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2024-05-23 16:28:25

Gene list

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COG category: Defense mechanisms

Number of genes found: 1270

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Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
bacA BU062 bacitracin resistance proteinchromosome CDS67542 798 - 0.226817
mdl BU479 multidrug resistance-like ATP-binding protein Mdlchromosome CDS527423 1770 + 0.284181
mdlB BU480 multidrug resistance-like ATP-binding protein MdlBchromosome CDS529164 1773 + 0.259447
ycfV BU296 hypothetical ABC transporter ATP-binding protein YcfVchromosome CDS326753 687 + 0.247453
 
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
bacA bbp058 bacitracin resistance proteinchromosome CDS65973 807 - 0.236679
mdlA bbp423 putative ABC transporterchromosome CDS495885 1740 + 0.262069
mdlB bbp424 putative ATP transporterchromosome CDS497653 1737 + 0.239493
norM bbp106 multidrug resistance protein NorMchromosome CDS116861 1356 - 0.253687
 
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
bacA BUsg059 bacitracin resistance proteinchromosome CDS67690 795 - 0.226415
mdlA BUsg464 multidrug resistance-like ATP-binding protein Mdlchromosome CDS528591 1746 + 0.268614
mdlB BUsg465 multidrug resistance-like ATP-binding protein MdlBchromosome CDS530360 1743 + 0.262765
ycfV BUsg285 hypothetical ABC transporter ATP-binding proteinchromosome CDS326772 690 + 0.249275
 
Candidatus Blochmannia floridanus
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
lolD Bfl395 ABC transporter ATP-binding subunitchromosome CDS437706 708 - 0.281073
msbA Bfl379 probable transport ATP-binding protein MsbAchromosome CDS414751 1752 - 0.294521
 
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
bacA BPEN_063 bacitracin resistance proteinchromosome CDS74475 885 + 0.289266
lolD BPEN_407 transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind)chromosome CDS483847 702 - 0.311966
msbA BPEN_390 lipid transport proteinchromosome CDS457309 1755 - 0.335613
 
Enterobacteria phage Fels-2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STM2754 putative hexulose 6 phosphate synthasechromosome CDS2892409 1203 + 0.367415
NA STM2901 putative cytoplasmic proteinchromosome CDS3045263 450 + 0.428889
NA STM0351 putative cation efflux system proteinchromosome CDS393893 3168 - 0.566919
NA STM2691 putative ABC transporter transmembrane regionchromosome CDS2840524 2181 + 0.568547
NA STM4262 putative ABC-type bacteriocin/lantibiotic exporterchromosome CDS4499193 2067 + 0.353169
NA STM4495 putative type II restriction enzyme methylase subunitchromosome CDS4743262 3678 - 0.457314
NA STM0159 putative restriction endonucleasechromosome CDS188515 843 - 0.310795
NA STM2478 hypothetical proteinchromosome CDS2587868 1299 + 0.460354
acrB STM0475 acridine efflux pumpchromosome CDS529247 3150 - 0.54381
acrD STM2481 aminoglycoside/multidrug efflux pumpchromosome CDS2593647 3114 + 0.553629
acrF STM3391 multidrug transport proteinchromosome CDS3562273 3114 + 0.508671
ampD STM0146 N-acetyl-anhydromuramyl-L-alanine amidasechromosome CDS169354 564 + 0.551418
ampE STM0147 putative beta lactamase regulatorchromosome CDS169914 855 + 0.556725
ampH STM0375 penicillin-binding proteinchromosome CDS428855 1131 - 0.532272
creD STM4590 colicin E2 tolerance proteinchromosome CDS4846404 1350 + 0.534815
dinF STM4238 DNA-damage-inducible protein Fchromosome CDS4460035 1326 + 0.570136
emrA STM2814 multidrug resistance secretion proteinchromosome CDS2961778 1173 + 0.544757
fhlA STM2859 formate hydrogen-lyase transcriptional activatorchromosome CDS3003702 2079 + 0.549303
hsdM STM4525 DNA methylase Mchromosome CDS4779012 1590 - 0.575472
hsdR STM4526 endonuclease Rchromosome CDS4780759 3510 - 0.55641
hsdS STM4524 type I restriction enzyme specificity proteinchromosome CDS4777606 1410 - 0.40922
iroC STM2774 putative ABC transporter proteinchromosome CDS2917573 3654 + 0.590312
mdlA STM0460 ATP-binding componentchromosome CDS516766 1773 + 0.557248
mdlB STM0461 putative transporterchromosome CDS518531 1782 + 0.578002
mrr STM4527 restriction endonucleasechromosome CDS4784466 915 + 0.527869
