0.514815
fliR SBO_1057 flagellar biosynthesischromosome CDS1070743 786 - 0.475827
fliS SBO_1081 FliSchromosome CDS1090532 411 - 0.501217
ftsY SBO_3461 cell division membrane proteinchromosome CDS3452140 1494 - 0.534137
gspE SBO_3013 putative type II secretion proteinchromosome CDS3014040 1353 + 0.592018
gspF SBO_3014 putative type II secretion proteinchromosome CDS3015532 1224 + 0.580065
gspG SBO_3015 putative type II secretion proteinchromosome CDS3016772 456 + 0.519737
gspH SBO_3016 putative type II secretion proteinchromosome CDS3017264 468 + 0.549145
gspI SBO_3017 putative type II secretion proteinchromosome CDS3017791 372 + 0.575269
gspJ SBO_3018 putative type II secretion proteinchromosome CDS3018195 564 + 0.58156
gspK SBO_3019 putative type II secretion proteinchromosome CDS3018827 912 + 0.560307
gspL SBO_3020 GspLchromosome CDS3020053 861 + 0.574913
gspM SBO_3021 putative secretion pathway proteinchromosome CDS3020915 537 + 0.540037
hofC SBO_0094 HofCchromosome CDS102416 1203 - 0.528678
hofQ SBO_3378 putative transport porteinchromosome CDS3361490 1239 - 0.54318
lepB SBO_2596 leader peptidasechromosome CDS2601414 975 - 0.515897
lpfA SBO_3546 putative major fimbrial subunitchromosome CDS3556159 543 - 0.489871
lspA SBO_0026 prolipoprotein signal peptidasechromosome CDS25299 495 + 0.533333
ppdA SBO_2718 prepilin peptidase dependent protein Achromosome CDS2728955 471 - 0.541401
prlA SBO_3294 putative ATPase subunit of translocasechromosome CDS3291048 1332 - 0.496997
secA SBO_0086 preprotein translocasechromosome CDS96282 2706 + 0.523282
secB SBO_3615 SecBchromosome CDS3632446 468 - 0.512821
secD SBO_0302 SecDchromosome CDS316618 1848 + 0.531926
secE SBO_4001 preprotein translocasechromosome CDS4035780 384 + 0.554688
secF SBO_0303 SecFchromosome CDS318476 972 + 0.516461
secG SBO_3207 SecGchromosome CDS3212486 333 + 0.504505
sigA SBO_4150 serine proteasechromosome CDS4196985 3858 + 0.416796
sigA SBO_0233 serine proteasechromosome CDS247479 3858 + 0.416796
smf SBO_3279 Predicted Rossmann-fold nucleotide-binding protein involved in DNA uptakechromosome CDS3280718 1125 - 0.508444
sohB SBO_1794 putative proteasechromosome CDS1773322 1050 - 0.502857
sppA SBO_1321 protease IVchromosome CDS1305019 1857 - 0.519117
spy SBO_1347 Spychromosome CDS1331191 471 + 0.505308
tolB SBO_0599 TolBchromosome CDS622309 1293 + 0.531322
tolC SBO_2893 TolCchromosome CDS2896090 1488 + 0.514785
tolQ SBO_0596 TolQchromosome CDS619746 693 + 0.500722
tolR SBO_0597 TolRchromosome CDS620442 429 + 0.517483
yaiU SBO_0269 putative flagellin structural proteinchromosome CDS282183 1407 + 0.496091
yajC SBO_0301 hypothetical proteinchromosome CDS316258 333 + 0.495495
ybbJ SBO_0390 hypothetical proteinchromosome CDS408223 456 - 0.574561
ybeC SBO_0491 hypothetical proteinchromosome CDS509357 204 + 0.495098
ycbF SBO_2287 putative chaperonechromosome CDS2275664 738 - 0.517615
ychE SBO_1827 putative channel proteinchromosome CDS1804596 648 - 0.479938
ydeB SBO_1647 hypothetical proteinchromosome CDS1633735 666 - 0.507508
yejO SBO_2117 putative ATP-binding component of a transport systemchromosome CDS2095354 2334 + 0.489289
yfcS SBO_2375 putative chaperonechromosome CDS2361918 753 - 0.569721
yfcU SBO_2376 PapC-like porin proteinchromosome CDS2362690 2643 - 0.51154
yggR SBO_3039 putative protein transportchromosome CDS3038416 1026 + 0.545809
ygiL SBO_2901 putative fimbrial-like proteinchromosome CDS2903381 579 + 0.447323
yhgN SBO_3432 hypothetical proteinchromosome CDS3424561 594 + 0.503367
yidC SBO_3671 60 kDa inner-membrane proteinchromosome CDS3686200 1647 - 0.537948
yigU SBO_3852 hypothetical proteinchromosome CDS3876172 777 + 0.5148
yiiO SBO_3931 Uncharacterized periplasmic proteinchromosome CDS3959393 504 + 0.498016
yjaI SBO_4023 hypothetical proteinchromosome CDS4059687 567 - 0.516755
yraJ SBO_3240 putative outer membrane proteinchromosome CDS3245051 2334 - 0.476007
yrfC SBO_3381 hypothetical proteinchromosome CDS3363458 540 - 0.553704
 
Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SDY_2533 hypothetical proteinchromosome CDS2330794 489 - 0.494888
NA SDY_1202 hypothetical proteinchromosome CDS1111815 1020 + 0.464706
NA SDY_2532 putative fimbrial-like proteinchromosome CDS2330258 540 - 0.5
NA SDY_0424 hypothetical proteinchromosome CDS411486 1494 - 0.600402
NA SDY_4570 hypothetical proteinchromosome CDS4285579 1212 - 0.509901
NA SDY_1373 hypothetical proteinchromosome CDS1270401 498 + 0.546185
NA SDY_4035 hypothetical proteinchromosome CDS3771929 837 + 0.51374
NA SDY_0912 hypothetical proteinchromosome CDS861552 834 + 0.496403
NA SDY_2426 hypothetical proteinchromosome CDS2226292 654 - 0.503058
NA SDY_0423 hypothetical proteinchromosome CDS407525 3948 - 0.60613
NA SDY_3907 hypothetical proteinchromosome CDS3638059 312 - 0.448718
NA SDY_0429 hypothetical proteinchromosome CDS416946 621 - 0.555556
NA SDY_0151 hypothetical proteinchromosome CDS152152 492 - 0.424797
NA SDY_0425 hypothetical proteinchromosome CDS412889 2877 - 0.575947
NA SDY_0422 hypothetical proteinchromosome CDS403103 4398 - 0.617326
NA SDY_1077 hypothetical proteinchromosome CDS1008318 534 + 0.477528
NA SDY_0428 hypothetical proteinchromosome CDS416643 294 - 0.465986
NA SDY_0498 hypothetical proteinchromosome CDS484134 684 + 0.502924
NA SDY_2536 hypothetical proteinchromosome CDS2332573 600 - 0.565
NA SDY_3581 putative DNA processing proteinchromosome CDS3320562 1296 - 0.505401
NA SDY_0916 putative fimbrial-like proteinchromosome CDS864732 564 + 0.47695
NA SDY_4033 hypothetical proteinchromosome CDS3767585 1200 + 0.501667
NA SDY_0497 hypothetical proteinchromosome CDS483003 993 + 0.466264
NA SDY_0915 putative fimbrial-like proteinchromosome CDS864263 510 + 0.478431
NA SDY_4034 hypothetical proteinchromosome CDS3769333 2508 + 0.524721
NA SDY_2537 putative fimbrial usherchromosome CDS2333151 1731 - 0.553437
NA SDY_1891 possible enzymechromosome CDS1725931 1257 - 0.515513
NA SDY_3906 hypothetical proteinchromosome CDS3637540 438 - 0.557078
NA SDY_1374 putative outer membrane channel proteinchromosome CDS1270947 828 + 0.536232
ccmD SDY_0880 heme exporter protein Cchromosome CDS828374 210 + 0.561905
clpP SDY_0295 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS288947 624 - 0.508013
exbB SDY_3067 ExbBchromosome CDS2845226 735 + 0.530612
exbD SDY_3068 ExbDchromosome CDS2845967 426 + 0.49061
ffh SDY_2784 GTP-binding export factorchromosome CDS2577946 1362 - 0.538913
flgM SDY_2081 anti-FliA factorchromosome CDS1891347 294 + 0.513605
fliS SDY_1090 repressor of class 3a and 3b operonschromosome CDS1017681 411 - 0.498783
ftsY SDY_3615 cell division membrane proteinchromosome CDS3351435 1497 - 0.529726
gspC SDY_3092 putative general secretion protein GspCchromosome CDS2867995 831 + 0.519856
gspD SDY_3093 putative type II secretion proteinchromosome CDS2869065 1836 + 0.559368
gspE SDY_3094 putative type II secretion proteinchromosome CDS2870900 1494 + 0.586345
gspF SDY_3095 putative type II secretion proteinchromosome CDS2872393 1200 + 0.589167
gspG SDY_3096 putative type II secretion proteinchromosome CDS2873633 456 + 0.517544
gspH SDY_3097 putative type II secretion proteinchromosome CDS2874125 531 + 0.551789
gspI SDY_3098 putative type II secretion proteinchromosome CDS2874652 372 + 0.569892
gspJ SDY_3099 putative type II secretion proteinchromosome CDS2875056 570 + 0.575439
gspK SDY_3100 putative type II secretion proteinchromosome CDS2875622 978 + 0.55317
gspL SDY_3101 putative general secretion pathway for protein export (GSP)chromosome CDS2876914 861 + 0.567944
gspM SDY_3102 putative secretion pathway proteinchromosome CDS2877890 423 + 0.539007
hofB SDY_0137 HofBchromosome CDS136297 1335 - 0.539326
icsA SDY_P214 IcsApSD1_197 CDS170357 3309 + 0.409187
lepB SDY_2809 leader peptidasechromosome CDS2599176 975 - 0.518974
lspA SDY_0049 prolipoprotein signal peptidasechromosome CDS43996 495 + 0.529293
mxiA SDY_P185 MxiApSD1_197 CDS148836 2067 + 0.347363
mxiD SDY_P183 MxiDpSD1_197 CDS146043 1701 + 0.336273
mxiJ SDY_P177 MxiJpSD1_197 CDS142596 726 + 0.34573
nfrB SDY_0266 bacteriophage N4 receptorchromosome CDS260895 1965 - 0.533842
ppdA SDY_3043 prepilin peptidase dependent protein Achromosome CDS2820335 471 - 0.541401
ppdB SDY_3042 prepilin peptidase dependent protein Bchromosome CDS2819781 564 - 0.52305
ppdD SDY_0138 prelipin peptidase dependent proteinchromosome CDS137641 441 - 0.52381
prlA SDY_3476 putative ATPase subunit of translocasechromosome CDS3225204 1332 - 0.496246
secA SDY_0128 preprotein translocasechromosome CDS128932 2706 + 0.521434
secB SDY_4042 SecBchromosome CDS3779442 468 - 0.508547
secD SDY_0326 SecDchromosome CDS314415 1848 - 0.531385
secE SDY_3747 preprotein translocasechromosome CDS3480927 384 - 0.554688
secF SDY_0325 protein secretion, membrane proteinchromosome CDS313433 972 - 0.514403
secG SDY_3356 protein export - membrane proteinchromosome CDS3113578 333 - 0.498498
sfmC SDY_0256 putative chaperonechromosome CDS253042 366 + 0.434426
smf SDY_3462 predicted Rossmann-fold nucleotide-binding proteinchromosome CDS3214872 1125 - 0.511111
sohB SDY_1342 putative proteasechromosome CDS1239881 1041 + 0.49952
spa24 SDY_P191 Spa24pSD1_197 CDS154788 651 + 0.345622
spa29 SDY_P192 Spa29pSD1_197 CDS155713 771 + 0.328145
spa33 SDY_P190 Spa33pSD1_197 CDS153902 882 + 0.320862
spa40 SDY_P193 Spa40pSD1_197 CDS156490 1029 + 0.318756
spa47 SDY_P187 Spa47pSD1_197 CDS151320 1293 + 0.392885
sppA SDY_1507 protease IVchromosome CDS1378879 1857 - 0.519655
spy SDY_1534 Spychromosome CDS1406110 486 + 0.506173
tolB SDY_0688 periplasmic proteinchromosome CDS650368 1293 + 0.53519
tolC SDY_3205 outer membrane channelchromosome CDS2967943 1488 - 0.513441
tolQ SDY_0685 inner membrane proteinchromosome CDS647781 693 + 0.502164
tolR SDY_0686 putative inner membrane proteinchromosome CDS648477 429 + 0.515152
traD SDY_P117 hypothetical proteinpSD1_197 CDS93565 1515 + 0.535314
yajC SDY_0327 hypothetical proteinchromosome CDS316290 333 - 0.495495
ybbJ SDY_0411 hypothetical proteinchromosome CDS394660 459 + 0.586057
ybeC SDY_0549 hypothetical proteinchromosome CDS531613 204 + 0.490196
ybgD SDY_0655 putative fimbrial-like proteinchromosome CDS618980 567 - 0.455026
ybgP SDY_0652 putative chaperonechromosome CDS614951 696 - 0.521552
ycbF SDY_0917 putative chaperonechromosome CDS865261 738 + 0.512195
ydeB SDY_1598 hypothetical proteinchromosome CDS1460589 666 + 0.5
yehB SDY_2287 putative outer membrane proteinchromosome CDS2077541 1794 - 0.458751
yejO SDY_0889 putative ATP-binding component of a transport systemchromosome CDS835867 2055 + 0.492457
yfaL SDY_2425 putative ATP-binding component of a transport systemchromosome CDS2223994 2163 - 0.54184
yfcS SDY_2535 putative chaperonechromosome CDS2331801 750 - 0.52
yggR SDY_3121 putative protein transportchromosome CDS2894543 1026 + 0.549708
yhgN SDY_3580 hypothetical proteinchromosome CDS3319923 594 + 0.501683
yidC SDY_4188 60 KD inner-membrane proteinchromosome CDS3920955 1647 + 0.536733
yigU SDY_3905 hypothetical proteinchromosome CDS3636761 777 - 0.516088
yiiO SDY_3833 Uncharacterized periplasmic proteinchromosome CDS3565926 504 - 0.501984
yjaI SDY_3724 hypothetical proteinchromosome CDS3456081 561 + 0.511586
yohG SDY_2150 putative channel/filament proteinschromosome CDS1948211 921 + 0.537459
yohH SDY_2149 hypothetical proteinchromosome CDS1947773 345 + 0.492754
ypjA SDY_1204 putative ATP-binding component of a transport systemchromosome CDS1113426 2595 + 0.522158
yraK SDY_3324 putative fimbrial proteinchromosome CDS3082053 1092 + 0.477106
 
Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S1008 putative fimbrial-like proteinchromosome CDS993920 543 + 0.471455
NA S4250 possible chaperonechromosome CDS4166011 561 + 0.420677
NA S0741 head-tail preconnector gp5chromosome CDS726004 1506 + 0.588977
NA S3755 hypothetical proteinchromosome CDS3651915 369 - 0.479675
NA S1242 hypothetical proteinchromosome CDS1203948 2322 + 0.472438
NA S3194 outer membrane fluffing proteinchromosome CDS3078306 894 + 0.56264
NA S3838 sec-independent translocasechromosome CDS3737439 516 - 0.554264
NA S4254 probable fimbrial protein remnantchromosome CDS4166615 1080 + 0.434259
NA S3211 hypothetical proteinchromosome CDS3093171 240 - 0.429167
NA S3965 putative secreted autotransporter toxinchromosome CDS3860121 507 + 0.441815
NA S1009 putative fimbrial-like proteinchromosome CDS994422 564 + 0.473404
NA S3195 outer membrane fluffing proteinchromosome CDS3079305 2121 + 0.585101
NA S1824 possible enzymechromosome CDS1764150 1257 - 0.518695
ccmD S2412 heme exporter protein Cchromosome CDS2296835 210 - 0.566667
clpP S0388 ATP-dependent Clp protease proteolytic subunitchromosome CDS391578 624 + 0.509615
exbB S3254 enterochelin transporter (uptake)chromosome CDS3135354 735 - 0.526531
exbD S3253 enterochelin transporter (uptake)chromosome CDS3134922 426 - 0.502347
ffh S2847 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2739607 1362 - 0.54185
fhiA S0299 flagellar biosynthetic protein FlhAchromosome CDS298315 1740 - 0.583908
fimA S4465 major type 1 subunit fimbrin (pilin)chromosome CDS4372652 549 - 0.510018
fimC S4463 periplasmic chaperonechromosome CDS4371286 726 - 0.442149
fimF S4458 minor fimbrial subunit, precursor polypeptidechromosome CDS4367267 531 - 0.489642
fimG S4457 minor fimbrial subunit, precursor polypeptidechromosome CDS4366751 504 - 0.529762
fimI S4464 fimbrial proteinchromosome CDS4372048 639 - 0.499218
flgM S1155 flagellar protein FlgMchromosome CDS1120488 294 - 0.530612
flgN S1154 flagella synthesis protein FlgNchromosome CDS1120067 417 - 0.479616
flhB S2014 flagellar biosynthesis proteinchromosome CDS1936449 1194 - 0.551089
fliE S2076 flagellar basal body proteinchromosome CDS1989322 315 - 0.549206
fliH S2079 flagellar assembly proteinchromosome CDS1992490 687 + 0.572052
fliI S2080 flagellum-specific ATP synthasechromosome CDS1993176 1374 + 0.580058
fliN S2085 flagellar motor switch proteinchromosome CDS1997611 414 + 0.557971
fliQ S2088 flagellar biosynthesis proteinchromosome CDS1999167 270 + 0.511111
fliR S2089 flagellar biosynthesis proteinchromosome CDS1999445 786 + 0.47201
fliS S2064 flagellar protein FliSchromosome CDS1978105 411 + 0.481752
ftsY S4281 cell division membrane proteinchromosome CDS4199238 1497 + 0.53173
hofC S0105 putative integral membrane proteinchromosome CDS112511 1203 - 0.525353
hofQ S4353 putative transport porteinchromosome CDS4282787 1239 + 0.543987
lepB S2803 leader peptidase (signal peptidase I)chromosome CDS2694994 975 - 0.52
lpfA S3961 putative major fimbrial subunitchromosome CDS3855926 573 + 0.474695
lpfC S4048 putative long polar fimbriaechromosome CDS3940913 2523 - 0.470075
lspA S0026 signal peptidase IIchromosome CDS24161 495 + 0.537374
pic S3178 serine protease precurserchromosome CDS3059914 3213 - 0.511983
ppdB S3033 prepilin peptidase dependent protein Bchromosome CDS2918196 564 - 0.519504
ppdD S0107 prelipin peptidase dependent proteinchromosome CDS114860 441 - 0.530612
prlA S4430 preprotein translocase SecYchromosome CDS4344224 1332 + 0.497748
secA S0097 translocasechromosome CDS106384 2706 + 0.522173
secB S4120 export protein SecBchromosome CDS4018493 468 + 0.510684
secD S0353 protein export protein SecDchromosome CDS356280 1848 + 0.531926
secE S3681 translocasechromosome CDS3575725 384 - 0.552083
secF S0354 protein export protein SecFchromosome CDS358138 972 + 0.515432
secG S3433 protein-export membrane proteinchromosome CDS3305473 333 - 0.501502
sfmA S0469 putative fimbrial-like proteinchromosome CDS476502 576 + 0.4375
sfmC S0470 putative chaperonechromosome CDS477297 693 + 0.431457
sigA S4824 serine proteasechromosome CDS3052614 3858 + 0.417574
smf S3542 hypothetical proteinchromosome CDS3405401 1125 - 0.510222
sohB S1359 putative proteasechromosome CDS1323483 1050 + 0.505714
sppA S1572 protease IV, a signal peptide peptidasechromosome CDS1530434 1857 - 0.519655
spy S1600 periplasmic proteinchromosome CDS1558202 486 + 0.50823
tatA S3840 twin argininte translocase protein Achromosome CDS3737958 312 - 0.448718
tatE S0676 twin argininte translocase protein Achromosome CDS687603 204 - 0.5
tolB S0570 translocation protein TolB precursorchromosome CDS574322 1293 - 0.531322
tolC S3280 outer membrane channel precursor proteinchromosome CDS3159914 1482 + 0.51417
tolQ S0573 inner membrane protein TolQchromosome CDS577485 693 - 0.500722
tolR S0572 putative inner membrane proteinchromosome CDS577053 429 - 0.517483
trbL S2716 putative mating pair formation proteinchromosome CDS2607237 807 - 0.530359
yajC S0352 preprotein translocase subunit YajCchromosome CDS355920 333 + 0.495495
ybbJ S0440 hypothetical proteinchromosome CDS450522 456 - 0.576754
ybgD S0591 putative fimbrial-like proteinchromosome CDS600357 567 + 0.47619
ybgP S0593 putative chaperonechromosome CDS603448 732 + 0.494536
ybgQ S0592 putative outer membrane proteinchromosome CDS600974 2460 + 0.493902
ycbF S1010 putative chaperonechromosome CDS994951 738 + 0.509485
ycbS S1006 putative outer membrane proteinchromosome CDS990248 2601 + 0.478278
ychE S1327 putative channel proteinchromosome CDS1293968 648 + 0.481481
ydeB S1692 hypothetical proteinchromosome CDS1636473 666 + 0.510511
yehB S2296 putative outer membrane proteinchromosome CDS2175483 2481 - 0.455462
yehD S2298 putative fimbrial-like proteinchromosome CDS2178734 525 - 0.405714
yejO S2406 putative ATP-binding component of a transport systemchromosome CDS2289047 2511 - 0.486659
yggR S3146 putative transport proteinchromosome CDS3024584 1026 - 0.540936
yhgN S4306 hypothetical proteinchromosome CDS4224353 594 - 0.501683
yidC S4012 inner membrane protein translocase component YidCchromosome CDS3906912 1647 + 0.534912
yigU S3837 hypothetical proteinchromosome CDS3736660 777 - 0.513514
yjaI S3661 hypothetical proteinchromosome CDS3552409 567 + 0.516755
yjcP S3607 putative enzymechromosome CDS3481775 1467 - 0.556919
ylcB S0481 putative resistance proteinchromosome CDS489307 1383 + 0.518438
yraI S3397 putative chaperonechromosome CDS3270079 696 + 0.448276
yraK S3403 putative fimbrial proteinchromosome CDS3274664 1092 + 0.478938
yrfC S4350 hypothetical proteinchromosome CDS4281516 540 + 0.553704
 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF2413 hypothetical proteinchromosome CDS2460544 786 - 0.529262
NA SF0944 putative fimbrial-like proteinchromosome CDS990458 564 + 0.473404
NA SF3915 sec-independent translocasechromosome CDS4035358 516 + 0.554264
NA SF0316 hypothetical proteinchromosome CDS329654 624 - 0.453526
NA SF0463 hypothetical proteinchromosome CDS478218 501 + 0.431138
NA SF3641 hypothetical proteinchromosome CDS3746657 2973 + 0.515304
NA SF2224 hypothetical proteinchromosome CDS2251317 357 - 0.498599
NA SF3804 similar to serine proteasechromosome CDS3913711 990 - 0.339394
NA SF2991 outer membrane fluffing proteinchromosome CDS3087470 3129 + 0.578779
NA SF3007 hypothetical proteinchromosome CDS3103149 468 - 0.399573
NA SF3640 hypothetical proteinchromosome CDS3744967 1149 + 0.492602
NA SF3992 hypothetical proteinchromosome CDS4120936 369 + 0.479675
NA SF2223 putative enzymechromosome CDS2250147 1071 - 0.556489
NA SF3720 similar to serine proteasechromosome CDS3829720 759 + 0.397892
NA SF1157 hypothetical proteinchromosome CDS1201042 2322 + 0.472007
NA SF0943 putative fimbrial-like proteinchromosome CDS989956 543 + 0.471455
NA SF0703 head-tail preconnector gp5chromosome CDS729846 1506 + 0.588977
NA SF3803 putative secreted autotransporter toxinchromosome CDS3912667 507 - 0.441815
NA SF1694 possible enzymechromosome CDS1725935 1257 - 0.518695
NA SF2409 similar to fimbrial proteinchromosome CDS2458261 525 - 0.455238
NA SF3008 hypothetical proteinchromosome CDS3103682 240 - 0.429167
NA SF3511 hypothetical proteinchromosome CDS3603586 1149 - 0.442994
ccmD SF2282 heme exporter protein Cchromosome CDS2317378 210 - 0.566667
clpP SF0382 ATP-dependent Clp protease proteolytic subunitchromosome CDS391777 624 + 0.509615
exbB SF3051 enterochelin transporter (uptake)chromosome CDS3146691 735 - 0.526531
exbD SF3050 enterochelin transporter (uptake)chromosome CDS3146259 426 - 0.502347
ffh SF2670 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2744974 1362 - 0.54185
fhiA SF0278 flagellar biosynthetic protein FlhAchromosome CDS295763 1740 - 0.584483
fimA SF4208 major type 1 subunit fimbrin (pilin)chromosome CDS4381556 549 - 0.510018
fimC SF4206 periplasmic chaperonechromosome CDS4380190 726 - 0.442149
fimF SF4202 minor fimbrial subunit, precursor polypeptidechromosome CDS4376171 531 - 0.489642
fimG SF4201 minor fimbrial subunit, precursor polypeptidechromosome CDS4375655 504 - 0.527778
fimI SF4207 fimbrial proteinchromosome CDS4380952 639 - 0.499218
flgM SF1077 flagellar protein FlgMchromosome CDS1117596 294 - 0.530612
flgN SF1076 flagella synthesis protein FlgNchromosome CDS1117175 417 - 0.479616
flhB SF1924 flagellar biosynthesis proteinchromosome CDS1959784 1194 - 0.551089
fliE SF1982 flagellar basal body proteinchromosome CDS2012670 315 - 0.549206
fliH SF1985 flagellar assembly proteinchromosome CDS2015838 687 + 0.572052
fliI SF1986 flagellum-specific ATP synthasechromosome CDS2016524 1374 + 0.580058
fliN SF1991 flagellar motor switch proteinchromosome CDS2020959 414 + 0.557971
fliP SF1993 flagellar biosynthesis proteinchromosome CDS2021863 615 + 0.520325
fliQ SF1994 flagellar biosynthesis proteinchromosome CDS2022487 270 + 0.511111
fliR SF1995 flagellar biosynthesis proteinchromosome CDS2022765 786 + 0.47201
fliS SF1968 flagellar protein FliSchromosome CDS2001449 411 + 0.481752
ftsY SF3482 cell division membrane proteinchromosome CDS3573269 1497 - 0.53173
hofC SF0103 putative integral membrane proteinchromosome CDS113024 1203 - 0.525353
hofQ SF3409 putative transport porteinchromosome CDS3488679 1239 - 0.543987
icsA/virG CP0182 IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellulpCP301 CDS149644 3309 + 0.409791
lepB SF2630 leader peptidase (signal peptidase I)chromosome CDS2701550 975 - 0.52
lpfA SF3807 putative major fimbrial subunitchromosome CDS3916796 573 - 0.474695
lpfC SF3723 putative long polar fimbriaechromosome CDS3831823 2523 + 0.470075
lspA SF0023 signal peptidase IIchromosome CDS24162 495 + 0.537374
mxiA CP0147 MxiA, innermembrane protein, component of the Mxi-Spa secretion machinerypCP301 CDS126749 2061 + 0.342067
mxiD CP0145 MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinerypCP301 CDS123950 1701 + 0.33157
mxiJ CP0139 MxiJ, lipoprotein, component of the Mxi-Spa secretion machinerypCP301 CDS120503 726 + 0.342975
nfrB SF0470 bacteriophage N4 receptor, outer membrane proteinchromosome CDS484845 2238 - 0.521448
pic SF2973 serine protease precurserchromosome CDS3067738 3213 - 0.511983
ppdD SF0105 prelipin peptidase dependent proteinchromosome CDS115373 441 - 0.530612
prlA SF3332 preprotein translocase SecYchromosome CDS3427150 1332 - 0.496997
secA SF0095 translocasechromosome CDS106897 2706 + 0.522542
secB SF3648 export protein SecBchromosome CDS3756257 468 - 0.510684
secD SF0345 protein export protein SecDchromosome CDS357145 1848 + 0.531926
secE SF4054 translocasechromosome CDS4197111 384 + 0.546875
secF SF0346 protein export protein SecFchromosome CDS359003 972 + 0.515432
secG SF3215 protein-export membrane proteinchromosome CDS3314357 333 - 0.501502
sepA CP0070 SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domainpCP301 CDS52745 4095 - 0.487424
sfmA SF0461 putative fimbrial-like proteinchromosome CDS476700 576 + 0.4375
sfmC SF0462 putative chaperonechromosome CDS477495 693 + 0.431457
sigA SF2968 serine proteasechromosome CDS3060438 3858 + 0.417574
smf SF3317 hypothetical proteinchromosome CDS3415226 1125 - 0.510222
sohB SF1274 putative proteasechromosome CDS1323616 1050 + 0.505714
spa24 CP0153 Spa24, component of the Mxi-Spa secretion machinerypCP301 CDS132695 651 + 0.345622
spa29 CP0155 Spa29, component of the Mxi-Spa secretion machinerypCP301 CDS133620 771 + 0.326848
spa33 CP0152 Spa33, component of the Mxi-Spa secretion machinerypCP301 CDS131944 747 + 0.314592
spa40 CP0156 type III secretion proteinpCP301 CDS134397 1029 + 0.317784
spa47 CP0149 type III secretion system ATPasepCP301 CDS129227 1293 + 0.392111
sppA SF1457 protease IV, a signal peptide peptidasechromosome CDS1492060 1857 - 0.519655
spy SF1483 periplasmic proteinchromosome CDS1519826 486 + 0.50823
tatA SF3914 twin argininte translocase protein Achromosome CDS4035043 312 + 0.448718
tatE SF0654 twin argininte translocase protein Achromosome CDS691371 204 - 0.5
tolB SF0557 translocation protein TolB precursorchromosome CDS578224 1293 - 0.531322
tolC SF3075 outer membrane channel precursor proteinchromosome CDS3171251 1482 + 0.513495
tolQ SF0560 inner membrane protein TolQchromosome CDS581387 693 - 0.500722
tolR SF0559 putative inner membrane proteinchromosome CDS580955 429 - 0.517483
yajC SF0344 preprotein translocase subunit YajCchromosome CDS356785 333 + 0.495495
ybbJ SF0433 hypothetical proteinchromosome CDS450721 456 - 0.576754
ybgD SF0578 putative fimbrial-like proteinchromosome CDS604259 567 + 0.47619
ybgP SF0580 putative chaperonechromosome CDS607350 732 + 0.494536
ybgQ SF0579 putative outer membrane proteinchromosome CDS604876 2460 + 0.493902
ycbF SF0945 putative chaperonechromosome CDS990987 738 + 0.509485
ycbS SF0941 putative outer membrane proteinchromosome CDS986284 2601 + 0.478278
ychE SF1241 putative channel proteinchromosome CDS1294075 648 + 0.481481
ydeB SF1565 hypothetical proteinchromosome CDS1596822 666 + 0.510511
yehB SF2171 putative outer membrane proteinchromosome CDS2193959 2481 - 0.455865
yehD SF2175 putative fimbrial-like proteinchromosome CDS2197986 525 - 0.405714
yejO SF2276 putative ATP-binding component of a transport systemchromosome CDS2309590 2511 - 0.486659
yggR SF2942 putative transport proteinchromosome CDS3032395 1026 - 0.540936
yhgN SF3457 hypothetical proteinchromosome CDS3547719 594 + 0.501683
yidC SF3759 inner membrane protein translocase component YidCchromosome CDS3866037 1647 - 0.535519
yigU SF3916 hypothetical proteinchromosome CDS4035876 777 + 0.513514
yjaI SF4074 hypothetical proteinchromosome CDS4220245 567 - 0.516755
yjcP SF4140 putative enzymechromosome CDS4309590 1467 - 0.556919
ylcB SF0473 putative resistance proteinchromosome CDS489504 1383 + 0.517715
yraI SF3181 putative chaperonechromosome CDS3278961 696 + 0.448276
yraK SF3186 putative fimbrial proteinchromosome CDS3283548 1092 + 0.478938
yrfC SF3412 hypothetical proteinchromosome CDS3490649 540 - 0.553704
ytfI SF4271 hypothetical proteinchromosome CDS4449336 939 - 0.356762
 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_3661 hypothetical proteinchromosome CDS3747795 516 - 0.554264
NA SFV_3662 hypothetical proteinchromosome CDS3748314 312 - 0.448718
NA SFV_0951 putative fimbrial-like proteinchromosome CDS998110 543 + 0.471455
NA SFV_3930 putative adhesinchromosome CDS4033546 1149 - 0.492602
NA SFV_1686 possible enzymechromosome CDS1724004 1257 - 0.518695
ccmD SFV_2274 heme exporter protein Cchromosome CDS2311075 210 - 0.566667
clpP SFV_0411 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS429428 624 + 0.509615
exbD SFV_3056 Biopolymer transport exbD proteinchromosome CDS3119967 426 - 0.5
fimA SFV_4213 major type 1 subunit fimbrin (pilin)chromosome CDS4352224 549 - 0.51184
fimF SFV_4208 fimbrial morphologychromosome CDS4346838 531 - 0.489642
fimG SFV_4207 fimbrial morphologychromosome CDS4346322 504 - 0.529762
flgM SFV_1093 Negative regulator of flagellin synthesischromosome CDS1135665 294 - 0.530612
flgN SFV_1092 flagellar biosynthetic proteinchromosome CDS1135244 417 - 0.479616
fliE SFV_1980 flagellar hook-basal body complex protein FliEchromosome CDS2021341 315 - 0.549206
fliH SFV_1983 flagellar protein FliHchromosome CDS2024508 687 + 0.572052
fliN SFV_1989 flagellar motor switch protein FliNchromosome CDS2029629 414 + 0.557971
fliP SFV_1991 flagellar biosynthetic protein FliPchromosome CDS2030410 738 + 0.53794
fliQ SFV_1992 flagellar biosynthetic protein FliQchromosome CDS2031157 270 + 0.511111
fliR SFV_1993 flagellar biosynthetic protein FliRchromosome CDS2031435 786 + 0.47201
fliS SFV_1969 flagellar protein FliSchromosome CDS2010121 411 + 0.484185
lepB SFV_2631 leader peptidasechromosome CDS2698030 975 - 0.52
lpfA SFV_3774 putative major fimbrial subunitchromosome CDS3865552 573 + 0.474695
ppdB SFV_2903 prepilin peptidase dependent protein Bchromosome CDS2970480 564 - 0.519504
ppdD SFV_0099 prelipin peptidase dependent proteinchromosome CDS115043 441 - 0.530612
prlA SFV_3320 putative ATPase subunit of translocasechromosome CDS3389033 1332 - 0.496997
secA SFV_0091 preprotein translocase subunit SecAchromosome CDS106567 2706 + 0.522912
secB SFV_3922 export protein SecBchromosome CDS4023300 468 + 0.510684
secE SFV_4053 preprotein translocasechromosome CDS4168295 384 + 0.552083
secF SFV_0374 protein secretion, membrane proteinchromosome CDS393102 972 + 0.516461
smf SFV_3305 hypothetical proteinchromosome CDS3377109 1125 - 0.510222
sppA SFV_1451 protease IV, a signal peptide peptidasechromosome CDS1495126 1857 - 0.519655
spy SFV_1477 periplasmic proteinchromosome CDS1522283 486 + 0.50823
tolC SFV_3080 outer membrane channel precursor proteinchromosome CDS3144993 1482 + 0.51417
tolR SFV_0598 TolR proteinchromosome CDS624053 429 - 0.517483
yajC SFV_0372 hypothetical proteinchromosome CDS390884 333 + 0.495495
ybeC SFV_0699 hypothetical proteinchromosome CDS735857 204 - 0.5
ybgD SFV_0616 putative fimbrial-like proteinchromosome CDS647357 567 + 0.47619
ybgP SFV_0618 putative chaperonechromosome CDS650448 732 + 0.495902
ychE SFV_1254 putative channel proteinchromosome CDS1308769 648 + 0.481481
ydeB SFV_1589 hypothetical proteinchromosome CDS1624052 666 - 0.510511
yehB SFV_2164 putative outer membrane proteinchromosome CDS2196259 2481 - 0.455462
yiiO SFV_3580 Uncharacterized periplasmic proteinchromosome CDS3660071 501 - 0.500998
yjaI SFV_4074 hypothetical proteinchromosome CDS4191428 567 - 0.516755
yjcP SFV_4131 putative enzymechromosome CDS4261162 1467 + 0.556919
yraK SFV_3175 putative fimbrial proteinchromosome CDS3247205 1092 + 0.478938
yrfC SFV_3399 hypothetical proteinchromosome CDS3452563 540 - 0.555556
 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSON_3675 putative DNA processing proteinchromosome CDS3852249 1296 - 0.50463