msbA STM0984 transport proteinchromosome CDS1070435 1749 + 0.516867
res STM0358.S DNA restriction enzymechromosome CDS405296 2976 + 0.491599
sapB STM1693 peptide transport proteinchromosome CDS1785324 966 + 0.531056
sapC STM1694 peptide transport proteinchromosome CDS1786276 891 + 0.579125
sapD STM1695 peptide transport proteinchromosome CDS1787166 993 + 0.51863
sapF STM1696 peptide transport proteinchromosome CDS1788160 807 + 0.542751
uppP STM3205 undecaprenyl pyrophosphate phosphatasechromosome CDS3370567 825 - 0.535758
yadG STM0172 putative ABC-type multidrug transport system ATPase componentchromosome CDS202181 927 + 0.497303
yadH STM0173 putative transport proteinchromosome CDS203104 771 + 0.540856
yajD STM0411 putative cytoplasmic proteinchromosome CDS466561 348 + 0.497126
ybhF STM0817 putative ABC-type multidrug transport system ATPase componentchromosome CDS881958 1737 - 0.558434
ybhR STM0815 putative transport proteinchromosome CDS879613 1107 - 0.528455
ybhS STM0816 putative transport proteinchromosome CDS880835 1131 - 0.544651
ybjR STM0931 putative aminidasechromosome CDS1005687 831 + 0.570397
ybjZ STM0942 putative transport proteinchromosome CDS1019726 1947 + 0.544427
ycfV STM1218 ATP-binding proteinchromosome CDS1303871 702 + 0.555556
ycgQ STM1800 putative microcin C7 resistance proteinchromosome CDS1898798 915 + 0.562842
ydhE STM1425 multidrug efflux protein NorAchromosome CDS1501962 1374 - 0.53639
ydhJ STM1442 putative multidrug resistance efflux pumpchromosome CDS1518586 897 - 0.500557
yeeO STM2013 putative transport proteinchromosome CDS2094377 1458 - 0.534979
yegN STM2127 putative outer membrane receptorchromosome CDS2215525 3123 + 0.581812
yegO STM2128 outer membrane putative efflux transporterchromosome CDS2218648 3081 + 0.565076
yhcQ STM3365 putative multidrug resistance proteinchromosome CDS3531973 933 - 0.565916
yhhJ STM3585 putative ABC transport proteinchromosome CDS3751834 1125 - 0.550222
yhiH STM3586.S putative ABC-type multidrug transport system ATPase componentchromosome CDS3752958 2742 - 0.579504
yohC STM2169 putative transport proteinchromosome CDS2266638 588 - 0.547619
 
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA2665 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS3001431 828 - 0.55314
NA ECA3325 ABC transporter ATP-binding proteinchromosome CDS3735875 939 - 0.518637
NA ECA0432 hypothetical proteinchromosome CDS492953 792 - 0.554293
NA ECA3268 putative toxin secretion ATP-binding proteinchromosome CDS3672395 2217 + 0.516013
NA ECA2762 putative efflux proteinchromosome CDS3103135 1428 + 0.519608
NA ECA0422 hypothetical proteinchromosome CDS478617 1191 - 0.551637
NA ECA1515 ABC transporter ATP binding proteinchromosome CDS1763515 717 + 0.545328
NA ECA2929 putative efflux proteinchromosome CDS3271911 3090 - 0.560194
NA ECA4448 hypothetical proteinchromosome CDS4990460 897 + 0.304348
NA ECA0597 hypothetical proteinchromosome CDS655150 1962 + 0.526504
NA ECA2414 putative ABC transporter ATP-binding proteinchromosome CDS2726216 1719 + 0.522978
NA ECA0423 hypothetical proteinchromosome CDS479801 1119 - 0.571046
NA ECA1514 putative permeasechromosome CDS1762389 1122 + 0.559715
NA ECA3475 hypothetical proteinchromosome CDS3896702 351 + 0.501424
NA ECA1097 putative type I secretion protein, ATP-binding proteinchromosome CDS1227176 2145 - 0.571562
NA ECA1513 putative permeasechromosome CDS1761092 1290 + 0.566667
NA ECA0077 hypothetical proteinchromosome CDS91666 1203 + 0.463009
NA ECA0584 restriction enzyme alpha subunitchromosome CDS645558 1872 + 0.438568
NA ECA0278 putative HlyD family secretion proteinchromosome CDS326310 966 + 0.549689
NA ECA0960 putative restriction enzymechromosome CDS1070915 2607 + 0.351745
NA ECA3324 ABC transporter integral membrane proteinchromosome CDS3735108 771 - 0.51751
NA ECA0585 restriction enzyme beta subunitchromosome CDS647419 987 + 0.379939
NA ECA4127 putative permeasechromosome CDS4605050 1284 - 0.566199
NA ECA0947 hypothetical proteinchromosome CDS1060623 894 + 0.512304
NA ECA0558 hypothetical proteinchromosome CDS625127 618 + 0.461165
acrB ECA1169 acriflavin resistance protein Bchromosome CDS1322899 3129 - 0.514222