NA SSON_0947 putative fimbrial-like proteinchromosome CDS1021484 564 + 0.47695
NA SSON_2427 putative minor capsid protein precursorchromosome CDS2562275 1281 - 0.605777
NA SSO_P144 adhesion protein, fragmentpSS_046 CDS129560 258 + 0.391473
NA SSON_0877 putative protease/scaffold proteinchromosome CDS931489 1146 + 0.5
NA SSON_2676 hypothetical proteinchromosome CDS2835968 1272 - 0.546384
NA SSON_3900 putative fimbrial chaperonechromosome CDS4116983 303 + 0.376238
NA SSON_4012 hypothetical proteinchromosome CDS4239740 438 + 0.559361
NA SSON_0026 hypothetical proteinchromosome CDS25267 369 - 0.384824
NA SSON_3803 putative adhesinchromosome CDS3988430 4851 - 0.505875
NA SSON_4011 hypothetical proteinchromosome CDS4239347 312 + 0.451923
NA SSON_1492 possible enzymechromosome CDS1565850 1257 + 0.5179
NA SSON_0024 hypothetical proteinchromosome CDS23714 804 - 0.402985
NA SSON_1019 hypothetical proteinchromosome CDS1094701 2181 - 0.417698
NA SSON_2391 putative minor fimbrial subunitchromosome CDS2521916 525 - 0.457143
ccmD SSON_2256 heme exporter protein Cchromosome CDS2369977 210 - 0.566667
clpP SSON_0420 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS445474 624 + 0.511218
ecpD SSON_0152 probable pilin chaperone similar to PapDchromosome CDS169651 741 - 0.442645
exbB SSON_3149 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3307576 735 - 0.530612
exbD SSON_3148 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3307144 426 - 0.502347
ffh SSON_2767 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2918772 1362 - 0.544787
fhiA SSON_0273 flagellar biosynthesischromosome CDS299468 1740 - 0.574713
flgM SSON_1091 flagellar proteinchromosome CDS1171140 294 - 0.520408
flgN SSON_1090 protein of flagellar biosynthesischromosome CDS1170719 417 - 0.479616
flhB SSON_1240 putative part of export apparatus for flagellar proteinschromosome CDS1314044 972 + 0.544239
fliE SSON_1995 flagellar basal-body componentchromosome CDS2093645 315 - 0.539683
fliF SSON_1996 flagellar basal-body MS(membrane and supramembrane)-ring and collar proteinchromosome CDS2094175 1659 + 0.546715
fliH SSON_1998 flagellar biosynthesis proteinchromosome CDS2096793 708 + 0.573446
fliI SSON_1999 flagellum-specific ATP synthasechromosome CDS2097500 1374 + 0.580058
fliJ SSON_2000 flagellar fliJ proteinchromosome CDS2098892 444 + 0.527027
fliN SSON_2004 FliNchromosome CDS2102034 414 + 0.548309
fliP SSON_2006 flagellar biosynthesischromosome CDS2102815 738 + 0.531165
fliQ SSON_2007 flagellar biosynthesischromosome CDS2103562 270 + 0.514815
fliR SSON_2008 flagellar biosynthesischromosome CDS2103840 786 + 0.477099
fliS SSON_1981 flagellar repressor of class 3a and 3b operonschromosome CDS2081511 411 + 0.493917
ftsY SSON_3702 cell division membrane proteinchromosome CDS3880016 1497 - 0.532398
hofC SSON_0114 putative integral membrane proteinchromosome CDS123749 1203 - 0.526185
hofQ SSON_3522 putative transport porteinchromosome CDS3682112 1239 - 0.542373
icsA/virG SSO_P143 IcsA/VirGpSS_046 CDS126066 3309 + 0.40828
lepB SSON_2692 leader peptidasechromosome CDS2849401 975 - 0.516923
lpfA SSON_3899 putative major fimbrial subunitchromosome CDS4116363 573 + 0.47644
lspA SSON_0032 prolipoprotein signal peptidasechromosome CDS32373 495 + 0.535354
mxiA SSO_P109 MxiApSS_046 CDS99964 2067 + 0.341074
mxiD SSO_P107 MxiDpSS_046 CDS97171 1701 + 0.33157
mxiJ SSO_P101 MxiJpSS_046 CDS93724 726 + 0.341598
ppdA SSON_2983 prepilin peptidase dependent protein Achromosome CDS3133322 471 - 0.541401
ppdB SSON_2982 prepilin peptidase dependent protein Bchromosome CDS3132768 564 - 0.521277
ppdD SSON_0116 prelipin peptidase dependent proteinchromosome CDS126337 441 - 0.52381
prlA SSON_3441 putative ATPase subunit of translocasechromosome CDS3615566 1332 - 0.493243
secA SSON_0106 preprotein translocase; secretion proteinchromosome CDS117622 2706 + 0.523651
secB SSON_3796 SecBchromosome CDS3981335 468 + 0.512821
secD SSON_0385 SecDchromosome CDS412741 1848 + 0.531926
secE SSON_4154 preprotein translocasechromosome CDS4396489 384 + 0.552083
secF SSON_0386 SecFchromosome CDS414599 972 + 0.518519
secG SSON_3323 SecGchromosome CDS3501246 333 - 0.498498
sfmF SSON_0507 putative fimbrial-like proteinchromosome CDS536175 516 + 0.498062
sigA SSON_3223 serine proteasechromosome CDS3389961 3858 - 0.417574
smf SSON_3426 Predicted Rossmann-fold nucleotide-binding proteinchromosome CDS3605236 1125 - 0.511111
sohB SSON_1871 putative proteasechromosome CDS1969931 1050 - 0.506667
spa24 SSO_P115 Spa24pSS_046 CDS105916 651 + 0.347158
spa29 SSO_P116 Spa29pSS_046 CDS106841 771 + 0.326848
spa33 SSO_P114 Spa33pSS_046 CDS105030 882 + 0.316327
spa40 SSO_P117 Spa40pSS_046 CDS107618 1029 + 0.316812
spa47 SSO_P111 Spa47pSS_046 CDS102448 1293 + 0.392111
sppA SSON_1389 protease IV, a signal peptide peptidasechromosome CDS1462846 1857 - 0.521271
spy SSON_1414 periplasmic protein related to spheroblast formationchromosome CDS1489467 462 + 0.519481
tolB SSON_0692 periplasmic proteinchromosome CDS738139 1293 + 0.535963
tolC SSON_3173 TolCchromosome CDS3331618 1488 + 0.514113
tolQ SSON_0689 membrane-spanning inner membrane proteinchromosome CDS735585 693 + 0.502164
tolR SSON_0690 putative inner membrane proteinchromosome CDS736281 429 + 0.517483
traD SSO_P190 TraD proteinpSS_046 CDS166425 2202 + 0.528156
yadK SSON_0145 putative fimbrial proteinchromosome CDS162339 597 - 0.420436
yadN SSON_0153 putative fimbrial-like proteinchromosome CDS170496 585 - 0.441026
yaiU SSON_0349 flagellar proteinchromosome CDS374335 2889 + 0.473866
yajC SSON_0384 hypothetical proteinchromosome CDS412381 333 + 0.495495
ybbJ SSON_0477 hypothetical proteinchromosome CDS507651 456 - 0.574561
ybeC SSON_0580 hypothetical proteinchromosome CDS618792 204 + 0.504902
ybgD SSON_0670 putative fimbrial-like proteinchromosome CDS712918 567 - 0.477954
ybgP SSON_0668 putative chaperonechromosome CDS709663 732 - 0.495902
ycbF SSON_0948 putative chaperonechromosome CDS1022013 738 + 0.51897
ycbQ SSON_0942 putative fimbrial-like proteinchromosome CDS1015950 552 + 0.434783
ycbR SSON_0943 putative chaperonechromosome CDS1016584 702 + 0.451567
ychE SSON_1938 putative channel proteinchromosome CDS2035845 648 - 0.481481
ydeB SSON_1599 hypothetical proteinchromosome CDS1679118 666 + 0.510511
ydeK SSON_1611 hypothetical proteinchromosome CDS1692654 2214 + 0.49187
yehC SSON_2159 putative chaperonechromosome CDS2263400 720 - 0.391667
yehD SSON_2160 putative fimbrial-like proteinchromosome CDS2264154 543 - 0.405157
yfcS SSON_2393 putative chaperonechromosome CDS2523427 645 - 0.486822
yfcU SSON_2394 PapC-like porin proteinchromosome CDS2524198 2643 - 0.510027
yggR SSON_3105 putative protein transportchromosome CDS3265817 1026 - 0.54386
ygiL SSON_3180 putative fimbrial-like proteinchromosome CDS3338921 552 + 0.443841
yhgN SSON_3674 hypothetical proteinchromosome CDS3851610 594 + 0.50505
yidC SSON_3656 60 kDa inner-membrane proteinchromosome CDS3825987 1647 + 0.538555
yigU SSON_4013 hypothetical proteinchromosome CDS4240180 777 + 0.5148
yiiO SSON_4083 Uncharacterized periplasmic proteinchromosome CDS4319859 504 + 0.5
yjaI SSON_4175 hypothetical proteinchromosome CDS4419475 567 - 0.516755
yjcP SSON_4261 putative enzymechromosome CDS4524996 1467 - 0.561691
ylcB SSON_0523 putative resistance proteinchromosome CDS556042 1383 + 0.513377
yohG SSON_2195 putative channel/filament proteinschromosome CDS2300256 1197 - 0.553049
yqiH SSON_3183 hypothetical proteinchromosome CDS3342966 759 + 0.389987
yraJ SSON_3289 putative outer membrane proteinchromosome CDS3464292 2517 + 0.473977
yraK SSON_3291 putative fimbrial proteinchromosome CDS3468293 954 + 0.474843
ytfI SSON_4400 hypothetical proteinchromosome CDS4664714 912 + 0.358553
 
Sodalis glossinidius str. morsitans, morsitans
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SG2074 putative type III secretion apparatuschromosome CDS3582687 648 - 0.583333
NA SG0415 prolipoprotein signal peptidase (SPase II)chromosome CDS735401 507 + 0.571992
NA SG0056 flagellar protein FliSchromosome CDS72218 390 - 0.533333
NA SG1868 hypothetical proteinchromosome CDS3200011 468 - 0.470085
NA SG0618 hypothetical proteinchromosome CDS1051886 1341 + 0.411633
NA SG0569 type III secretion apparatus SpaPchromosome CDS965092 681 + 0.422908
NA SG2054 flagellar motor switch protein FliNchromosome CDS3548146 399 + 0.598997
NA SG1300 putative type III secretion apparatuschromosome CDS2166415 2058 + 0.571429
NA SG2082 type III secretion apparatus SpaRchromosome CDS3588560 795 - 0.538365
NA SG0886 colicin import protein TolBchromosome CDS1445031 1293 + 0.594741
NA SG1307 putative type III secretion apparatuschromosome CDS2172520 771 + 0.544747
NA SG0565 type III secretion apparatus SpaL/InvCchromosome CDS961568 1308 + 0.529052
NA SG0025 flagellar biosynthetic protein FlhBchromosome CDS45031 1164 + 0.57646
NA SG2091 type III secretion apparatus InvGchromosome CDS3596667 1641 - 0.596587
NA SG2056 flagellar biosynthesis protein FliPchromosome CDS3549183 762 + 0.58399
NA SG1666 hypothetical proteinchromosome CDS2840377 294 - 0.540816
NA SG1306 putative type III secretion apparatuschromosome CDS2172254 270 + 0.533333
NA SG0561 type III secretion apparatus InvGchromosome CDS956104 1761 + 0.521295
NA SG0545 signal recognition particle proteinchromosome CDS944168 1362 + 0.576358
NA SG2081 type III secretion apparatuschromosome CDS3587509 1059 - 0.499528
NA SG0462 hypothetical proteinchromosome CDS797923 1236 - 0.639159
NA SG0602 putative invasinchromosome CDS1016225 2805 + 0.526203
NA SG1295 type III secretion apparatuschromosome CDS2163057 729 + 0.558299
NA SG2057 flagellar biosynthetic protein FliQchromosome CDS3549965 270 + 0.588889
NA SGP2_0018 hypothetical proteinpSG2 CDS22521 291 + 0.47079
NA SG2083 type III secretion apparatus SpaQchromosome CDS3589358 261 - 0.517241
NA SG2218 putative phospholipase Achromosome CDS3853669 948 - 0.60443
NA SG0570 type III secretion apparatus SpaQchromosome CDS965769 255 + 0.470588
NA SG0563 type III secretion apparatus InvAchromosome CDS959067 2055 + 0.457421
NA SG0266 outer membrane protein TolC precursorchromosome CDS485666 1518 - 0.533597
NA SG0026 flagellar protein FlhAchromosome CDS46175 2097 + 0.574154
NA SG2076 type III secretion apparatuschromosome CDS3583901 762 - 0.60105
NA SG1305 putative type III secretion apparatuschromosome CDS2171610 648 + 0.558642
NA SG0571 type III secretion apparatus SpaRchromosome CDS966037 780 + 0.49359
NA SG2331 hypothetical proteinchromosome CDS4006373 594 + 0.501683
NA SG0028 negative regulator of flagellin synthesis FlgMchromosome CDS49244 225 - 0.528889
NA SG0671 ATP-dependent Clp protease proteolytic subunitchromosome CDS1136637 624 + 0.520833
NA SG2429 putative preprotein translocase subunitchromosome CDS4168123 1644 - 0.559002
NA SG0113 sec-independent protein translocase protein TatBchromosome CDS191337 699 + 0.60372
NA SG0053 flagellar basal-body M-ring protein FliFchromosome CDS69523 1707 - 0.595782
NA SG1308 putative type III secretion apparatuschromosome CDS2173283 1065 + 0.505164
NA SG0043 flagellar protein FliPchromosome CDS61695 771 - 0.581064
NA SG0568 type III secretion apparatus SpaOchromosome CDS964173 915 + 0.547541
NA SG0042 flagellar protein FliQchromosome CDS61407 270 - 0.555556
NA SG0041 flagellar protein FliRchromosome CDS60611 789 - 0.590621
NA SG0281 biopolymer transport proteinchromosome CDS505646 762 + 0.574803
NA SG0045 flagellar motor switch protein FliNchromosome CDS62870 405 - 0.604938
NA SG1282 type III secretion apparatuschromosome CDS2155025 1485 + 0.503704
NA SG2088 type III secretion apparatus SpaL/InvCchromosome CDS3592573 1296 - 0.62037
NA SG2105 hypothetical proteinchromosome CDS3643473 468 + 0.559829
NA SG0049 flagellar protein FliJchromosome CDS66023 450 - 0.522222
NA SG0697 hypothetical proteinchromosome CDS1176381 378 - 0.65873
NA SG0557 type III secretion apparatuschromosome CDS953187 324 - 0.425926
NA SG1304 putative type III secretion apparatuschromosome CDS2170503 1053 + 0.646724
NA SG2090 type III secretion apparatus InvAchromosome CDS3594288 1998 - 0.558058
NA SG2179 hypothetical proteinchromosome CDS3796599 507 - 0.514793
NA SG2084 type III secretion apparatus SpaPchromosome CDS3589615 702 - 0.564103
NA SG0051 flagellar assembly protein FliHchromosome CDS67831 714 - 0.631653
NA SG0457 preprotein translocase SecAchromosome CDS791776 2709 + 0.584718
NA SG2061 negative regulator of flagellin synthesis FlgMchromosome CDS3558622 315 + 0.504762
NA SG0054 flagellar hook-basal body complex protein FliEchromosome CDS71471 324 + 0.5
NA SG0128 preprotein translocase SecE subunitchromosome CDS213818 384 + 0.552083
NA SG0572 type III secretion apparatus SpaSchromosome CDS966819 1113 + 0.442049
NA SG1635 heme exporter protein Dchromosome CDS2795220 237 - 0.628692
NA SG0050 flagellum-specific ATP synthase FliIchromosome CDS66483 1377 - 0.608569
NA SG1406 putative proteasechromosome CDS2331422 1047 + 0.578797
NA SG2085 type III secretion apparatus SpaOchromosome CDS3590306 1017 - 0.596853
NA SG0084 cell division proteinchromosome CDS130474 1515 + 0.59934
NA SG2258 preprotein translocase SecY subunitchromosome CDS3920806 1332 - 0.505255
NA SG0884 colicin import protein TolRchromosome CDS1443511 423 + 0.562648
NA SG0648 protein-export membrane protein SecDchromosome CDS1109389 1848 + 0.58171
NA SG1762 putative fimbrial biogenesis proteinchromosome CDS3017703 507 - 0.595661
NA SG2185 protein-export protein SecBchromosome CDS3801860 471 - 0.552017
NA SG0112 sec-independent protein translocase protein TatAchromosome CDS191067 267 + 0.494382
NA SG0463 putative prelipin peptidase dependent proteinchromosome CDS799621 417 - 0.606715
NA SG1788 signal peptidase Ichromosome CDS3052495 987 - 0.552178
NA SG0647 preprotein translocase YajC subunitchromosome CDS1109029 333 + 0.513514
NA SG1301 putative type III secretion ATP synthasechromosome CDS2168462 1329 + 0.635064
NA SG2063 putative flagellar biosynthetic protein FlhBchromosome CDS3561750 738 - 0.556911
NA SGP1_0008 TriJpSG1 CDS23946 948 + 0.512658
NA SG0374 protein-export protein SecGchromosome CDS671060 333 + 0.555556
NA SG0883 colicin import protein TolQchromosome CDS1442809 687 + 0.557496
NA SG0282 biopolymer transport proteinchromosome CDS506411 429 + 0.512821
NA SG1472 hypothetical proteinchromosome CDS2460569 633 - 0.627172
NA SG0556 putative type III secretion apparatuschromosome CDS952408 780 - 0.489744
NA SG0822 hypothetical proteinchromosome CDS1380805 1167 - 0.579263
NA SG0649 protein-export membrane protein SecFchromosome CDS1111246 972 + 0.565844
NA SG0114 sec-independent protein translocase protein TatCchromosome CDS192039 771 + 0.538262
NA SG2058 flagellar biosynthetic protein FliRchromosome CDS3550237 789 + 0.586819
NA SG1350 protease IVchromosome CDS2243432 1851 - 0.555916
 
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
clpP WGLp155 hypothetical proteinchromosome CDS184236 585 - 0.299145
ffh WGLp248 hypothetical proteinchromosome CDS291535 1341 + 0.224459
flhA WGLp035 hypothetical proteinchromosome CDS42014 2187 + 0.270233
flhB WGLp034 hypothetical proteinchromosome CDS40924 1158 + 0.221071
fliE WGLp061 hypothetical proteinchromosome CDS65797 330 + 0.193939
fliF WGLp060 hypothetical proteinchromosome CDS63846 1710 - 0.254971
fliH WGLp058 hypothetical proteinchromosome CDS62211 672 - 0.241071
fliI WGLp057 hypothetical proteinchromosome CDS60838 1377 - 0.300654
fliJ WGLp056 hypothetical proteinchromosome CDS60381 453 - 0.163355
fliN WGLp052 hypothetical proteinchromosome CDS57221 408 - 0.257353
fliP WGLp050 hypothetical proteinchromosome CDS56094 792 - 0.242424
fliQ WGLp049 hypothetical proteinchromosome CDS55812 273 - 0.263736
fliR WGLp048 hypothetical proteinchromosome CDS55039 777 - 0.214929
fliS WGLp062 hypothetical proteinchromosome CDS66160 393 - 0.188295
ftsY WGLp071 hypothetical proteinchromosome CDS76243 981 + 0.220183
lepB WGLp195 hypothetical proteinchromosome CDS230106 942 + 0.217622
lspA WGLp293 hypothetical proteinchromosome CDS344274 462 - 0.170996
prlA WGLp563 preprotein translocase SecYchromosome CDS634963 1350 + 0.268889
secA WGLp200 translocasechromosome CDS234013 2499 - 0.241697
secE WGLp516 hypothetical proteinchromosome CDS595775 384 + 0.21875
secG WGLp228 hypothetical proteinchromosome CDS269576 342 - 0.210526
sppA WGLp107 hypothetical proteinchromosome CDS116454 1848 + 0.252165
tolB WGLp412 hypothetical proteinchromosome CDS474635 1296 - 0.247685
tolQ WGLp415 hypothetical proteinchromosome CDS477179 708 - 0.211864
yajC WGLp255 hypothetical proteinchromosome CDS299222 342 + 0.219298
ydeB WGLp397 hypothetical proteinchromosome CDS460610 675 + 0.322963
yhgN WGLp442 hypothetical proteinchromosome CDS513658 594 - 0.205387
yidC WGLp013 hypothetical proteinchromosome CDS13661 1623 - 0.227357
 
Yersinia enterocolitica subsp. enterocolitica 8081, 8081
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
prlA YE3903 preprotein translocase SecY subunitchromosome CDS4259195 1332 - 0.468468
yscN YEP0024 probable type III secretion system ATP synthasepYVe8081 CDS18530 1320 + 0.506818
yscS YEP0029 putative type III secretion proteinpYVe8081 CDS23243 267 + 0.453184
 
Yersinia pestis Antiqua, Antiqua
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPA_0463 prepilin peptidasechromosome CDS534410 843 + 0.358244
NA YPA_3105 hypothetical proteinchromosome CDS3443769 771 + 0.35668
NA YPA_0457 hypothetical proteinchromosome CDS530274 543 + 0.3407
NA YPA_3189 hypothetical proteinchromosome CDS3533793 150 - 0.52
NA YPA_2136 frimbrial proteinchromosome CDS2393819 546 - 0.443223
NA YPA_1519 protease IVchromosome CDS1703139 1851 - 0.480281
NA YPA_4012 putative type III secretion apparatus proteinchromosome CDS4521532 711 - 0.451477
NA YPA_4135 fimbrial proteinchromosome CDS4656542 558 - 0.460573
NA YPA_0486 hypothetical proteinchromosome CDS561572 570 + 0.461404
NA YPA_4011 putative type III secretion apparatus proteinchromosome CDS4521242 294 - 0.47619
NA YPA_1849 hypothetical proteinchromosome CDS2075816 3807 - 0.531127
NA YPA_CD0017 type III secretion proteinpCD CDS14584 267 - 0.453184
NA YPA_2451 signal peptidase Ichromosome CDS2734265 999 + 0.49049
NA YPA_0458 general secretion pathway protein Ichromosome CDS530854 345 + 0.342029
NA YPA_0456 general secretion pathway protein Gchromosome CDS529832 438 + 0.394977
NA YPA_0600 TolR colicin import membrane proteinchromosome CDS685099 429 + 0.468531
NA YPA_3537 preprotein translocase SecAchromosome CDS3951008 2715 - 0.48582
NA YPA_0142 putative fimbrial proteinchromosome CDS172366 531 - 0.436911
NA YPA_2541 putaive autotransporter proteinchromosome CDS2831336 1917 + 0.47157
NA YPA_3812 putative autotransporter proteinchromosome CDS4286038 3213 - 0.490819
NA YPA_1164 flagellar biosynthetic protein FlhBchromosome CDS1315519 1161 + 0.525409
NA YPA_1538 hypothetical proteinchromosome CDS1728049 645 + 0.452713
NA YPA_0140 putative outer membrane usher proteinchromosome CDS168916 2628 - 0.471081
NA YPA_2135 putative pili chaperone proteinchromosome CDS2392901 762 - 0.412073
NA YPA_1206 flagellar M-ring proteinchromosome CDS1356396 1713 - 0.532983
NA YPA_3468 hypothetical proteinchromosome CDS3874191 489 - 0.466258
NA YPA_2579 hypothetical proteinchromosome CDS2871971 450 + 0.502222
NA YPA_CD0006 type III secretion lipoproteinpCD CDS4534 735 - 0.428571
NA YPA_CD0016 type III secretion proteinpCD CDS13802 786 - 0.428753
NA YPA_0325 hypothetical proteinchromosome CDS385470 1125 + 0.477333
NA YPA_3079 putative flagellar hook-basal body complex proteinchromosome CDS3419040 381 - 0.514436
NA YPA_3049 putative flagellar proteinchromosome CDS3391156 381 - 0.388451
NA YPA_0460 general secretion pathway protein Kchromosome CDS531796 957 + 0.314525
NA YPA_3191 putative hemolysin activator proteinchromosome CDS3544166 1689 - 0.541741
NA YPA_3102 putative type II secretion proteinchromosome CDS3440797 1287 + 0.425796
NA YPA_CD0022 Yop secretion ATP synthasepCD CDS18250 1320 - 0.508333
NA YPA_2928 putative type II secretion system proteinchromosome CDS3262409 1557 + 0.460501
NA YPA_3099 hypothetical proteinchromosome CDS3438042 855 + 0.357895
NA YPA_3190 putative adhesinchromosome CDS3534234 9888 - 0.572209
NA YPA_1021 chaperone protein PsaB precursorchromosome CDS1169479 822 + 0.377129
NA YPA_1808 oligogalacturonate lyasechromosome CDS2024890 1167 - 0.459297
NA YPA_0678 hypothetical proteinchromosome CDS774963 1095 + 0.405479
NA YPA_0138 putative chaperone proteinchromosome CDS166748 819 - 0.482295
NA YPA_1171 flagella synthesis protein FlgNchromosome CDS1323648 441 - 0.487528
NA YPA_3832 hypothetical proteinchromosome CDS4316456 1392 - 0.383621
NA YPA_1022 outer membrane usher protein PsaC precursorchromosome CDS1170384 2472 + 0.497168
NA YPA_3778 hypothetical proteinchromosome CDS4249059 594 + 0.46633
NA YPA_1813 putative chaperone proteinchromosome CDS2032457 780 - 0.441026
NA YPA_0141 putative fimbrial chaperonechromosome CDS171571 732 - 0.422131
NA YPA_1298 fimbrial usher proteinchromosome CDS1456846 2592 - 0.494985
NA YPA_0459 general secretion pathway protein Jchromosome CDS531170 618 + 0.312298
NA YPA_0246 Sec-independent protein translocase protein TatAchromosome CDS288514 267 + 0.438202
NA YPA_3975 hypothetical proteinchromosome CDS4477693 3810 + 0.531759
NA YPA_1195 flagellar biosynthetic protein FliQchromosome CDS1347497 270 - 0.522222
NA YPA_2927 putative prepilin peptidase dependent protein D precursorchromosome CDS3261970 465 + 0.447312
NA YPA_2084 putative mannose-resistant/Proteus-like fimbrial proteinchromosome CDS2337767 531 - 0.463277
NA YPA_3085 putative flagellar assembly proteinchromosome CDS3423063 273 + 0.450549
NA YPA_1987 putative hemolysin activator proteinchromosome CDS2229589 1689 - 0.53878
NA YPA_2739 putative surface-exposed proteinchromosome CDS3052323 1791 - 0.455053
NA YPA_4147 membrane proteinchromosome CDS4669743 1641 + 0.481414
NA YPA_3230 hypothetical proteinchromosome CDS3583488 1122 - 0.486631
NA YPA_3078 putative flagellar M-ring proteinchromosome CDS3417390 1641 - 0.502133
NA YPA_3831 putative hemolysin activator proteinchromosome CDS4314584 1764 - 0.459184
NA YPA_3084 putative flagellar assembly proteinchromosome CDS3422291 771 + 0.514916
NA YPA_0248 Sec-independent protein translocase protein TatCchromosome CDS289449 777 + 0.449163
NA YPA_2034 hypothetical proteinchromosome CDS2280687 1191 - 0.356843
NA YPA_3980 putative outer membrane fimbrial usher proteinchromosome CDS4488504 2379 - 0.461959
NA YPA_0199 putative lipoproteinchromosome CDS237926 528 - 0.477273
NA YPA_1814 putative fimbrial proteinchromosome CDS2033389 543 - 0.425414
NA YPA_4013 type III secretion system apparatus proteinchromosome CDS4522309 963 - 0.54621
NA YPA_2683 protein-export membrane protein SecFchromosome CDS2981703 969 - 0.474716
NA YPA_3083 flagellar switch proteinchromosome CDS3421881 414 + 0.444444
NA YPA_0022 hemolysinchromosome CDS31606 4908 - 0.445803
NA YPA_3625 preprotein translocase SecE subunitchromosome CDS4066247 384 - 0.486979
NA YPA_2983 outer membrane efflux lipoproteinchromosome CDS3319285 1407 - 0.510306
NA YPA_4069 lipoprotein signal peptidasechromosome CDS4585788 510 + 0.454902
NA YPA_CD0018 Yop secretion membrane proteinpCD CDS14852 654 - 0.43578
NA YPA_MT0069 F1 capsule anchoring proteinpMT CDS69825 2502 - 0.396083
NA YPA_1204 flagellar assembly protein FliHchromosome CDS1354698 717 - 0.548117
NA YPA_1216 flagellar protein FliSchromosome CDS1365674 399 - 0.466165
NA YPA_3103 hypothetical proteinchromosome CDS3442080 876 + 0.332192
NA YPA_1207 flagellar hook-basal body complex protein FliEchromosome CDS1358461 312 + 0.496795
NA YPA_CD0019 type III secretion proteinpCD CDS15502 924 - 0.481602
NA YPA_1202 flagellar protein FliJchromosome CDS1352735 447 - 0.478747
NA YPA_2652 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS2952228 624 - 0.461538
NA YPA_3104 hypothetical proteinchromosome CDS3442952 834 + 0.302158
NA YPA_3097 hypothetical proteinchromosome CDS3436705 423 + 0.385343
NA YPA_2107 putative heme exporter protein Dchromosome CDS2362482 303 - 0.518152
NA YPA_CD0004 type III secretion proteinpCD CDS3294 633 - 0.450237
NA YPA_1825 outer membrane usher proteinchromosome CDS2046533 2448 + 0.461193
NA YPA_1824 putative chaperone proteinchromosome CDS2045610 753 + 0.446215
NA YPA_0247 Sec-independent protein translocase protein TatBchromosome CDS288784 663 + 0.505279
NA YPA_1426 putative hemolysin activator proteinchromosome CDS1600745 1662 + 0.367629
NA YPA_3087 putative flagellar assembly proteinchromosome CDS3424115 1134 + 0.446208
NA YPA_3108 hypothetical proteinchromosome CDS3445590 1557 + 0.353886
NA YPA_3475 protein-export proteinchromosome CDS3880943 477 - 0.484277
NA YPA_4010 putative type III secretion apparatus proteinchromosome CDS4520446 795 - 0.515723
NA YPA_1296 pili assembly chaperonechromosome CDS1454744 741 - 0.442645
NA YPA_2131 fimbrial proteinchromosome CDS2388185 609 - 0.425287
NA YPA_0461 general secretion pathway protein Lchromosome CDS532736 1191 + 0.319899
NA YPA_1983 hypothetical proteinchromosome CDS2218134 2034 - 0.517207
NA YPA_4020 type III secretion system apparatus lipoproteinchromosome CDS4528803 732 - 0.490437
NA YPA_3086 putative flagellar assembly proteinchromosome CDS3423342 774 + 0.47416
NA YPA_2321 putative fimbrial biogenesis proteinchromosome CDS2600688 750 - 0.492
NA YPA_CD0012 type III secretion proteinpCD CDS8183 1824 - 0.454496
NA YPA_3173 hypothetical proteinchromosome CDS3513512 1527 + 0.521938
NA YPA_4009 putative type III secretion apparatus proteinchromosome CDS4519389 1068 - 0.4897
NA YPA_3243 preprotein translocase SecY subunitchromosome CDS3594021 1332 - 0.459459
NA YPA_2738 putative adhesinchromosome CDS3046550 5733 - 0.457701
NA YPA_0049 protein-export membrane proteinchromosome CDS65242 336 - 0.482143
NA YPA_1196 flagellar biosynthetic protein FliPchromosome CDS1347872 825 - 0.513939
NA YPA_1300 fimbrial proteinchromosome CDS1460220 531 - 0.485876
NA YPA_1810 putative chaperone proteinchromosome CDS2027804 804 - 0.482587
NA YPA_0487 putative prepilin peptidase dependent proteinchromosome CDS562132 609 + 0.486043
NA YPA_1812 putative outer membrane usher proteinchromosome CDS2029763 2613 - 0.493685
NA YPA_3979 putative fimbrial chaperonechromosome CDS4487689 744 - 0.435484
NA YPA_2684 protein-export membrane protein SecDchromosome CDS2982682 1848 - 0.487554
NA YPA_2848 signal recognition particle proteinchromosome CDS3174704 1362 + 0.483847
NA YPA_1172 negative regulator of flagellin synthesischromosome CDS1324107 303 - 0.475248
NA YPA_3201 putative autotransporter proteinchromosome CDS3557892 2985 + 0.448241
NA YPA_1198 flagellar motor switch protein FliNchromosome CDS1349229 417 - 0.494005
NA YPA_4134 hypothetical proteinchromosome CDS4654637 1830 - 0.448087
NA YPA_3094 fimbrial chaperone proteinchromosome CDS3432477 720 - 0.488889
NA YPA_2502 sec-independent protein translocase proteinchromosome CDS2792005 258 - 0.465116
NA YPA_0453 general secretion pathway protein Dchromosome CDS525194 1923 + 0.333333
NA YPA_CD0028 membrane-bound Yop proteinpCD CDS21958 2115 + 0.463357
NA YPA_4131 putative fimbrial chaperonechromosome CDS4653116 768 - 0.427083
NA YPA_0455 putative general protein secretion proteinchromosome CDS528766 1047 + 0.344795
NA YPA_3072 putative flagellum-specific ATP synthasechromosome CDS3412362 1341 - 0.580164
NA YPA_3384 hypothetical proteinchromosome CDS3768490 1659 + 0.46956
NA YPA_3093 Fimbrial proteinchromosome CDS3431346 1107 - 0.487805
NA YPA_MT0070 F1 chaperone proteinpMT CDS72351 777 - 0.405405
NA YPA_CD0015 type III secretion proteinpCD CDS12738 1065 - 0.431925
NA YPA_2685 hypothetical proteinchromosome CDS2984557 336 - 0.440476
NA YPA_0602 TolB colicin import proteinchromosome CDS686925 1293 + 0.4942
NA YPA_0599 TolQ colicin import proteinchromosome CDS684400 687 + 0.487627
NA YPA_1781 multiple antibiotic resistance proteinchromosome CDS1998446 684 + 0.438596
 
Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPO2881 putative fimbrial biogenesis proteinchromosome CDS3217115 750 - 0.492
NA YPO0302 putative outer membrane fimbrial usher proteinchromosome CDS302675 2379 + 0.461959
NA YPO1709 putative outer membrane usher proteinchromosome CDS1949919 2613 + 0.493685
NA YPO0816 general secretion pathway protein Dchromosome CDS893684 1923 - 0.332813
NA YPO0700 Fimbrial proteinchromosome CDS761672 1107 + 0.487805
NA YPO1921 probable pili assembly chaperonechromosome CDS2176407 645 - 0.424806
NA YPO1922 fimbrial proteinchromosome CDS2177144 531 - 0.485876
NA YPO1387 hypothetical proteinchromosome CDS1565168 1095 + 0.405479
NA YPO2482 hypothetical proteinchromosome CDS2784744 453 - 0.470199
NA YPO2490 putative hemolysinchromosome CDS2790123 7608 - 0.573344
NA YPO0687 hypothetical proteinchromosome CDS748875 735 - 0.365986
NA YPO0257 possible type III secretion proteinchromosome CDS258675 1572 + 0.43257
NA YPO1920 probable fimbrial usher proteinchromosome CDS2173767 2592 - 0.494985
NA YPO2486 hypothetical proteinchromosome CDS2786419 2034 - 0.517207
NA YPO4005 putative hemolysin activator proteinchromosome CDS4514110 1764 - 0.459184
NA YPO3944 putative invasinchromosome CDS4434982 9042 - 0.511944
NA YPO1697 putative chaperone proteinchromosome CDS1935923 753 - 0.446215
NA YPO1015 putative prepilin peptidase dependent proteinchromosome CDS1148051 609 + 0.486043
NA YPO2542 hypothetical proteinchromosome CDS2853651 1191 - 0.356843
NA YPO2280 putative phage-related secreted proteinchromosome CDS2560790 1245 + 0.452209
NA YPO1708 putative chaperone proteinchromosome CDS1949058 780 + 0.441026
NA YPO0587 putative autotransporter proteinchromosome CDS632564 2985 - 0.448241
NA YPO1711 putative chaperone proteinchromosome CDS1953688 804 + 0.482587
NA YPO0272 putative type III secretion apparatus proteinchromosome CDS271606 795 + 0.515723
NA YPO0813 general secretion pathway protein Gchromosome CDS890531 438 - 0.394977
NA YPO0243 hypothetical proteinchromosome CDS241590 1122 + 0.486631
NA YPO0150 putative membrane transport proteinchromosome CDS164004 1125 + 0.481778
NA YPO3878 putative fimbrial chaperonechromosome CDS4353144 732 + 0.422131