acrD ECA4131 probable aminoglycoside efflux pumpchromosome CDS4609363 3123 - 0.569004
ampD ECA3795 anhydro-N-acetylmuramyl-tripeptide amidasechromosome CDS4242965 576 - 0.513889
ampE ECA3794 putative membrane-bound sensory transducerchromosome CDS4242114 855 - 0.550877
emrA ECA3512 multidrug resistance protein Achromosome CDS3932105 1176 + 0.539966
hsdM ECA3121 subunit M of type I restriction-modification systemchromosome CDS3486097 1473 - 0.514596
hsdR ECA3122 type I restriction enzyme EcoEI R proteinchromosome CDS3487642 2427 - 0.484137
hsdS ECA3120 subunit S of type I restriction-modification systemchromosome CDS3484442 1656 - 0.424517
lolD ECA1824 lipoprotein releasing system ATP-binding proteinchromosome CDS2071740 708 + 0.542373
macB ECA0887 macrolide-specific ABC-type efflux carrierchromosome CDS988067 1953 - 0.551459
mdlA ECA1158 ATP-binding component of ABC transporterchromosome CDS1312639 1770 + 0.525989
mdlB ECA1159 ATP-binding component of ABC transporterchromosome CDS1314401 1776 + 0.524212
mdtB ECA3185 multidrug transporterchromosome CDS3560370 3123 + 0.572526
mdtC ECA3186 multidrug transporterchromosome CDS3563489 3081 + 0.571243
mexB ECA3447 multidrug resistance proteinchromosome CDS3866439 3144 - 0.50827
msbA ECA2557 lipid a export ATP-binding/permeasechromosome CDS2885457 1785 - 0.50028
norM ECA1922 multidrug efflux protein NorAchromosome CDS2179897 1374 - 0.534935
sapB ECA1976 peptide transport system permease proteinchromosome CDS2242767 966 - 0.552795
sapC ECA1975 peptide transport system permease proteinchromosome CDS2241890 891 - 0.579125
sapD ECA1974 peptide transport system ATP-binding proteinchromosome CDS2240881 993 - 0.550856
sapF ECA1973 peptide transport system ATP-binding proteinchromosome CDS2240066 816 - 0.5625
uppP ECA3589 undecaprenyl pyrophosphate phosphatasechromosome CDS4035704 819 - 0.501832
 
Escherichia coli 536, 536
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECP_0925 probable transport ATP-binding proteinchromosome CDS977179 1749 + 0.50486
NA ECP_0806 putative membrane protein YbhRchromosome CDS840881 1107 - 0.527552
NA ECP_1965 hypothetical proteinchromosome CDS2018254 1515 - 0.50231
NA ECP_0469 hypothetical protein YajDchromosome CDS498096 348 + 0.462644
NA ECP_1348 peptide transport system ATP-binding protein SapFchromosome CDS1382148 807 - 0.515489
NA ECP_1968 hypothetical drug/sodium antiporterchromosome CDS2026635 1440 - 0.519444
NA ECP_0136 putative ABC superfamily (membrane) transport protein YadHchromosome CDS148818 771 + 0.507134
NA ECP_1350 peptide transport system permease protein SapCchromosome CDS1383948 891 - 0.572391
NA ECP_4786 inner membrane protein CreDchromosome CDS4935446 1353 + 0.498152
NA ECP_1349 peptide transport system ATP-binding protein SapDchromosome CDS1382956 993 - 0.513595
NA ECP_1610 putative MATE family transport proteinchromosome CDS1658415 1374 + 0.529112
NA ECP_3147 putative undecaprenol kinasechromosome CDS3314995 822 - 0.519465
NA ECP_2650 multidrug resistance protein Achromosome CDS2788711 1173 + 0.532822
NA ECP_3325 hypothetical protein YhcQchromosome CDS3489792 933 - 0.53269
NA ECP_0135 hypothetical ABC transporter ATP-binding protein YadGchromosome CDS147895 927 + 0.483279
NA ECP_0509 multidrug resistance-like ATP-binding protein MdlAchromosome CDS536111 1773 + 0.535251
 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_1857 hypothetical proteinchromosome CDS149709 771 + 0.508431
NA APECO1_2305 putative cation/multidrug efflux pump proteinchromosome CDS4719926 1065 + 0.465728
acrB APECO1_1552 acridine efflux pumpchromosome CDS496983 3150 - 0.534286
dinF APECO1_2425 DNA-damage-inducible SOS response protein DinFchromosome CDS4578963 1380 + 0.549275
ldcA APECO1_304 muramoyltetrapeptide carboxypeptidasechromosome CDS1253108 915 - 0.521311
mdtK APECO1_743 multidrug efflux system transporterchromosome CDS1760442 1374 + 0.533479
msbA APECO1_26 MsbAchromosome CDS970093 1749 + 0.504288
sapB APECO1_456 peptide transport system permease protein SapBchromosome CDS1420579 966 - 0.508282
sapC APECO1_455 ABC-type antimicrobial peptide transport system, permease componentchromosome CDS1419702 891 - 0.570146