NA YPO2491 putative hemolysin activator proteinchromosome CDS2797874 1689 - 0.53878
NA YPO3950 hypothetical proteinchromosome CDS4448588 585 + 0.466667
NA YPO0146 hypothetical proteinchromosome CDS161063 942 + 0.514862
NA YPO2759 putative mannose-resistant/Proteus-like fimbrial proteinchromosome CDS3092975 531 + 0.463277
NA YPO0806 prepilin peptidasechromosome CDS885548 843 - 0.358244
NA YPO1707 putative fimbrial proteinchromosome CDS1948363 543 + 0.425414
NA YPO0271 putative type III secretion apparatus proteinchromosome CDS271311 294 + 0.47619
NA YPO0690 putative type II secretion proteinchromosome CDS751331 1287 - 0.425796
NA YPO4006 hypothetical proteinchromosome CDS4515982 1392 - 0.383621
NA YPO3084 hypothetical proteinchromosome CDS3440306 450 + 0.502222
NA YPO0810 general secretion pathway protein Jchromosome CDS889013 597 - 0.311558
NA YPO0267 flagellum-specific ATP synthasechromosome CDS267483 1338 + 0.575486
NA YPO0617 hypothetical proteinchromosome CDS678402 1527 - 0.521938
NA YPO0270 putative type III secretion apparatus proteinchromosome CDS270664 651 + 0.463902
NA YPMT1.04c putative phage tail proteinpMT1 CDS2932 2937 - 0.49983
NA YPO0684 hypothetical proteinchromosome CDS746268 1557 - 0.353886
NA YPO1388 hypothetical proteinchromosome CDS1566262 1869 + 0.387373
NA YPO3881 putative chaperone proteinchromosome CDS4357952 747 + 0.481928
NA YPO0902 putative surface protein (partial)chromosome CDS987287 1977 - 0.540718
NA YPO0269 type III secretion proteinchromosome CDS269617 921 + 0.543974
NA YPO0599 putative adhesinchromosome CDS649319 9888 + 0.57231
NA YPO0809 general secretion pathway protein Kchromosome CDS888048 957 - 0.314525
NA YPO0303 putative fimbrial chaperonechromosome CDS305125 744 + 0.435484
NA YPO3879 putative outer membrane usher proteinchromosome CDS4353903 2628 + 0.471081
NA YPO4041 putative fimbrial chaperonechromosome CDS4557884 768 - 0.427083
NA YPO4044 fimbrial proteinchromosome CDS4561310 558 - 0.460573
NA YPO1710 putative fimbrial proteinchromosome CDS1952528 1164 + 0.46134
NA YPO0309 hypothetical proteinchromosome CDS312055 3717 - 0.531612
NA YPO2045 putative hemolysinchromosome CDS2318132 4731 + 0.412598
NA YPO2940 fimbrial proteinchromosome CDS3282765 555 - 0.430631
NA YPO0273 putative type III secretion apparatus proteinchromosome CDS272390 1068 + 0.4897
NA YPO0808 general secretion pathway protein Lchromosome CDS886874 1170 - 0.317949
NA YPO4102 inner membrane protein translocase component YidCchromosome CDS4621181 1641 + 0.481414
NA YPO0683 ExbD/TolR-family transport proteinchromosome CDS745740 432 + 0.483796
NA YPO1672 hypothetical proteinchromosome CDS1902800 3807 + 0.530864
NA YPO0689 hypothetical proteinchromosome CDS750459 876 - 0.332192
NA YPO0815 general secretion pathway protein Echromosome CDS892176 1512 - 0.39418
NA YPO0940 hypothetical proteinchromosome CDS1031548 1077 - 0.481894
NA YPO3028 putative autotransporterchromosome CDS3381105 2280 + 0.442544
NA YPO3823 putative lipoproteinchromosome CDS4288961 528 + 0.477273
NA YPO0691 hypothetical proteinchromosome CDS752629 1233 - 0.334955
NA YPO0598 putative hemolysin activator proteinchromosome CDS647586 1689 + 0.541741
NA YPO3721 hemolysinchromosome CDS4158112 4908 + 0.445803
NA YPO0699 fimbrial chaperone proteinchromosome CDS760928 720 + 0.488889
NA YPO0266 secretion system apparatus proteinchromosome CDS265448 2049 + 0.520254
NA YPO3877 putative fimbrial proteinchromosome CDS4352550 531 + 0.436911
NA YPO0688 hypothetical proteinchromosome CDS749629 834 - 0.302158
NA YPO0812 general secretion pathway protein Hchromosome CDS889984 543 - 0.3407
NA YPO2181 hypothetical proteinchromosome CDS2456087 645 + 0.452713
NA YPO1918 probable pili assembly chaperonechromosome CDS2171665 741 - 0.442645
NA YPO0682 MotA/TolQ/ExbB proton channel family proteinchromosome CDS745023 714 + 0.515406
NA YPO0695 hypothetical proteinchromosome CDS756287 423 - 0.385343
NA YPO0698 outer membrane usher proteinchromosome CDS758430 2481 + 0.503426
NA YPO0263 type III secretion system apparatus lipoproteinchromosome CDS263312 732 + 0.490437
NA YPO2944 putative pili chaperone proteinchromosome CDS3287481 780 - 0.411538
NA YPO2044 putative hemolysin activator proteinchromosome CDS2316429 1674 + 0.367981
NA YPO0811 general secretion pathway protein Ichromosome CDS889602 345 - 0.342029
NA YPO1696 probable outer membrane usher proteinchromosome CDS1933288 2448 - 0.461193
NA YPO2945 frimbrial proteinchromosome CDS3288399 546 - 0.443223
caf1A YPMT1.83 putative F1 capsule anchoring proteinpMT1 CDS83368 2502 + 0.396083
caf1M YPMT1.82 putative F1 chaperone proteinpMT1 CDS82567 777 + 0.405405
ccmD YPO2737 putative heme exporter protein Dchromosome CDS3068520 303 + 0.518152
clpP YPO3157 ATP-dependent Clp protease proteolytic subunitchromosome CDS3520559 624 - 0.461538
cpxP YPO0075 hypothetical proteinchromosome CDS84482 489 + 0.466258
ffh YPO3296 signal recognition particle proteinchromosome CDS3674224 1362 - 0.483847
flgM YPO1797 negative regulator of flagellin synthesischromosome CDS2042999 303 - 0.475248
flgN YPO1796 flagella synthesis protein FlgNchromosome CDS2042540 441 - 0.487528
flhA YPO1791 flagellar biosynthesis proteinchromosome CDS2035572 2079 + 0.518037
flhB YPO1790 flagellar biosynthesis proteinchromosome CDS2034412 1161 + 0.525409
flhB YPO0706 flagellar biosynthesis proteinchromosome CDS768877 1134 - 0.446208
fliE YPO0713 putative flagellar hook-basal body complex proteinchromosome CDS774704 381 + 0.514436
fliE YPO1831 flagellar basal body proteinchromosome CDS2077374 312 + 0.496795
fliF YPO1830 flagellar M-ring proteinchromosome CDS2075309 1713 - 0.532983
fliF YPO0714 flagellar M-ring proteinchromosome CDS775094 1641 + 0.502133
fliH YPO1828 flagellar assembly proteinchromosome CDS2073611 717 - 0.548117
fliH YPO0716 flagellar assembly proteinchromosome CDS777751 720 + 0.538889
fliI YPO1827 flagellum-specific ATP synthasechromosome CDS2072194 1455 - 0.547079
fliI YPO0717 flagellum-specific ATP synthasechromosome CDS778463 1341 + 0.580164
fliJ YPO1826 flagellar proteinchromosome CDS2071648 447 - 0.478747
fliN YPO0710 flagellar switch proteinchromosome CDS771831 414 - 0.444444
fliN YPO1822 flagellar motor switch proteinchromosome CDS2068142 417 - 0.494005
fliP YPO1820 flagellar biosynthesis proteinchromosome CDS2066785 741 - 0.51417
fliP YPO0709 putative flagellar assembly proteinchromosome CDS771064 771 - 0.514916
fliQ YPO0708 putative flagellar assembly proteinchromosome CDS770790 270 - 0.451852
fliQ YPO1820a flagellar biosynthesis proteinchromosome CDS2066410 270 - 0.522222
fliR YPO1819 flagellar biosynthesis proteinchromosome CDS2065625 783 - 0.496807
fliR YPO0707 putative flagellar assembly proteinchromosome CDS770010 774 - 0.47416
fliS YPO0741 putative flagellar proteinchromosome CDS801304 381 + 0.388451
fliS YPO1840 flagellar protein FliSchromosome CDS2084555 399 - 0.466165
ftsY YPO3814 cell division proteinchromosome CDS4279876 1626 - 0.483395
hmwA YPO3247 putative adhesinchromosome CDS3614872 5733 - 0.457527
hofB YPO3426 putative type II secretion system proteinchromosome CDS3829978 1539 + 0.460689
hofC YPO3427 putative type II secretion system proteinchromosome CDS3831513 1200 + 0.455
hxuB YPO3248 putative surface-exposed proteinchromosome CDS3620645 1791 - 0.455053
ibeB YPO3481 probable outer membrane efflux lipoproteinchromosome CDS3886836 1407 - 0.509595
lepB YPO2717 signal peptidase Ichromosome CDS3045221 999 + 0.49049
lspA YPO0476 signal peptidase IIchromosome CDS507551 510 + 0.454902
marC YPO2437 multiple antibiotic resistance proteinchromosome CDS2737063 684 + 0.438596
ogl YPO1713 oligogalacturonate lyasechromosome CDS1956239 1167 + 0.459297
ppdD YPO3425 putative prepilin peptidase dependent protein D precursorchromosome CDS3829521 465 + 0.447312
psaB YPO1304 chaperone protein PsaB precursorchromosome CDS1463379 822 + 0.377129
psaC YPO1305 outer membrane usher protein PsaC precursorchromosome CDS1464242 2514 + 0.492045
secA YPO0564 translocasechromosome CDS609376 2715 + 0.48582
secB YPO0067 export protein SecBchromosome CDS77742 477 + 0.484277
secD YPO3189 protein export protein SecDchromosome CDS3550292 1848 - 0.487554
secE YPO3753 translocasechromosome CDS4209155 384 - 0.486979
secF YPO3188 protein export protein SecFchromosome CDS3549313 969 - 0.474716
secG YPO3499 protein-export membrane proteinchromosome CDS3909318 336 - 0.482143
secY YPO0229 preprotein translocase SecYchromosome CDS230847 1332 + 0.459459
shlB YPO3720 hemolysin activator proteinchromosome CDS4156357 1686 + 0.469158
sohB YPO2216 peptidase family U7 proteinchromosome CDS2489189 1047 + 0.483286
sppA YPO2162 protease IVchromosome CDS2431177 1851 - 0.480281
tatA YPO3778 Sec-independent protein translocase protein TatAchromosome CDS4240724 267 - 0.438202
tatB YPO3777 Sec-independent protein translocase protein TatBchromosome CDS4240058 663 - 0.505279
tatC YPO3776 Sec-independent protein translocase protein TatCchromosome CDS4239279 777 - 0.449163
tatE YPO2597 twin argininte translocase protein Achromosome CDS2918636 258 + 0.465116
tolB YPO1124 translocation protein TolB precursorchromosome CDS1270189 1293 + 0.4942
tolC YPO0663 outer membrane channel precursor proteinchromosome CDS722560 1404 - 0.47151
tolQ YPO1121 TolQ colicin import proteinchromosome CDS1267664 687 + 0.487627
tolR YPO1122 TolR colicin import membrane proteinchromosome CDS1268363 429 + 0.468531
yajC YPO3190 preprotein translocase subunit YajCchromosome CDS3552167 336 - 0.440476
yapC YPO2796 putaive autotransporter proteinchromosome CDS3125064 1917 + 0.47157
yapE YPO3984 putative autotransporter proteinchromosome CDS4485558 3213 - 0.490819
yapF YPO0606 putative autotransporter proteinchromosome CDS661725 2286 - 0.547244
yapH YPO1004 putative autotransporter proteinchromosome CDS1119829 11118 + 0.529232
ylpB YPCD1.59 needle complex inner membrane lipoproteinpCD1 CDS42487 735 + 0.428571
yscC YPCD1.52 outer membrane secretin precursorpCD1 CDS37749 1824 + 0.454496
yscL YPCD1.61 type III secretion proteinpCD1 CDS43796 666 + 0.448949
yscN YPCD1.40 type III secretion system ATPasepCD1 CDS28186 1320 + 0.508333
yscQ YPCD1.43 type III secretion proteinpCD1 CDS31330 924 + 0.481602
yscR YPCD1.44 needle complex export proteinpCD1 CDS32250 654 + 0.43578
yscS YPCD1.45 needle complex export proteinpCD1 CDS32905 267 + 0.453184
yscT YPCD1.46 needle complex export proteinpCD1 CDS33168 786 + 0.428753
yscU YPCD1.47 needle complex export proteinpCD1 CDS33953 1065 + 0.431925
yscV YPCD1.34c low calcium response protein DpCD1 CDS23683 2115 - 0.463357
 
Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA y3478 adhesinchromosome CDS3860464 1107 - 0.487805
NA y1846 hypothetical proteinchromosome CDS2034735 2211 + 0.581637
NA y1899 hypothetical proteinchromosome CDS2096512 714 - 0.436975
NA y0407 hypothetical proteinchromosome CDS456209 528 - 0.477273
NA y3288 hypothetical proteinchromosome CDS3617319 1926 - 0.543095
NA y0943 hypothetical proteinchromosome CDS1059114 4581 + 0.445536
NA y4060 chaperonechromosome CDS4504671 828 - 0.426329
NA y0532 type III secretion system componentchromosome CDS598437 795 + 0.515723
NA y1701 hemagglutinin-like secreted proteinchromosome CDS1883637 2046 + 0.517595
NA y3427 hypothetical proteinchromosome CDS3803738 1659 + 0.46956
NA y3482 hypothetical proteinchromosome CDS3865823 423 + 0.385343
NA y3573 hypothetical proteinchromosome CDS3956529 2286 + 0.547244
NA y1696 hemolysin activator proteinchromosome CDS1872539 1689 + 0.53878
NA y2389 pilin chaperonechromosome CDS2639747 645 + 0.424806
NA y3579 filamentous hemagglutininchromosome CDS3961333 9888 - 0.57231
NA y3470 hypothetical proteinchromosome CDS3852162 273 + 0.450549
NA y0941 membrane protein, C-terminal part of adhesin system componentchromosome CDS1056129 1791 + 0.455053
NA y0452 hypothetical proteinchromosome CDS504725 267 + 0.438202
NA y3428 adhesinchromosome CDS3805501 2001 + 0.588206
NA y0563 hypothetical proteinchromosome CDS631245 744 + 0.435484
NA y3197 L-like GSP proteinchromosome CDS3516898 1191 - 0.319899
NA y1697 hemagglutinin-like secreted proteinchromosome CDS1874239 7740 + 0.572481
NA y0704 outer membrane protein, efflux pumpchromosome CDS790524 1407 + 0.510306
NA y1344 hypothetical proteinchromosome CDS1488476 300 - 0.52
NA y3489 hypothetical proteinchromosome CDS3872070 834 + 0.302158
NA y3204 general secretion proteinchromosome CDS3523708 1923 - 0.333333
NA y0533 type III secretion system componentchromosome CDS599218 1071 + 0.489262
NA y3484 hypothetical proteinchromosome CDS3867160 855 + 0.357895
NA y0530 type III secretion system componentchromosome CDS597435 711 + 0.451477
NA y1704 hypothetical proteinchromosome CDS1886965 393 + 0.450382
NA y3429 virG proteinchromosome CDS3808157 3771 + 0.531159
NA y1858 hypothetical proteinchromosome CDS2048629 2448 - 0.461193
NA y2025 channel proteinchromosome CDS2232322 645 + 0.452713
NA y4062 hypothetical proteinchromosome CDS4506192 1830 - 0.448087
NA y3199 hypothetical proteinchromosome CDS3519037 669 - 0.312407
NA y1351 fimbrial biogenesis proteinchromosome CDS1502195 750 + 0.492
NA y0525 type III secretion system componentchromosome CDS592273 2055 + 0.519221
NA y3824 hemolysin activator protein precursorchromosome CDS4253228 1788 + 0.457494
NA y0454 hypothetical proteinchromosome CDS505660 777 + 0.449163
NA y1872 fimbrial componenetchromosome CDS2067827 1170 + 0.460684
NA y0562 hypothetical proteinchromosome CDS628795 2379 + 0.461959
NA y3580 hemolysin activator proteinchromosome CDS3971265 1689 - 0.541741
NA y3925 hypothetical proteinchromosome CDS4384144 942 + 0.514862
NA y1544 fimbrial proteinchromosome CDS1711336 609 + 0.425287
NA y0066 solute-binding periplasmic protein of ABC transpoterchromosome CDS76410 489 - 0.466258
NA y1454 hypothetical proteinchromosome CDS1611263 2280 - 0.442544
NA y4063 fimbrial-like proteinchromosome CDS4508097 645 - 0.427907
NA y3490 hypothetical proteinchromosome CDS3872887 771 + 0.35668
NA y2388 fimbrial precursorchromosome CDS2639085 570 + 0.473684
NA y2268 hemolysin activator proteinchromosome CDS2501386 1635 - 0.372477
NA y1095 hypothetical proteinchromosome CDS1235010 450 - 0.502222
NA y3575 hypothetical proteinchromosome CDS3959310 621 - 0.599034
NA y1859 pilus assembly chaperonechromosome CDS2051247 753 - 0.446215
NA y3485 hypothetical proteinchromosome CDS3868029 450 + 0.433333
NA y3486 hypothetical proteinchromosome CDS3868671 1233 + 0.334955
NA y3479 chaperonechromosome CDS3861595 720 - 0.488889
NA y0942 membrane protein, N-terminal part of adhesin system componentchromosome CDS1057960 1161 + 0.507321
NA y0351 chaperonechromosome CDS391813 756 - 0.42328
NA y3326 protein transportchromosome CDS3659626 1131 - 0.476569
NA y3823 hypothetical proteinchromosome CDS4251752 1392 + 0.383621
NA y2267 hemolysinchromosome CDS2496626 4731 - 0.412598
NA y3169 hypothetical proteinchromosome CDS3488093 609 - 0.486043
NA y3203 general secretion proteinchromosome CDS3522200 1512 - 0.39418
NA y0531 type III secretion system componentchromosome CDS598154 282 + 0.482269
NA y3195 type IV prepilin peptidasechromosome CDS3515572 915 - 0.357377
NA y3879 hypothetical proteinchromosome CDS4319911 585 - 0.466667
NA y3578 hypothetical proteinchromosome CDS3960892 150 - 0.513333
NA y0514 secretinchromosome CDS585508 1572 + 0.43257
NA y3198 hypothetical proteinchromosome CDS3518072 957 - 0.314525
NA y3493 hypothetical proteinchromosome CDS3874708 1557 + 0.353886
NA y1871 usher proteinchromosome CDS2065224 2613 + 0.493685
NA Y1099 F1 capsulepMT-1 CDS79152 2502 + 0.396083
NA Y1051 hypothetical proteinpMT-1 CDS42469 2937 + 0.49983
NA y1873 pilin chaperonechromosome CDS2068993 804 + 0.482587
NA y1869 fimbrial proteinchromosome CDS2063668 543 + 0.425414
NA y2390 outer membrane usher proteinchromosome CDS2640440 2592 + 0.494985
NA y3462 flagellar assembly proteinchromosome CDS3844754 744 - 0.537634
NA y3488 hypothetical proteinchromosome CDS3871261 813 + 0.328413
NA y0352 fimbrial protein (precursor)chromosome CDS392608 531 - 0.436911
NA y4117 inner membrane protein translocase component YidCchromosome CDS4567959 1641 + 0.481414
NA y2786 outer membrane proteinchromosome CDS3081476 1095 - 0.405479
NA y3468 hypothetical proteinchromosome CDS3850980 414 + 0.444444
NA y4061 outer membrane usher proteinchromosome CDS4505531 636 - 0.490566
NA y0453 hypothetical proteinchromosome CDS504995 663 + 0.505279
NA y3884 hypothetical proteinchromosome CDS4325060 9042 + 0.511944
NA y1847 hypothetical proteinchromosome CDS2036932 435 + 0.547126
NA y2785 hypothetical proteinchromosome CDS3079608 1869 - 0.387373
NA y3200 hypothetical proteinchromosome CDS3520008 591 - 0.338409
NA y1539 fimbrial proteinchromosome CDS1705756 555 + 0.443243
NA y0567 hypothetical proteinchromosome CDS638175 3804 - 0.532334
NA y0529 type III secretion proteinchromosome CDS596406 963 + 0.54621
NA y3465 hypothetical proteinchromosome CDS3848140 381 - 0.514436
NA y1834 hypothetical proteinchromosome CDS2018786 3138 + 0.543658
NA y3170 hypothetical proteinchromosome CDS3488692 570 - 0.461404
NA y2392 pilin chaperonechromosome CDS2644393 741 + 0.442645
caf1M Y1098 F1 capsulepMT-1 CDS78351 777 + 0.405405
ccmD y1570 heme exporter protein Dchromosome CDS1737124 303 + 0.518152
clpP y1027 ATP-dependent Clp protease proteolytic subunitchromosome CDS1156547 624 + 0.461538
cyaE y3560 hypothetical proteinchromosome CDS3940611 1527 + 0.521938
ecpD y1541 pilin chaperonechromosome CDS1706449 780 + 0.411538
ecpD y1870 pilin chaperonechromosome CDS2064363 780 + 0.441026
exbB y3495 TonB complex proteinchromosome CDS3876796 1062 - 0.520716
exbD y3494 TonB-complex proteinchromosome CDS3876361 432 - 0.483796
ffh y0892 GTP-binding export factorchromosome CDS1002978 1362 + 0.483847
fimD y0350 outer membrane usher protein FIMD precursorchromosome CDS389158 2628 - 0.471081
flgM y2513 anti-FliA factorchromosome CDS2773415 303 + 0.475248
flgN y2514 flagellar biosynthesis proteinchromosome CDS2773733 444 + 0.488739
flhA y2518 flagellar biosynthesis proteinchromosome CDS2779066 2079 - 0.518037
flhB y3472 flagellar biosynthesis proteinchromosome CDS3853214 1134 + 0.446208
flhB y2519 flagellar biosynthesis proteinchromosome CDS2781144 1161 - 0.525409
fliE y2475 flagellar basal body proteinchromosome CDS2739174 318 - 0.493711
fliF y2476 flagellar M-ring proteinchromosome CDS2739838 1713 + 0.532983
fliF y3464 flagellar M-ring proteinchromosome CDS3846490 1641 - 0.502133
fliH y2478 flagellar assembly proteinchromosome CDS2742511 738 + 0.550135
fliI y0526 flagellum-specific ATP synthasechromosome CDS594314 1338 + 0.575486
fliI y3461 flagellum-specific ATP synthasechromosome CDS3843421 1341 - 0.580164
fliI y2479 flagellum-specific ATP synthasechromosome CDS2743187 1479 + 0.54902
fliJ y2480 flagellar proteinchromosome CDS2744765 447 + 0.478747
fliN y2484 flagellar motor switch proteinchromosome CDS2748301 417 + 0.494005
fliP y3469 flagellar biosynthesis proteinchromosome CDS3851390 771 + 0.514916
fliP y2486 flagellar biosynthesis proteinchromosome CDS2749250 825 + 0.513939
fliQ y2487 flagellar biosynthesis proteinchromosome CDS2750180 270 + 0.522222
fliR y3471 flagellar biosynthetic proteinchromosome CDS3852435 780 + 0.475641
fliR y2488 flagellar biosynthesis proteinchromosome CDS2750452 783 + 0.496807
fliS y2467 flagellar protein FliSchromosome CDS2731874 399 + 0.466165
ftsY y0416 cell division membrane proteinchromosome CDS464212 1662 + 0.480144
hofB y0760 integral membrane proteinchromosome CDS847025 1557 - 0.460501
hofC y0759 integral membrane proteinchromosome CDS845829 1200 - 0.455
hofF y3202 general protein secretion proteinchromosome CDS3521012 1047 - 0.344795
hofG y3201 general protein secretion proteinchromosome CDS3520555 438 - 0.394977
hofQ y3932 transport porteinchromosome CDS4387085 1125 + 0.481778
hylA y0021 hemolysin precursorchromosome CDS29211 4965 - 0.444914
lepB y1296 leader peptidase (signal peptidase I)chromosome CDS1440151 999 + 0.49049
lspA y3699 signal peptidase IIchromosome CDS4110543 510 - 0.454902
ogl y1875 oligogalacturonide lyasechromosome CDS2071544 1167 + 0.459297
papC y3480 outer membrane usher proteinchromosome CDS3862332 2481 - 0.503023
papD y0348 pilus chaperonechromosome CDS386990 819 - 0.482295
ppdD y0761 prelipin peptidase dependent proteinchromosome CDS848556 465 - 0.447312
prlA y4010 preprotein translocase SecYchromosome CDS4451951 1332 + 0.459459
psaB y2881 pH 6 Antigen chaperone proteinchromosome CDS3183531 822 - 0.377129
psaC y2880 outer membrane usher proteinchromosome CDS3180976 2514 - 0.492045
secA y3617 translocasechromosome CDS4008449 2715 - 0.48582
secB y0074 export protein SecBchromosome CDS83162 477 - 0.484277
secD y0993 protein export protein SecDchromosome CDS1123631 1848 + 0.487554
secE y0478 translocasechromosome CDS536162 399 + 0.486216
secF y0994 protein export protein SecFchromosome CDS1125423 1035 + 0.476328
secG y0685 protein-export membrane proteinchromosome CDS769089 336 + 0.482143
smf1 y4024 hypothetical proteinchromosome CDS4462694 1122 + 0.486631
smfA y1593 fimbrial A protein precursorchromosome CDS1761515 531 + 0.463277
sohB y2057 proteasechromosome CDS2265449 1047 + 0.483286
sppA y2160 protease IV, a signal peptide peptidasechromosome CDS2387165 1851 + 0.480281
tadA y3487 secretion NTP hydrolasechromosome CDS3869915 1287 + 0.425796
tatE y1170 twin argininte translocase protein Achromosome CDS1314768 258 + 0.46124
tolB y3055 translocation protein TolB precursorchromosome CDS3363345 1293 - 0.4942
tolC y3516 outer membrane channel precursor proteinchromosome CDS3898569 1404 + 0.47151
tolQ y3058 inner membrane proteinchromosome CDS3366476 687 - 0.487627
tolR y3057 inner membrane proteinchromosome CDS3366035 429 - 0.468531
yajC y0992 preprotein translocase subunit YajCchromosome CDS1123202 402 + 0.427861
yapC y1134 autotransporterchromosome CDS1274178 1917 - 0.47157
yapE y3845 autotransporter proteinchromosome CDS4280307 3255 + 0.488786
yapH y3396 autotransporter adhesinchromosome CDS3747888 11133 + 0.528878
yfaL y3591 ATP-binding transport componentchromosome CDS3984991 2985 + 0.448241
 
Yersinia pestis Nepal516, Nepal516
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPN_3394 type III secretion apparatus proteinchromosome CDS3871457 1068 - 0.4897
NA YPN_0456 autotransporter proteinchromosome CDS550156 2985 - 0.448241
NA YPN_1257 fimbrial biogenesis proteinchromosome CDS1432099 750 + 0.492
NA YPN_3013 general secretion pathway protein Kchromosome CDS3385910 957 - 0.314525
NA YPN_3654 hypothetical proteinchromosome CDS4191472 1392 - 0.383621
NA YPN_1920 fimbrial proteinchromosome CDS2165057 1164 - 0.46134
NA YPN_0188 Sec-independent protein translocase protein TatCchromosome CDS233642 777 + 0.449163
NA YPN_3783 protein-export proteinchromosome CDS4335579 477 - 0.484277
NA YPN_3959 membrane proteinchromosome CDS4502043 1641 + 0.481414
NA YPN_0545 hypothetical proteinchromosome CDS659167 834 - 0.302158
NA YPN_3364 fimbrial chaperonechromosome CDS3839757 744 - 0.435484
NA YPN_0567 flagellar assembly proteinchromosome CDS679927 771 - 0.514916
NA YPN_1082 sec-independent protein translocase proteinchromosome CDS1244679 258 + 0.465116
NA YPN_0186 Sec-independent protein translocase protein TatAchromosome CDS232707 267 + 0.438202
NA YPN_1628 protease IVchromosome CDS1839791 1851 - 0.480281
NA YPN_3653 hemolysin activator proteinchromosome CDS4189600 1764 - 0.459184
NA YPN_2675 chaperone protein PsaB precursorchromosome CDS3019547 822 - 0.377129
NA YPN_2297 flagellar protein FliJchromosome CDS2579892 447 + 0.478747
NA YPN_0550 outer membrane secretin family proteinchromosome CDS663591 450 - 0.433333
NA YPN_0555 outer membrane usher proteinchromosome CDS667257 2481 + 0.503023
NA YPN_0019 hemolysinchromosome CDS29643 4908 - 0.445803
NA YPN_3012 general secretion pathway protein Lchromosome CDS3384736 1191 - 0.319899
NA YPN_0557 Fimbrial proteinchromosome CDS670499 1107 + 0.487805
NA YPN_0571 flagellar hook-basal body complex proteinchromosome CDS683567 381 + 0.514436
NA YPN_1436 pili chaperone proteinchromosome CDS1636390 762 + 0.412073
NA YPN_2674 outer membrane usher protein PsaC precursorchromosome CDS3016992 2472 - 0.497168
NA YPN_1205 signal peptidase Ichromosome CDS1370052 999 + 0.49049
NA YPN_0553 membrane proteinchromosome CDS665824 423 - 0.385343
NA YPN_0086 fimbrial chaperonechromosome CDS119835 732 - 0.422131
NA YPN_3406 type III secretion system apparatus lipoproteinchromosome CDS3880872 732 - 0.490437
NA YPN_3691 fimbrial proteinchromosome CDS4236896 558 - 0.460573
NA YPN_3689 outer membrane fimbrial usher porinchromosome CDS4234330 636 - 0.490566
NA YPN_0564 flagellar assembly proteinchromosome CDS677740 1134 - 0.446208
NA YPN_1891 multiple antibiotic resistance proteinchromosome CDS2135517 684 + 0.438596
NA YPN_3395 type III secretion apparatus proteinchromosome CDS3872514 795 - 0.515723
NA YPN_3839 preprotein translocase SecY subunitchromosome CDS4388075 1332 - 0.459459
NA YPN_3228 autotransporter proteinchromosome CDS3671685 11118 - 0.529232
NA YPN_0572 flagellar M-ring proteinchromosome CDS683957 1641 + 0.502133
NA YPN_3206 hypothetical proteinchromosome CDS3625298 1659 - 0.46956
NA YPN_2085 hemolysin activator proteinchromosome CDS2359727 1689 - 0.53878
NA YPN_3010 prepilin peptidasechromosome CDS3383410 843 - 0.358244
NA YPN_0480 membrane proteinchromosome CDS589936 1527 - 0.521938
NA YPN_1919 chaperone proteinchromosome CDS2164257 804 - 0.482587
NA YPN_3360 hypothetical proteinchromosome CDS3829761 3810 + 0.531759
NA YPN_3016 general secretion pathway protein Hchromosome CDS3387846 591 - 0.338409
NA YPN_3365 outer membrane fimbrial usher proteinchromosome CDS3840572 2379 - 0.461959
NA YPN_2334 flagellar biosynthetic protein FlhBchromosome CDS2616414 1161 - 0.525409
NA YPN_3018 general protein secretion proteinchromosome CDS3388850 1047 - 0.344795
NA YPN_3826 hypothetical proteinchromosome CDS4377542 1122 - 0.486631
NA YPN_3204 Outer membrane autotransporter barrelchromosome CDS3618767 3771 - 0.531159
NA YPN_2210 heme exporter protein Dchromosome CDS2496709 303 - 0.518152
NA YPN_0348 lipoprotein signal peptidasechromosome CDS426754 510 + 0.454902
NA YPN_2304 flagellar biosynthetic protein FliQchromosome CDS2585307 270 + 0.522222
NA YPN_1958 hypothetical proteinchromosome CDS2212163 3807 - 0.531127
NA YPN_1923 fimbrial proteinchromosome CDS2169843 543 - 0.425414
NA YPN_3396 type III secretion apparatus proteinchromosome CDS3873310 294 - 0.47619
NA YPN_0845 surface-exposed proteinchromosome CDS983136 1791 + 0.455053
NA YPN_3398 type III secretion system apparatus proteinchromosome CDS3874377 963 - 0.54621
NA YPN_0846 adhesin system componentchromosome CDS984967 1161 + 0.507321
NA YPN_0663 prepilin peptidase dependent protein D precursorchromosome CDS777492 465 - 0.445161
NA YPN_0568 flagellar switch proteinchromosome CDS680694 414 - 0.444444
NA YPN_2876 TolR colicin import membrane proteinchromosome CDS3235084 429 - 0.468531
NA YPN_0565 flagellar assembly proteinchromosome CDS678873 774 - 0.47416
NA YPN_0466 hemolysin activator proteinchromosome CDS565178 1689 + 0.541741
NA YPN_1934 outer membrane usher proteinchromosome CDS2183013 2448 + 0.461193
NA YPN_0544 hypothetical proteinchromosome CDS658413 771 - 0.35668
NA YPN_0606 outer membrane efflux lipoproteinchromosome CDS718880 1407 + 0.510306
NA YPN_1922 chaperone proteinchromosome CDS2168911 780 - 0.441026
NA YPN_0899 protein-export membrane protein SecFchromosome CDS1052629 969 + 0.474716
NA YPN_2874 TolB colicin import proteinchromosome CDS3232394 1293 - 0.4942
NA YPN_1045 putative autotransporter proteinchromosome CDS1204062 1917 - 0.47157
NA YPN_0551 hypothetical proteinchromosome CDS664055 855 - 0.357895
NA YPN_0897 membrane proteinchromosome CDS1050408 336 + 0.440476
NA YPN_2328 flagella synthesis protein FlgNchromosome CDS2609006 441 + 0.487528
NA YPN_0187 Sec-independent protein translocase protein TatBchromosome CDS232977 663 + 0.505279
NA YPN_0541 membrane proteinchromosome CDS655805 1557 - 0.353886
NA YPN_0546 membrane proteinchromosome CDS659997 876 - 0.332192
NA YPN_2987 hypothetical proteinchromosome CDS3356511 570 - 0.461404
NA YPN_2305 flagellar biosynthetic protein FliRchromosome CDS2585579 783 + 0.496807
NA YPN_2986 prepilin peptidase dependent proteinchromosome CDS3355912 609 - 0.486043
NA YPN_2081 hypothetical proteinchromosome CDS2348272 2034 - 0.517207
NA YPN_2283 flagellar protein FliSchromosome CDS2567001 399 + 0.466165
NA YPN_3634 autotransporter proteinchromosome CDS4161053 3213 - 0.490819
NA YPN_1647 membrane proteinchromosome CDS1864710 645 + 0.452713
NA YPN_1435 frimbrial proteinchromosome CDS1635688 546 + 0.443223
NA YPN_0430 preprotein translocase SecAchromosome CDS526660 2715 + 0.48582
NA YPN_3915 membrane transport proteinchromosome CDS4453202 1125 - 0.481778
NA YPN_0898 protein-export membrane protein SecDchromosome CDS1050771 1848 + 0.488095
NA YPN_3397 type III secretion apparatus proteinchromosome CDS3873600 711 - 0.451477
NA YPN_3690 hypothetical proteinchromosome CDS4234991 1830 - 0.448087
NA YPN_0141 lipoproteinchromosome CDS184231 528 - 0.477273
NA YPN_2301 flagellar motor switch protein FliNchromosome CDS2583428 417 + 0.494005
NA YPN_2327 negative regulator of flagellin synthesischromosome CDS2608685 303 + 0.475248
NA YPN_3017 general secretion pathway protein Gchromosome CDS3388393 438 - 0.394977
NA YPN_2292 flagellar hook-basal body complex protein FliEchromosome CDS2574301 312 - 0.496795
NA YPN_1933 chaperone proteinchromosome CDS2182073 753 + 0.446215
NA YPN_2293 flagellar M-ring proteinchromosome CDS2574965 1713 + 0.532983
NA YPN_0087 fimbrial proteinchromosome CDS120630 531 - 0.436911
NA YPN_0213 preprotein translocase SecE subunitchromosome CDS264161 384 + 0.486979
NA YPN_0566 flagellar assembly proteinchromosome CDS679653 273 - 0.450549
NA YPN_3688 fimbrial chaperonechromosome CDS4233470 768 - 0.427083
NA YPN_2590 hypothetical proteinchromosome CDS2917479 1095 - 0.405479
NA YPN_MT0065 F1 capsule anchoring proteinpMT CDS67602 2502 - 0.396083
NA YPN_2877 TolQ colicin import proteinchromosome CDS3235525 687 - 0.487627
NA YPN_3015 general secretion pathway protein Ichromosome CDS3387464 345 - 0.342029
NA YPN_0469 autotransporter proteinchromosome CDS573259 2286 - 0.547244