sapD APECO1_454 putative ATP-binding protein of peptide transport systemchromosome CDS1418710 993 - 0.511581
sapF APECO1_453 putative ATP-binding protein of peptide transport systemchromosome CDS1417902 807 - 0.517968
uppP APECO1_3357 undecaprenyl pyrophosphate phosphatasechromosome CDS3504025 822 - 0.529197
yadG APECO1_1858 putative ABC transporter ATP-binding protein YadGchromosome CDS148786 927 + 0.484358
ybhR APECO1_1298 hypothetical proteinchromosome CDS789547 1107 - 0.524842
yegN APECO1_1165 hypothetical proteinchromosome CDS2242149 3123 + 0.568684
yhcQ APECO1_3203 hypothetical proteinchromosome CDS3670771 933 - 0.53269
 
Escherichia coli CFT073, CFT073
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA c1271 hypothetical proteinchromosome CDS1223811 297 - 0.356902
NA c5425 Putative restriction modification enzyme R subunitchromosome CDS5168686 2433 - 0.494862
NA c5424 Putative restriction modification enzyme M subunitchromosome CDS5167150 1524 - 0.501969
NA c5372 hypothetical proteinchromosome CDS5116943 3072 - 0.494792
NA c2452 hypothetical proteinchromosome CDS2265799 1515 - 0.50231
NA c2422 Putative inner membrane ABC-transporterchromosome CDS2224009 1803 - 0.572934
NA c2421 Putative ABC transporter proteinchromosome CDS2222220 1830 - 0.584153
NA c0361 Putative cytoplasmic membrane export proteinchromosome CDS337318 2148 + 0.497672
NA c1811 hypothetical proteinchromosome CDS1643745 309 + 0.430421
NA c1016 hypothetical proteinchromosome CDS976078 345 + 0.530435
NA c5357 hypothetical proteinchromosome CDS5099082 690 + 0.421739
NA c2456 hypothetical proteinchromosome CDS2274181 1440 - 0.519444
NA c1764 Acriflavine resistance protein Bchromosome CDS1597734 3018 + 0.5222
NA c5423 Putative restriction modification enzyme S subunitchromosome CDS5165381 1770 - 0.399435
NA c4551 hypothetical proteinchromosome CDS4327831 1065 - 0.465728
acrB c0580 Acriflavine resistance protein Bchromosome CDS555904 3150 - 0.533968
acrD c2997 Probable aminoglycoside efflux pumpchromosome CDS2858361 3114 + 0.544316
acrF c4032 Acriflavine resistance protein Fchromosome CDS3846801 3105 + 0.510145
ampC c5238 Beta-lactamase precursorchromosome CDS4986532 1167 - 0.502142
ampD c0129 AmpD proteinchromosome CDS123873 552 + 0.543478
ampE c0130 AmpE proteinchromosome CDS124421 855 + 0.51462
creD c5487 Inner membrane protein creDchromosome CDS5227954 1353 + 0.497413
dinF c5015 DNA-damage-inducible protein Fchromosome CDS4789772 1380 + 0.552899
emrA c3238 Multidrug resistance protein Achromosome CDS3091962 1185 + 0.533333
emrK c2904 Multidrug resistance protein Kchromosome CDS2764564 1164 - 0.414089
hlyB c3573 Hemolysin Bchromosome CDS3422041 2124 + 0.401601
iroC c1253 ATP binding cassette (ABC) transporter homologchromosome CDS1202758 3738 - 0.577582
ldcA c1641 Muramoyltetrapeptide carboxypeptidasechromosome CDS1479264 915 - 0.520219
lolD c1392 Lipoprotein releasing system ATP-binding protein lolDchromosome CDS1320846 702 + 0.555556
mchF c1232 Probable microcin H47 secretion ATP-binding proteinchromosome CDS1180751 2115 + 0.460047
mdlA c0565 Multidrug resistance-like ATP-binding protein mdlAchromosome CDS543521 1773 + 0.533559
mdlB c0566 Multidrug resistance-like ATP-binding protein mdlBchromosome CDS545172 1896 + 0.559599
msbA c1054 Probable transport ATP-binding protein msbAchromosome CDS1017580 1749 + 0.503145
sapB c1770 Peptide transport system permease protein sapBchromosome CDS1606025 966 - 0.508282
sapC c1769 Peptide transport system permease protein sapCchromosome CDS1605148 891 - 0.570146
sapD c1768 Peptide transport system ATP-binding protein sapDchromosome CDS1604156 993 - 0.513595
sapF c1767 Peptide transport system ATP-binding protein sapFchromosome CDS1603348 807 - 0.516729
uppP c3807 undecaprenyl pyrophosphate phosphatasechromosome CDS3643903 825 - 0.528485
yadG c0156 Hypothetical ABC transporter ATP-binding protein yadGchromosome CDS152984 927 + 0.483279
yadH c0157 Hypothetical protein yadHchromosome CDS153907 771 + 0.507134
yaiH c0480 Penicillin-binding protein ampHchromosome CDS469175 1158 - 0.549223
yajD c0520 Hypothetical protein yajDchromosome CDS504728 417 + 0.46283
ybhF c0877 Hypothetical ABC transporter ATP-binding protein ybhFchromosome CDS849867 1752 - 0.558219
ybhR c0875 Hypothetical protein ybhRchromosome CDS847624 1107 - 0.522132
ybhS c0876 Hypothetical protein ybhSchromosome CDS848741 1134 - 0.550265
ybjR c1000 Probable N-acetylmuramoyl-L-alanine amidase ybjRchromosome CDS959042 831 + 0.566787
ydhE c2057 multidrug efflux protein NorAchromosome CDS1899595 1374 + 0.532751
ydhJ c2036 Hypothetical protein ydhJchromosome CDS1881751 900 + 0.505556
yeeO c2448 Hypothetical protein yeeOchromosome CDS2261008 1641 + 0.484461
yegN c2601 Hypothetical protein yegNchromosome CDS2441849 3123 + 0.5626
yegO c2602 Hypothetical protein yegOchromosome CDS2444972 3078 + 0.561404
yhcQ c3996 Hypothetical protein yhcQchromosome CDS3811673 933 - 0.53269
yhhJ c4285 Hypothetical protein yhhJchromosome CDS4063552 1209 - 0.544251
yhiH c4286 Hypothetical ABC transporter ATP-binding protein yhiHchromosome CDS4064676 2736 - 0.564327
yhiV c4325 Hypothetical protein yhiVchromosome CDS4099159 3114 + 0.530829
yibH c4414 Hypothetical protein yibHchromosome CDS4197726 1137 - 0.532102
yjcR c5087 Hypothetical protein yjcRchromosome CDS4862237 1032 - 0.564922
 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
aaeA b3241 p-hydroxybenzoic acid efflux system componentchromosome CDS3386216 933 - 0.535906
acrB b0462 multidrug efflux system proteinchromosome CDS480478 3150 - 0.539683
acrD b2470 aminoglycoside/multidrug efflux systemchromosome CDS2585617 3114 + 0.544637
acrF b3266 multidrug efflux system proteinchromosome CDS3413055 3105 + 0.515298
ampC b4150 beta-lactamase/D-alanine carboxypeptidasechromosome CDS4375834 1134 - 0.501764
ampD b0110 N-acetyl-anhydromuranmyl-L-alanine amidasechromosome CDS118733 552 + 0.538043
ampE b0111 predicted inner membrane proteinchromosome CDS119281 855 + 0.520468
ampH b0376 beta-lactamase/D-alanine carboxypeptidasechromosome CDS394354 1158 - 0.553541
bacA b3057 undecaprenyl pyrophosphate phosphatasechromosome CDS3201332 822 - 0.524331
creD b4400 inner membrane proteinchromosome CDS4636201 1353 + 0.495935
dinF b4044 DNA-damage-inducible SOS response proteinchromosome CDS4255765 1380 + 0.557246
emrA b2685 multidrug efflux systemchromosome CDS2809449 1173 + 0.533674
emrK b2368 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein componentchromosome CDS2480198 1164 - 0.419244
hsdM b4349 DNA methylase Mchromosome CDS4579482 1590 - 0.548428
hsdR b4350 endonuclease Rchromosome CDS4581272 3567 - 0.537146
hsdS b4348 specificity determinant for hsdM and hsdRchromosome CDS4578091 1395 - 0.404301
ldcA b1192 L,D-carboxypeptidase Achromosome CDS1241389 915 - 0.530055
macB b0879 fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane componentchromosome CDS919570 1947 + 0.539291
mcrA b1159 e14 prophage; 5-methylcytosine-specific restriction endonuclease Bchromosome CDS1209569 834 + 0.383693
mcrC b4345 5-methylcytosine-specific restriction enzyme McrBC, subunit McrCchromosome CDS4574935 1047 - 0.374403
mdlA b0448 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding componentschromosome CDS468095 1773 + 0.540327
mdlB b0449 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding componentschromosome CDS469860 1782 + 0.562851
mdtB b2075 multidrug efflux system, subunit Bchromosome CDS2153287 3123 + 0.566122
mdtC b2076 multidrug efflux system, subunit Cchromosome CDS2156410 3078 + 0.562703
mdtF b3514 multidrug transporter, RpoS-dependentchromosome CDS3658437 3114 + 0.530186
mdtK b1663 multidrug efflux protein NorMchromosome CDS1741481 1374 + 0.52984
mrr b4351 methylated adenine and cytosine restriction proteinchromosome CDS4584972 915 + 0.506011
msbA b0914 fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding componentchromosome CDS965844 1749 + 0.508862
rbbA b3486 fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane proteinchromosome CDS3624826 2736 - 0.567251
sapB b1293 predicted antimicrobial peptide transporter subunitchromosome CDS1352529 966 - 0.514493
sapC b1292 predicted antimicrobial peptide transporter subunitchromosome CDS1351652 891 - 0.569024
sapD b1291 predicted antimicrobial peptide transporter subunitchromosome CDS1350660 993 - 0.513595
sapF b1290 predicted antimicrobial peptide transporter subunitchromosome CDS1349852 807 - 0.511772