NA YPN_2137 hypothetical proteinchromosome CDS2415465 1191 - 0.356843
NA YPN_0933 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS1084398 624 + 0.461538
NA YPN_1005 membrane proteinchromosome CDS1164184 450 - 0.502222
NA YPN_1521 hemolysin activator proteinchromosome CDS1725065 1662 + 0.367629
NA YPN_0575 flagellum-specific ATP synthasechromosome CDS687326 1341 + 0.580164
NA YPN_3598 membrane proteinchromosome CDS4124074 594 + 0.46633
NA YPN_0083 chaperone proteinchromosome CDS115012 819 - 0.482295
NA YPN_0556 fimbrial chaperone proteinchromosome CDS669755 720 + 0.488889
NA YPN_2333 flagellar biosynthesis protein FlhAchromosome CDS2614336 2079 - 0.518037
NA YPN_2303 flagellar biosynthetic protein FliPchromosome CDS2584377 825 + 0.513939
NA YPN_3243 protein-export membrane proteinchromosome CDS3702235 336 - 0.482143
NA YPN_0801 signal recognition particle proteinchromosome CDS933914 1362 + 0.483847
NA YPN_1441 fimbrial proteinchromosome CDS1641258 609 + 0.425287
NA YPN_2187 mannose-resistant/Proteus-like fimbrial proteinchromosome CDS2471947 531 - 0.463277
NA YPN_3776 hypothetical proteinchromosome CDS4328827 489 - 0.466258
NA YPN_1917 oligogalacturonate lyasechromosome CDS2161343 1167 - 0.459297
NA YPN_0547 type II secretion proteinchromosome CDS660869 1287 - 0.425796
NA YPN_3020 general secretion pathway protein Dchromosome CDS3391546 1923 - 0.333333
NA YPN_0085 outer membrane usher proteinchromosome CDS117180 2628 - 0.471081
 
Yersinia pestis biovar Microtus str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP_3225 putative lipoproteinchromosome CDS3600092 528 - 0.477273
NA YP_3502 Predicted ATPase involved in pili biogenesis, PilT homologschromosome CDS3987909 1131 + 0.476569
NA YP_2730 hypothetical proteinchromosome CDS3030960 294 + 0.285714
NA YP_3004 hypothetical proteinchromosome CDS3342401 876 - 0.332192
NA YP_3013 Fimbrial proteinchromosome CDS3352901 1107 + 0.487805
NA YP_0840 hypothetical proteinchromosome CDS912843 450 - 0.502222
NA YP_3006 hypothetical proteinchromosome CDS3344571 1233 - 0.334955
NA YP_3436 putative virG proteinchromosome CDS3893867 3771 + 0.531159
NA YP_1803 Predicted outer membrane proteinchromosome CDS2000405 3807 + 0.531127
NA YP_1206 hypothetical proteinchromosome CDS1309785 1095 - 0.405479
NA YP_1205 hypothetical proteinchromosome CDS1307917 1869 - 0.387373
NA YP_2999 hypothetical proteinchromosome CDS3338210 1557 - 0.353886
NA YP_pMT005 phage lambda-related proteinpMT1 CDS2928 2937 - 0.49983
NA YP_0465 hypothetical proteinchromosome CDS493047 3810 - 0.531759
NA YP_3003 hypothetical proteinchromosome CDS3341571 834 - 0.302158
NA YP_3306 putative invasinchromosome CDS3693507 9327 - 0.51635
NA YP_2651 putative autotransporterchromosome CDS2939632 2280 + 0.442544
NA YP_3005 putative type II secretion proteinchromosome CDS3343273 1287 - 0.425796
NA YP_2301 hypothetical proteinchromosome CDS2554372 393 - 0.450382
NA YP_2907 putative autotransporter proteinchromosome CDS3225395 2985 - 0.447906
caf1A YP_pMT083 putative F1 capsule anchoring proteinpMT1 CDS73933 2502 - 0.396083
caf1M YP_pMT084 putative F1 chaperone proteinpMT1 CDS76459 810 - 0.408642
ccmD YP_2427 putative heme exporter protein Dchromosome CDS2697638 303 - 0.518152
clpP YP_0774 ATP-dependent Clp protease proteolytic subunitchromosome CDS834343 624 + 0.461538
cpxP YP_0075 hypothetical proteinchromosome CDS84278 489 + 0.466258
cyaE YP_2935 hypothetical proteinchromosome CDS3271234 1527 - 0.521938
ecpD1 YP_1733 putative chaperone proteinchromosome CDS1917572 780 + 0.441026
ecpD2 YP_2571 putative pili chaperone proteinchromosome CDS2846854 780 - 0.412821
exbB YP_2997 TonB complex proteinchromosome CDS3336617 1062 + 0.520716
exbD YP_2998 ExbD/TolR-family transport proteinchromosome CDS3337682 432 + 0.483796
ffh YP_0389 signal recognition particle proteinchromosome CDS414079 1362 + 0.483847
fhaB1 YP_2305 putative hemolysinchromosome CDS2556047 7737 - 0.57322
fhaB2 YP_2919 putative adhesinchromosome CDS3242151 9888 + 0.572006
fhaB3 YP_2923 Putative hemagglutinin/hemolysinchromosome CDS3253306 756 + 0.59127
fhaB4 YP_3368 hypothetical proteinchromosome CDS3774768 1392 - 0.383621
fhaC1 YP_1887 putative hemolysin activator proteinchromosome CDS2098839 1662 + 0.367629
fhaC2 YP_2306 putative hemolysin activator proteinchromosome CDS2563927 1689 - 0.539372
fhaC3 YP_2918 putative hemolysin activator proteinchromosome CDS3240418 1689 + 0.541741
fhaC4 YP_3367 putative hemolysin activator proteinchromosome CDS3772896 1764 - 0.459184
fimA1 YP_1665 fimbrial proteinchromosome CDS1833888 531 - 0.485876
fimA2 YP_1732 putative fimbrial proteinchromosome CDS1916877 543 + 0.425414
fimA3 YP_1735 putative fimbrial componenetchromosome CDS1921036 1170 + 0.460684
fimA4 YP_2572 putative fimbrial proteinchromosome CDS2847772 555 - 0.443243
fimA5 YP_2756 putative fimbrial proteinchromosome CDS3062525 609 + 0.425287
fimA6 YP_3169 putative fimbrial proteinchromosome CDS3537782 531 - 0.436911
fimA7 YP_3406 fimbrial proteinchromosome CDS3820120 645 - 0.427907
fimC1 YP_0460 putative fimbrial chaperonechromosome CDS486117 744 + 0.435484
fimC10 YP_3403 putative fimbrial chaperonechromosome CDS3816694 828 - 0.426329
fimC2 YP_1661 probable pili assembly chaperonechromosome CDS1828409 741 - 0.442645
fimC3 YP_1664 probable pili assembly chaperonechromosome CDS1833151 645 - 0.424806
fimC4 YP_1722 putative chaperone proteinchromosome CDS1904455 753 - 0.446215
fimC5 YP_1736 putative chaperone proteinchromosome CDS1922202 804 + 0.482587
fimC6 YP_3012 fimbrial chaperone proteinchromosome CDS3352157 720 + 0.488889
fimC7 YP_3165 putative pilus chaperone, PapD familychromosome CDS3532165 819 - 0.482295
fimC8 YP_3168 putative fimbrial chaperonechromosome CDS3536987 732 - 0.422131
fimD1 YP_0459 putative outer membrane fimbrial usher proteinchromosome CDS483667 2379 + 0.461538
fimD2 YP_1663 probable fimbrial usher proteinchromosome CDS1830511 2592 - 0.494985
fimD3 YP_1721 probable outer membrane usher proteinchromosome CDS1901854 2448 - 0.461193
fimD4 YP_1734 putative outer membrane usher proteinchromosome CDS1918433 2613 + 0.493685
fimD5 YP_3167 putative outer membrane usher proteinchromosome CDS3534332 2628 - 0.471081
fimD6 YP_3404 putative outer membrane usher proteinchromosome CDS3817554 636 - 0.490566
fimD7 YP_3405 hypothetical proteinchromosome CDS3818215 1830 - 0.448087
flgM YP_1596 negative regulator of flagellin synthesischromosome CDS1745745 303 + 0.475248
flgN1 YP_1597 flagella synthesis protein FlgNchromosome CDS1746063 444 + 0.488739
flhA1 YP_0420 putative type III secretion system componentchromosome CDS445176 2055 + 0.519221
flhA2 YP_1601 flagellar biosynthesis proteinchromosome CDS1751396 2079 - 0.518037
flhB1 YP_0428 putative type III secretion system componentchromosome CDS452121 1071 + 0.489262
flhB2 YP_1602 flagellar biosynthesis proteinchromosome CDS1753474 1161 - 0.525409
flhB3 YP_3018 flagellar biosynthesis proteinchromosome CDS3360079 1134 - 0.446208
fliE1 YP_1561 flagellar basal body proteinchromosome CDS1711668 372 - 0.494624
fliE2 YP_3025 flagellar hook-basal body complex protein FliEchromosome CDS3365906 381 + 0.514436
fliF1 YP_0417 type III secretion system apparatus lipoproteinchromosome CDS443046 732 + 0.490437
fliF2 YP_1562 flagellar M-ring proteinchromosome CDS1712332 1713 + 0.532983
fliF3 YP_3026 flagellar M-ring proteinchromosome CDS3366296 1641 + 0.502133
fliH1 YP_1564 flagellar assembly proteinchromosome CDS1715005 738 + 0.550135
fliH2 YP_3028 flagellar assembly proteinchromosome CDS3368929 744 + 0.537634
fliI1 YP_0421 flagellum-specific ATP synthasechromosome CDS447214 1341 + 0.574944
fliI2 YP_1565 flagellum-specific ATP synthasechromosome CDS1715681 1479 + 0.54902
fliI3 YP_3029 flagellum-specific ATP synthasechromosome CDS3369665 1341 + 0.580164
fliJ YP_1566 flagellar proteinchromosome CDS1717259 447 + 0.478747
fliN YP_1570 flagellar motor switch proteinchromosome CDS1720795 417 + 0.491607
fliN1 YP_0424 type III secretion proteinchromosome CDS449309 963 + 0.54621
fliN2 YP_3022 flagellar switch proteinchromosome CDS3363033 414 - 0.444444
fliP1 YP_0425 putative type III secretion apparatus proteinchromosome CDS450443 606 + 0.470297
fliP2 YP_1572 flagellar biosynthesis proteinchromosome CDS1721744 825 + 0.513939
fliP3 YP_3021 flagellar biosynthetic protein FliPchromosome CDS3362266 771 - 0.514916
fliQ1 YP_0426 putative type III secretion apparatus proteinchromosome CDS451045 294 + 0.47619
fliQ2 YP_1573 flagellar biosynthesis proteinchromosome CDS1722674 270 + 0.522222
fliQ3 YP_3020 Flagellar biosynthesis/type III secretory pathway proteinchromosome CDS3361992 273 - 0.450549
fliR1 YP_0427 putative type III secretion apparatus proteinchromosome CDS451340 795 + 0.515723
fliR2 YP_1574 flagellar biosynthesis proteinchromosome CDS1722946 783 + 0.496807
fliR3 YP_3019 flagellar biosynthetic protein FliRchromosome CDS3361212 774 - 0.47416
fliS1 YP_1553 flagellar protein FliSchromosome CDS1704347 399 + 0.466165
fliS2 YP_3050 flagellar protein FliSchromosome CDS3388666 381 + 0.388451
ftsA1 YP_0147 Predicted ATPase of the HSP70 class involved in cell divisionchromosome CDS161789 942 + 0.514862
ftsY YP_3235 cell division proteinchromosome CDS3608095 1644 + 0.481752
gspD1 YP_0152 putative membrane transport proteinchromosome CDS164730 1125 + 0.481778
gspD2 YP_0410 possible type III secretion proteinchromosome CDS438389 1572 + 0.43257
gspD3 YP_2840 putative general secretion proteinchromosome CDS3153800 1923 + 0.333333
gspE YP_2841 general secretion pathway protein Echromosome CDS3155719 1512 + 0.39418
gspK YP_2847 general secretion pathway protein Kchromosome CDS3160403 957 + 0.314525
gspL YP_2848 general secretion pathway protein Lchromosome CDS3161343 1191 + 0.319899
hmwA YP_0685 putative adhesinchromosome CDS737714 5733 + 0.457701
hofB YP_0258 putative integral membrane proteinchromosome CDS259708 1557 - 0.460501
hofC YP_0257 putative type II secretion system proteinchromosome CDS258512 1200 - 0.455
hofF YP_2842 putative general protein secretion proteinchromosome CDS3157211 1209 + 0.339123
hofG1 YP_2843 general secretion pathway protein Gchromosome CDS3158439 438 + 0.394977
hofG2 YP_2844 General secretory pathway proteins G and H and related periplasmic/secreted proteinschromosome CDS3158833 591 + 0.338409
hofG3 YP_2845 general secretion pathway protein Ichromosome CDS3159461 345 + 0.342029
hofG4 YP_2846 general secretion pathway protein Jchromosome CDS3159777 618 + 0.312298
hofG5 YP_2877 putative prepilin peptidase dependent proteinchromosome CDS3191477 570 + 0.461404
hofG6 YP_2878 putative prepilin peptidase dependent proteinchromosome CDS3192037 609 + 0.486043
hxuB YP_0684 putative surface-exposed proteinchromosome CDS735883 1791 + 0.455053
hylA YP_3083 hemolysinchromosome CDS3418721 4965 + 0.444914
ibeB YP_0602 probable outer membrane efflux lipoproteinchromosome CDS645479 1407 + 0.510306
lepB YP_2521 signal peptidase Ichromosome CDS2792816 999 + 0.49049
lspA YP_3704 signal peptidase IIchromosome CDS4216979 510 - 0.454902
marC1 YP_1978 hypothetical proteinchromosome CDS2201955 645 + 0.452713
marC2 YP_2225 multiple antibiotic resistance proteinchromosome CDS2473592 684 + 0.438596
marC3 YP_3312 hypothetical proteinchromosome CDS3707398 585 + 0.466667
nrfG5 YP_3002 TPR-repeat-containing proteinschromosome CDS3340817 771 - 0.35668
ogl YP_1738 oligogalacturonate lyasechromosome CDS1924753 1167 + 0.459297
pilF YP_2747 putative fimbrial biogenesis proteinchromosome CDS3048096 750 - 0.492
ppdD YP_0259 putative prepilin peptidase dependent protein D precursorchromosome CDS261239 465 - 0.447312
pppA1 YP_2850 putative type IV prepilin peptidasechromosome CDS3162945 915 + 0.357377
pppA2 YP_3009 hypothetical proteinchromosome CDS3348229 423 - 0.385343
psaB YP_1288 chaperone protein PsaB precursorchromosome CDS1409882 822 - 0.377129
psaC YP_1287 outer membrane usher protein PsaC precursorchromosome CDS1407327 2514 - 0.492045
secA YP_3620 translocasechromosome CDS4115621 2715 - 0.48582
secB YP_0067 export protein SecBchromosome CDS77538 477 + 0.484277
secD1 YP_0742 protein export protein SecDchromosome CDS803386 1848 + 0.487554
secE YP_3116 translocasechromosome CDS3469127 399 - 0.486216
secF YP_0743 protein export protein SecFchromosome CDS805178 1035 + 0.476328
secG YP_0584 protein-export membrane proteinchromosome CDS624044 336 + 0.482143
secY YP_0227 preprotein translocase SecYchromosome CDS229559 1332 + 0.459459
smf YP_0241 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS240302 1122 + 0.486631
smfA YP_2404 putative mannose-resistant/Proteus-like fimbrialproteinchromosome CDS2672900 531 - 0.463277
sohB YP_2013 peptidase family U7 proteinchromosome CDS2235047 1047 + 0.483286
sppA YP_1962 protease IVchromosome CDS2180303 1851 - 0.480821
tatA YP_3271 Sec-independent protein translocase protein TatAchromosome CDS3648555 267 + 0.438202
tatB YP_3272 Sec-independent protein translocase protein TatBchromosome CDS3648825 663 + 0.505279
tatC YP_3273 Sec-independent protein translocase protein TatCchromosome CDS3649490 777 + 0.449163
tatE YP_1117 twin argininte translocase protein Achromosome CDS1200054 258 - 0.465116
tolB YP_1032 translocation protein TolB precursorchromosome CDS1111424 1293 - 0.4942
tolC YP_2978 outer membrane channel precursor proteinchromosome CDS3314502 1404 - 0.47151
tolQ YP_1035 TolQ colicin import proteinchromosome CDS1114579 687 - 0.487627
tolR YP_1034 TolR colicin import membrane proteinchromosome CDS1114138 429 - 0.468531
virB10 YP_pCRY15 type IV secretory pathway VirB10 componentpCRY CDS11254 1251 + 0.564349
virB11 YP_pCRY16 type IV secretory pathway VirB11 componentpCRY CDS12494 1026 + 0.473684
virB4 YP_pCRY09 type IV secretory pathway VirB4 componentpCRY CDS4670 2685 + 0.52365
virB6 YP_pCRY12 type IV secretory pathway VirB6 componentpCRY CDS8328 1074 + 0.460894
virB8 YP_pCRY13 type IV secretion system VirB8 componentpCRY CDS9622 684 + 0.538012
virB9 YP_pCRY14 type IV secretory pathway VirB9 componentpCRY CDS10302 909 + 0.564356
yajC YP_0741 preprotein translocase subunit YajCchromosome CDS802957 402 + 0.427861
yapC YP_1153 putaive autotransporter proteinchromosome CDS1238299 1917 + 0.47157
yapE YP_3347 putative autotransporter proteinchromosome CDS3744350 3255 - 0.488786
yapF YP_2924 putative autotransporter proteinchromosome CDS3254557 2286 - 0.546807
yapH YP_3415 putative autotransporter proteinchromosome CDS3835208 11133 + 0.528788
yidC YP_4009 inner membrane protein translocase component YidCchromosome CDS4562278 1641 + 0.481414
yscC YP_pCD31 putative type III secretion protein YscCpCD1 CDS21303 1824 - 0.454496
yscJ YP_pCD24 putative type III secretion lipoprotein YscJpCD1 CDS17654 735 - 0.428571
yscL YP_pCD22 type III secretion proteinpCD1 CDS16414 666 - 0.447447
yscN YP_pCD43 type III secretion system ATPasepCD1 CDS31370 1320 - 0.508333
yscQ YP_pCD40 type III secretion proteinpCD1 CDS28622 924 - 0.481602
yscR YP_pCD39 putative Yop secretion membrane protein YscRpCD1 CDS27972 654 - 0.43578
yscS YP_pCD38 type III secretion protein yscS YscSpCD1 CDS27704 267 - 0.453184