yadG b0127 predicted transporter subunit: ATP-binding component of ABC superfamilychromosome CDS142779 927 + 0.496224
yadH b0128 predicted transporter subunit: membrane component of ABC superfamilychromosome CDS143702 771 + 0.507134
yajD b0410 hypothetical proteinchromosome CDS429829 348 + 0.471264
ybhR b0792 predicted transporter subunit: membrane component of ABC superfamilychromosome CDS824225 1107 - 0.523035
ybhS b0793 predicted transporter subunit: membrane component of ABC superfamilychromosome CDS825342 1134 - 0.551146
ybjR b0867 predicted amidase and lipoproteinchromosome CDS904136 831 + 0.56077
yeeO b1985 predicted multidrug efflux systemchromosome CDS2056227 1644 - 0.482968
yhhJ b3485 predicted transporter subunit: membrane component of ABC superfamilychromosome CDS3623702 1125 - 0.546667
yiaV b3586 membrane fusion protein (MFP) component of efflux pump, signal anchorchromosome CDS3750986 1137 - 0.506596
yibH b3597 hypothetical proteinchromosome CDS3768266 1137 - 0.526825
yigF b3817 conserved inner membrane proteinchromosome CDS4000442 381 - 0.349081
yjcR b4082 predicted membrane fusion protein of efflux pumpchromosome CDS4301101 1032 - 0.559109
 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z6047 putative DNAse encoded by cryptic prophage CP-933Pchromosome CDS2308786 366 - 0.568306
NA Z1594 hypothetical proteinchromosome CDS1481944 738 - 0.302168
NA Z0634 putative cytoplasmic membrane export proteinchromosome CDS601519 2163 + 0.571429
NA Z5900 hypothetical proteinchromosome CDS5406645 4935 + 0.519352
NA Z2507 hypothetical proteinchromosome CDS2230013 168 - 0.541667
NA Z1852 putative holin protein of prophage CP-933Cchromosome CDS1690182 390 + 0.551282
NA Z1800 unknown protein encoded by prophage CP-933Nchromosome CDS1647591 366 + 0.554645
NA Z5947 putative restriction modification enzyme M subunit (methylase)chromosome CDS5469600 1482 - 0.503374
NA Z3144 hypothetical proteinchromosome CDS2804386 1140 - 0.486842
NA Z5948 putative restriction modification enzyme R subunit (endonuclease)chromosome CDS5471136 2433 - 0.494451
NA Z1552 hypothetical proteinchromosome CDS1447257 708 + 0.44774
NA Z5337 hypothetical proteinchromosome CDS4867416 387 - 0.341085
NA Z3143 hypothetical proteinchromosome CDS2804038 324 - 0.521605
NA Z2659 hypothetical proteinchromosome CDS2396142 900 + 0.501111
NA Z1356 unknown protein encoded by cryptic prophage CP-933Mchromosome CDS1273463 285 + 0.575439
NA Z1155 hypothetical proteinchromosome CDS1086337 738 - 0.302168
NA Z5892 hypothetical proteinchromosome CDS5388810 885 - 0.493785
NA Z3695 hypothetical proteinchromosome CDS3341233 1293 + 0.520495
NA Z5211 hypothetical proteinchromosome CDS4755267 2409 - 0.312163
NA Z1955 hypothetical proteinchromosome CDS1775100 915 - 0.525683
NA Z5946 putative restriction modification enzyme S subunitchromosome CDS5467846 1755 - 0.417094
NA Z1100 putative regulatorchromosome CDS1037685 831 + 0.56799
NA Z2508 putative efflux pumpchromosome CDS2230032 3084 - 0.51524
EHEC-hlyB L7049 hemolysin transport proteinpO157 CDS42868 2121 + 0.37388
acrB Z0576 acridine efflux pumpchromosome CDS547322 3150 - 0.537778
acrD Z3727 sensitivity to acriflavine, integral membrane protein, possible efflux pumpchromosome CDS3373553 3114 + 0.541747
acrF_1 Z4626 N-terminal fragment of integral transmembrane protein involved with acridine resistancechromosome CDS4217210 1887 + 0.510864
acrF_2 Z4627 C-terminal fragment of integral transmembrane protein involved with acridine resistancechromosome CDS4219127 1233 + 0.512571
ampC Z5757 beta-lactamase; penicillin resistance proteinchromosome CDS5262076 1134 - 0.504409
ampD Z0120 regulates ampCchromosome CDS123223 552 + 0.539855
ampE Z0121 regulates ampCchromosome CDS123771 855 + 0.520468
creD Z6003 tolerance to colicin E2chromosome CDS5524971 1353 + 0.494457
dinF Z5643 DNA-damage-inducible protein Fchromosome CDS5140910 1380 + 0.551449
emrA Z3986 multidrug resistance secretion proteinchromosome CDS3602875 1173 + 0.533674
emrK Z3630 multidrug resistance protein Kchromosome CDS3280272 1164 - 0.417526
mdlA Z0557 ATP-binding component of a transport systemchromosome CDS534937 1773 + 0.539199