yscT YP_pCD37 putative type III secretion protein YscTpCD1 CDS26922 786 - 0.428753
yscU YP_pCD36 putative type III secretion protein YscUpCD1 CDS25858 1065 - 0.431925
yscV YP_pCD49 putative membrane-bound Yop protein YscVpCD1 CDS35078 2115 + 0.463357
 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pYV0070 yscQ; putative type III secretion proteinpYV CDS48587 924 + 0.481602
NA pYptb0018 hypothetical proteinpYptb32953 CDS14519 1251 + 0.440448
NA pYV0088 yscL; putative type III secretion proteinpYV CDS61086 633 + 0.450237
NA pYV0073 yscT; putative type III secretion proteinpYV CDS50425 786 + 0.428753
NA pYV0079 yscC; putative type III secretion proteinpYV CDS55006 1824 + 0.453947
NA pYV0067 putative Yops secretion ATP synthasepYV CDS45443 1320 + 0.508333
NA pYV0060 lcrD, yscV; putative membrane-bound Yop proteinpYV CDS40940 2115 - 0.46383
NA pYV0074 yscU; putative type III secretion proteinpYV CDS51210 1065 + 0.431925
NA pYV0072 yscS; putative type III secretion proteinpYV CDS50162 267 + 0.453184
NA pYV0086 yscJ, ylpB; putative type III secretion lipoproteinpYV CDS59744 735 + 0.428571
NA pYV0071 yscR; putative Yop secretion membrane proteinpYV CDS49507 654 + 0.43578
NA pYV0013 hypothetical proteinpYV CDS9103 1299 - 0.43341
triC pYptb0006 TriC proteinpYptb32953 CDS3506 2748 + 0.483624
triE pYptb0011 TriE proteinpYptb32953 CDS7975 1041 + 0.530259
triG pYptb0012 TriG proteinpYptb32953 CDS9186 684 + 0.423977
triH pYptb0013 TriH proteinpYptb32953 CDS9869 948 + 0.489451
triI pYptb0014 TriI proteinpYptb32953 CDS10813 1233 + 0.525547
triJ pYptb0015 TriJ proteinpYptb32953 CDS12262 1014 + 0.475345
 
Yersinia pseudotuberculosis IP 32953, IP32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPTB2528 putative hemolysin activator/exporter, TPS familychromosome CDS2990905 1689 - 0.537004
NA YPTB2527 putative hemolysinchromosome CDS2983155 7653 - 0.574938
NA YPTB1921 fimbrial proteinchromosome CDS2255416 531 - 0.485876
NA YPTB2385 probable outer membrane usher proteinchromosome CDS2811932 2448 + 0.461193
NA YPTB0312 possible type III secretion protein EscC/SpiA, outer membrane porechromosome CDS380872 1572 + 0.43257
NA YPTB3363 outer membrane fimbrial usher porinchromosome CDS3994683 2481 - 0.503829
NA YPTB3383 possible MotA/TolQ/ExbB proton channel family proteinchromosome CDS4015577 1038 - 0.520231
NA YPTB0328 putative type III secretion apparatus protein EscS/SsaS/YscSchromosome CDS393548 294 + 0.47619
NA YPTB1917 probable pili assembly chaperonechromosome CDS2249850 741 - 0.441296
NA YPTB3055 Prepilin peptidasechromosome CDS3606313 843 - 0.357058
NA YPTB3376 putative integral membrane protein.chromosome CDS4009979 876 + 0.334475
NA YPTB0329 putative type III secretion apparatus protein EscT/SsaT/YscTchromosome CDS393843 795 + 0.515723
NA YPTB2104 hypothetical proteinchromosome CDS2481630 645 + 0.454264
NA YPTB3361 Fimbrial proteinchromosome CDS3992818 1104 - 0.491848
NA YPTB2394 putative surface proteinchromosome CDS2823649 2643 - 0.577374
NA YPTB0359 putative outer membrane fimbrial usher proteinchromosome CDS424212 2379 + 0.46322
NA YPTB3375 putative type IV secretion ATPasechromosome CDS4008696 1287 + 0.422688
NA YPTB3286 putative autotranporter secreted proteinchromosome CDS3879789 3765 - 0.534661
NA YPTB3285 putative autotransporter secreted proteinchromosome CDS3875363 3771 - 0.530894
NA YPTB1920 probable pili assembly chaperonechromosome CDS2254592 732 - 0.423497
NA YPTB3844 hemagglutinin/hemolysin-related proteinchromosome CDS4591809 1392 - 0.382902
NA YPTB2667 fimbrial proteinchromosome CDS3149364 609 - 0.433498
NA YPTB1412 hypothetical proteinchromosome CDS1688784 1095 + 0.403653
NA YPTB0319 type III secretion system apparatus lipoprotein, EscJ/SsaJchromosome CDS385529 732 + 0.493169
NA YPTB0327 putative type III secretion apparatus protein, YscR/EscRchromosome CDS392901 651 + 0.463902
NA YPTB0323 flagellum-specific ATP synthasechromosome CDS389720 1338 + 0.574738
NA YPTB3381 putative membrane protein.chromosome CDS4013489 1557 + 0.355812
NA YPTB3755 hypothetical proteinchromosome CDS4454443 897 - 0.521739
NA YPTB1919 putative outer membrane fimbrial usher porinchromosome CDS2251952 2592 - 0.494985
NA YPTB3374 hypothetical proteinchromosome CDS4007557 1128 + 0.335993
NA YPTB2843 putative fimbrial biogenesis proteinchromosome CDS3358797 750 - 0.489333
NA YPTB3370 hypothetical proteinchromosome CDS4004573 423 + 0.399527
NA YPTB1413 hypothetical proteinchromosome CDS1689878 1869 + 0.386303
NA YPTB3031 hypothetical proteinchromosome CDS3579414 570 - 0.461404
NA YPTB3378 hypothetical proteinchromosome CDS4011668 771 + 0.35668
NA YPTB3664 hypothetical proteinchromosome CDS4376472 1122 - 0.484848
NA YPTB3460 possible adhesin/hemolysinchromosome CDS4109942 10137 - 0.569892
NA YPTB3461 putative hemolysin activator/exporterchromosome CDS4120123 1689 - 0.544109
NA YPTB2668 putative outer membrane fimbrial usher porinchromosome CDS3149957 2712 - 0.456121
NA YPTB1572 putative invasinchromosome CDS1895039 3228 - 0.45632
NA YPTB3362 fimbrial chaperone proteinchromosome CDS3993946 720 - 0.490278
NA YPTB3843 putative TPS family hemolysin activator/secretion proteinchromosome CDS4589937 1764 - 0.462018
NA YPTB3789 possible Bacterial Ig-like domain (group 1)chromosome CDS4504366 16872 - 0.556603
NA YPTB2669 putative pili chaperone proteinchromosome CDS3152757 762 - 0.412073
NA YPTB3751 putative outer membrane secretin family proteinchromosome CDS4451304 1368 - 0.481725
NA YPTB2370 putative chaperone proteinchromosome CDS2793179 804 - 0.482587
NA YPTB3377 hypothetical proteinchromosome CDS4010851 834 + 0.300959
NA YPTB3212 putative outer membrane protein secreting MTB familychromosome CDS3777406 1125 - 0.477333
NA YPTB0365 putative autotransporter proteinchromosome CDS433591 3795 - 0.527536
NA YPTB2670 frimbrial proteinchromosome CDS3153675 546 - 0.446886
NA YPTB0360 putative fimbrial chaperonechromosome CDS426662 744 + 0.43414
NA YPTB2374 putative fimbrial proteinchromosome CDS2798850 543 - 0.425414
NA YPTB3030 putative prepilin peptidase dependent proteinchromosome CDS3578815 609 - 0.486043
NA YPTB0326 type III secretion proteinchromosome CDS391854 921 + 0.546145
NA YPTB2746 putative pertactin family virulence factor/autotransporterchromosome CDS3245878 2211 + 0.448213
NA YPTB3061 general secretion pathway protein Hchromosome CDS3610749 543 - 0.346225
NA YPTB2828 hypothetical proteinchromosome CDS3342915 396 + 0.242424
NA YPTB3438 possible Outer Membrane Factor (OMF) Family efflux porinchromosome CDS4079197 1527 + 0.521284
NA YPTB3652 hemolysinchromosome CDS4350725 4908 + 0.446822
NA YPTB3894 putative fimbrial chaperonechromosome CDS4647756 768 - 0.427083
NA YPTB3382 ExbD/TolR-family transport proteinchromosome CDS4015142 426 - 0.485915
NA YPTB2371 putative fimbrial proteinchromosome CDS2793979 1164 - 0.462199
NA YPTB0322 putative type-III secretion protein, EscV/SsaV/LcrDchromosome CDS387685 2049 + 0.521718
NA YPTB0160 putative fimbrial proteinchromosome CDS190727 531 - 0.431262
NA YPTB0156 putative chaperone proteinchromosome CDS185085 747 - 0.481928
NA YPTB1024 hypothetical proteinchromosome CDS1231492 450 - 0.506667
NA YPTB0159 putative fimbrial chaperonechromosome CDS189932 732 - 0.422131
NA YPTB0158 putative outer membrane fimbrial usher porinchromosome CDS187253 2652 - 0.470965
NA YPTB0330 putative type III secretion apparatus protein EscU/SsaU/YscUchromosome CDS394627 1068 + 0.487828
NA YPTB3896 fimbrial proteinchromosome CDS4651190 558 - 0.460573
NA YPTB1061 putative pertactin family virulence factor/autotransporterchromosome CDS1268552 1917 - 0.472613
HlyA YPTB2028 putative hemolysin HlyAchromosome CDS2387168 4896 + 0.412377
HlyB YPTB2027 hemolysin activator protein HlyB, TPS secretion familychromosome CDS2385477 1662 + 0.383273
YapG YPTB3471 putative pertactin family virulence factor/autotransporterchromosome CDS4133871 2994 + 0.447896
ccmD YPTB2646 putative heme exporter protein Dchromosome CDS3125540 351 - 0.501424
clpP YPTB0959 ATP-dependent Clp protease proteolytic subunitchromosome CDS1152879 624 + 0.461538
cpxP YPTB0071 hypothetical proteinchromosome CDS82113 489 + 0.464213
drcB YPTB0212 putative lipoproteinchromosome CDS255304 528 - 0.477273
ecpD YPTB2373 putative chaperone proteinchromosome CDS2797833 780 - 0.441026
ffh YPTB0833 4.5S-RNP protein (ffh), GTP binding export factor, part of signal recognition particle with 4.5S RNAchromosome CDS1000719 1362 + 0.483113
flgM YPTB1670 negative regulator of flagellin synthesischromosome CDS2024328 303 - 0.475248
flgN YPTB1669 flagella synthesis protein FlgNchromosome CDS2023869 441 - 0.485261
flhA YPTB3357 putative flagellar biosynthesis/export membrane protein flhA, fhiA.chromosome CDS3986716 2097 + 0.450167
flhA YPTB1666 flagellar biosynthesis proteinchromosome CDS2017622 2079 + 0.519
flhB YPTB3356 flagellar biosynthesis proteinchromosome CDS3985596 1134 + 0.447972
flhB YPTB1665 flagellar biosynthesis proteinchromosome CDS2016462 1161 + 0.521102
fliE YPTB3349 possible flagellar hook-basal body complex proteinchromosome CDS3980522 381 - 0.51706
fliE YPTB1704 flagellar basal body proteinchromosome CDS2058868 312 + 0.49359
fliF YPTB1703 flagellar M-ring proteinchromosome CDS2056803 1713 - 0.534151
fliF YPTB3348 flagellar M-ring proteinchromosome CDS3978872 1641 - 0.502742
fliH YPTB3346 flagellar assembly proteinchromosome CDS3977136 717 - 0.542538
fliH YPTB1701 flagellar assembly proteinchromosome CDS2055105 717 - 0.546722
fliI YPTB3345 flagellum-specific ATP synthasechromosome CDS3975803 1341 - 0.57569
fliI YPTB1700 flagellum-specific ATP synthasechromosome CDS2053705 1401 - 0.552463
fliJ YPTB1699 flagellar proteinchromosome CDS2053183 447 - 0.478747
fliN YPTB1695 flagellar motor switch proteinchromosome CDS2049658 417 - 0.496403
fliN YPTB3352 Flagellar switch proteinchromosome CDS3983362 414 + 0.444444
fliP YPTB1693 flagellar biosynthesis proteinchromosome CDS2048241 825 - 0.513939
fliP YPTB3353 putative flagellar assembly/export protein, fliPchromosome CDS3983772 771 + 0.516213
fliQ YPTB3354 putative flagellar assembly/export protein, fliQchromosome CDS3984544 273 + 0.450549
fliQ YPTB1692 flagellar biosynthesis proteinchromosome CDS2047866 270 - 0.518519
fliR YPTB1691 flagellar biosynthesis proteinchromosome CDS2047081 783 - 0.496807
fliR YPTB3355 putative flagellar assembly/export protein, fliRchromosome CDS3984823 774 + 0.47416
fliS YPTB3324 putative flagellar proteinchromosome CDS3957802 384 - 0.388021
fliS YPTB1712 flagellar protein FliSchromosome CDS2066143 399 - 0.471178
ftsY YPTB0221 cell division proteinchromosome CDS263262 1725 + 0.474783
gspD YPTB3065 general secretion pathway protein Dchromosome CDS3614450 1923 - 0.334373
gspE YPTB3064 general secretion pathway protein Echromosome CDS3612942 1512 - 0.39418
gspF YPTB3063 putative general secretion pathway protein F.chromosome CDS3611753 1203 - 0.339152
gspG YPTB3062 general secretion pathway protein Gchromosome CDS3611296 438 - 0.394977
gspI YPTB3060 General secretion pathway protein Ichromosome CDS3610367 345 - 0.330435
gspJ YPTB3059 putative general secretion pathway protein Jchromosome CDS3609778 597 - 0.319933
gspK YPTB3058 General secretion pathway protein Kchromosome CDS3608813 957 - 0.310345
gspL YPTB3057 General secretion pathway protein Lchromosome CDS3607639 1191 - 0.319899
hofB YPTB0706 putative outer membrane protein export (MTB) sytem, hofB subunitchromosome CDS845082 1539 - 0.461339
hofC YPTB0705 putative outer membrane protein export (MTB) sytem, hofC subunitchromosome CDS843886 1200 - 0.456667
htrE YPTB2372 putative outer membrane fimbrial usher porinchromosome CDS2795139 2613 - 0.493685
ibeB YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF familychromosome CDS582446 1407 + 0.511016
lepB YPTB2891 signal peptidase Ichromosome CDS3421277 999 - 0.489489
lspA YPTB0618 signal peptidase IIchromosome CDS734861 510 + 0.456863
marC YPTB2345 multiple antibiotic resistance proteinchromosome CDS2767066 684 + 0.44152
ogl YPTB2368 oligogalacturonate lyasechromosome CDS2790225 1167 - 0.457584
ppdD YPTB0707 putative major component of type IV pilin, prelipin peptidase dependent proteinchromosome CDS846613 465 - 0.447312
psaB YPTB1335 chaperone protein PsaB precursorchromosome CDS1589475 822 + 0.377129
psaC YPTB1336 outer membrane usher protein PsaC precursorchromosome CDS1590380 2472 + 0.497168
rcpA YPTB3372 putative outer membrane secretin family proteinchromosome CDS4005940 1320 + 0.377273
rscA YPTB0880 putative adhesin; involved in the adherence of host cellschromosome CDS1057177 6171 + 0.467995
rscB YPTB0879 TPS secretion family, afimbrail adhesion, hemopexin utilizationchromosome CDS1055346 1791 + 0.45282
secA YPTB0697 translocasechromosome CDS834683 2715 + 0.485451
secB YPTB0063 export protein SecBchromosome CDS75354 477 + 0.484277
secB YPTB0277 translocasechromosome CDS332253 384 + 0.486979
secD YPTB0930 protein export protein SecDchromosome CDS1123343 1848 + 0.488095
secF YPTB0931 protein export protein SecFchromosome CDS1125201 969 + 0.47678
secG YPTB0477 protein-export membrane proteinchromosome CDS562458 336 + 0.482143
secY YPTB3678 preprotein translocase SecYchromosome CDS4387005 1332 - 0.459459
smfA YPTB2624 putative mannose-resistant/Proteus-like fimbrial proteinchromosome CDS3100626 531 - 0.46516
smfA YPTB3364 putative mannose-resistant Proteus-like fimbrial proteinchromosome CDS3997470 531 - 0.474576
sohB YPTB2138 peptidase family U7 proteinchromosome CDS2513405 1047 + 0.483286
sppA YPTB2088 protease IVchromosome CDS2458473 1851 - 0.479741
tatA YPTB0258 Sec-independent protein translocase protein TatAchromosome CDS305426 267 + 0.438202
tatB YPTB0259 Sec-independent protein translocase protein TatBchromosome CDS305696 663 + 0.505279
tatC YPTB0260 Sec-independent protein translocase protein TatCchromosome CDS306361 777 + 0.447876
tatE YPTB1090 twin argininte translocase protein Achromosome CDS1307565 258 + 0.465116
tolB YPTB1159 translocation protein TolB precursorchromosome CDS1384130 1293 + 0.4942
tolC YPTB3400 outer membrane channel precursor proteinchromosome CDS4037356 1395 + 0.469534
tolQ YPTB1156 TolQ colicin import proteinchromosome CDS1381605 687 + 0.487627
tolR YPTB1157 TolR colicin import membrane proteinchromosome CDS1382304 429 + 0.468531
yajC YPTB0929 preprotein translocase subunit YajCchromosome CDS1122980 336 + 0.440476
yapB2 YPTB2849 putative pertactin family virulence factor/autotransporterchromosome CDS3369957 3366 + 0.499109
yapE YPTB3824 putative pertactin family virulence factor/autotransporterchromosome CDS4561332 3213 - 0.491441
yapF YPTB3449 putative autotransporter proteinchromosome CDS4095115 2286 + 0.545932
yapH YPTB3303 putative pertactin family virulence factor/autotransporterchromosome CDS3925028 11121 - 0.531427
yhgN YPTB3791 possible MarC family transporterchromosome CDS4523987 594 + 0.468013
yidC YPTB3948 inner membrane protein translocase component YidCchromosome CDS4712105 1641 + 0.482023
yidR YPTB3902 hypothetical proteinchromosome CDS4657611 1302 + 0.542243
yqiG YPTB3895 outer membrane fimbrial usher porinchromosome CDS4648616 2499 - 0.458183