mdlB Z0559 putative ATP-binding component of a transport systemchromosome CDS536702 1782 + 0.560045
msbA Z1260 ATP-binding transport protein; multicopy suppressor of htrBchromosome CDS1185486 1749 + 0.50829
sapB Z2496 homolog of Salmonella peptide transport permease proteinchromosome CDS2223768 966 + 0.512422
sapC Z2498 homolog of Salmonella peptide transport permease proteinchromosome CDS2224720 891 + 0.572391
sapD Z2499 putative ATP-binding protein of peptide transport systemchromosome CDS2225610 993 + 0.502518
sapF Z2500 putative ATP-binding protein of peptide transport systemchromosome CDS2226604 807 + 0.51425
uppP Z4410 undecaprenyl pyrophosphate phosphatasechromosome CDS4010153 822 - 0.524331
yadG Z0138 putative ATP-binding component of a transport systemchromosome CDS147152 927 + 0.492988
yadH Z0139 hypothetical proteinchromosome CDS148075 771 + 0.509728
yaiH Z0472 putative enzymechromosome CDS454911 1158 - 0.551813
yajD Z0511 hypothetical proteinchromosome CDS494862 348 + 0.471264
ybhF Z1014 putative ATP-binding component of a transport systemchromosome CDS951265 1752 - 0.557078
ybhR Z1012 hypothetical proteinchromosome CDS949022 1107 - 0.523939
ybhS Z1013 hypothetical proteinchromosome CDS950139 1134 - 0.552028
ybjZ Z1116 putative ATP-binding component of a transport systemchromosome CDS1053082 1947 + 0.53775
ycfV Z1758 putative ATP-binding component of a transport systemchromosome CDS1620855 687 + 0.556041
ydhE Z2690 multidrug efflux protein NorAchromosome CDS2418364 1374 + 0.533479
yegN Z3244 hypothetical proteinchromosome CDS2900915 3123 + 0.564521
yegO Z3245 hypothetical proteinchromosome CDS2904038 3078 + 0.563678
yhcQ Z4600 hypothetical proteinchromosome CDS4190649 930 - 0.53871
yhhJ Z4884 putative transporterchromosome CDS4427378 1128 - 0.537234
yhiH Z4885 putative ATP-binding component of a transport system, fragment 1chromosome CDS4428502 2685 - 0.562756
yhiV Z4927 putative transport system permease proteinchromosome CDS4469776 3114 + 0.528902
yiaV Z5006 hypothetical proteinchromosome CDS4561525 1137 - 0.506596
yibH Z5021 hypothetical proteinchromosome CDS4580172 1137 - 0.526825
yjcR Z5682 hypothetical proteinchromosome CDS5185748 1032 - 0.552326
 
Escherichia coli O157:H7 str. Sakai, Sakai
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECs5027 DNA-damage-inducible protein Fchromosome CDS5110924 1380 + 0.552174
NA ECs5131 beta-lactamasechromosome CDS5232091 1134 - 0.504409
NA ECs1867 putative ATP-binding protein of peptide transport systemchromosome CDS1859761 807 - 0.51425
NA ECs0502 ATP-binding component of a transport systemchromosome CDS534934 1773 + 0.539199
NA ECs2372 multidrug efflux protein NorAchromosome CDS2343168 1374 + 0.534207
NA ECs5306 type I restriction-modification enzyme S subunitchromosome CDS5437853 1755 - 0.417094
NA ECs0131 putative ATP-binding component of a transport systemchromosome CDS147151 927 + 0.492988
NA ECs1540 putative Dnasechromosome CDS1561468 366 + 0.568306
NA ECs1868 putative ATP-binding protein of peptide transport systemchromosome CDS1860569 993 - 0.502518
NA ECs4462 hypothetical proteinchromosome CDS4494296 1137 - 0.506596
NA ECs0543 putative ATP-binding component of a transport systemchromosome CDS601867 2121 + 0.5719
NA ECs5358 CreDchromosome CDS5494976 1353 + 0.495935
NA ECs0953 putative regulatorchromosome CDS1036025 831 + 0.56799
NA ECs0870 hypothetical proteinchromosome CDS947369 1107 - 0.523939
NA ECs3547 multidrug resistance secretion proteinchromosome CDS3535585 1173 + 0.533674
NA ECs4473 hypothetical proteinchromosome CDS4511190 1137 - 0.526825
NA ECs4359 putative ATP-binding component of a transport systemchromosome CDS4361280 2685 - 0.562756
NA ECs3332 aminoglycoside efflux pumpchromosome CDS3303719 3114 + 0.541747
NA ECs0426 hypothetical proteinchromosome CDS454909 1158 - 0.551813
NA ECs2353 hypothetical proteinchromosome CDS2320990 858 + 0.502331
NA ECs1495 putative ATP-binding component of a transport systemchromosome CDS1535744 702 + 0.551282
NA ECs0114 AmpDchromosome CDS123222 552 + 0.539855
NA ECs1870 homolog of Salmonella peptide transport permease proteinchromosome CDS1862438 966 - 0.512422
NA ECs0463 hypothetical proteinchromosome CDS494860 348 + 0.471264
NA ECs0132 hypothetical proteinchromosome CDS148074 771 + 0.509728
NA ECs1292 putative ATP binding protein of ABC transporterchromosome CDS1363485 708 + 0.44774
NA ECs5308 type I restriction-modification enzyme R subunitchromosome CDS5441143 2433 - 0.494451
NA ECs0871 hypothetical proteinchromosome CDS948486 1134 - 0.552028
NA ECs2883 hypothetical proteinchromosome CDS2830697 3123 + 0.564521
NA ECs2254 putative Dnasechromosome CDS2233503 366 - 0.568306
NA ECs0965 putative ATP-binding component of a transport systemchromosome CDS1051422 1947 + 0.538264
NA ECs2884 hypothetical proteinchromosome CDS2833820 3078 + 0.564327
NA ECs5262 hypothetical proteinchromosome CDS5376642 4935 + 0.519554
NA ECs0115 AmpEchromosome CDS123770 855 + 0.520468
NA ECs1595 hypothetical proteinchromosome CDS1606158 441 + 0.55102
NA ECs1864 putative multidrug-efflux transport proteinchromosome CDS1854058 3084 + 0.51524
NA ECs3301 hypothetical proteinchromosome CDS3271387 1305 + 0.51954
NA ECs0503 putative ATP-binding component of a transport systemchromosome CDS536699 1782 + 0.560045
NA ECs4358 putative transporterchromosome CDS4360156 1125 - 0.537778
NA ECs0515 acridine efflux pumpchromosome CDS547319 3150 - 0.537778
NA ECs1968 putative DNasechromosome CDS1947240 366 + 0.568306
NA ECs5064 hypothetical proteinchromosome CDS5155763 1032 - 0.552326
NA ECs5254 hypothetical proteinchromosome CDS5358807 852 - 0.498826
NA ECs4394 putative transport system permease proteinchromosome CDS4402549 3114 + 0.529223
NA ECs5307 type I restriction modification enzyme M subunitchromosome CDS5439607 1482 - 0.503374
NA ECs3247 multidrug resistance protein Kchromosome CDS3210313 1164 - 0.417526
NA ECs0872 putative ATP-binding component of a transport systemchromosome CDS949612 1737 - 0.556707
NA ECs0997 ATP-binding transport proteinchromosome CDS1096263 1749 + 0.50829
NA ECs1688 L, D-carboxyprptidasechromosome CDS1683694 915 - 0.525683
NA ECs1869 homolog of Salmonella peptide transport permease proteinchromosome CDS1861561 891 - 0.572391
NA ECs4114 hypothetical proteinchromosome CDS4123431 930 - 0.53871
NA ECs4653 hypothetical proteinchromosome CDS4686286 2409 - 0.312163
NA ECs1789 putative Dnasechromosome CDS1779942 366 + 0.568306
hlyB pO157p19 hemolysin BpO157 CDS19658 2121 + 0.37388
uppP ECs3940 undecaprenyl pyrophosphate phosphatasechromosome CDS3942838 822 - 0.525547
 
Escherichia coli UTI89, UTI89
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA UTI89_C2211 hypothetical proteinchromosome CDS2125355 1440 - 0.519444
NA UTI89_C2208 hypothetical proteinchromosome CDS2116974 1515 - 0.50231
acrB UTI89_C0489 acridine efflux pumpchromosome CDS495385 3150 - 0.533968
bacA UTI89_C3493 bacitracin resistance protein BacAchromosome CDS3431119 825 - 0.528485
dinF UTI89_C4614 DNA-damage-inducible protein F; MATE family transporterchromosome CDS4506661 1380 + 0.549275
emrA UTI89_C3045 multidrug resistance protein Achromosome CDS2968153 1185 + 0.530802
ldcA UTI89_C1378 muramoyltetrapeptide carboxypeptidasechromosome CDS1314700 915 - 0.521311
lolD UTI89_C1245 lipoprotein releasing system ATP-binding protein lolDchromosome CDS1221599 702 + 0.551282
msbA UTI89_C0985 probable transport ATP-binding protein MsbAchromosome CDS971126 1749 + 0.504288
sapB UTI89_C1570 peptide transport system permease protein SapBchromosome CDS1482663 966 - 0.508282
sapC UTI89_C1569 peptide transport system permease protein SapCchromosome CDS1481786 891 - 0.570146
sapD UTI89_C1568 putative ATP-binding protein of peptide transport systemchromosome CDS1480794 993 - 0.511581
sapF UTI89_C1567 peptide transport system ATP-binding protein sapFchromosome CDS1479986 807 - 0.517968
yadG UTI89_C0140 conserved hypothetical protein YadGchromosome CDS148810 927 + 0.484358
yadH UTI89_C0141 hypothetical proteinchromosome CDS149733 771 + 0.508431
yaiH UTI89_C0391 penicillin-binding protein AmpHchromosome CDS409367 1158 - 0.549223
ybhR UTI89_C0793 hypothetical proteinchromosome CDS787946 1107 - 0.524842
ydhE UTI89_C1854 multidrug resistance protein NorMchromosome CDS1779215 1374 + 0.533479
yegN UTI89_C2350 hypothetical protein YegNchromosome CDS2292643 3123 + 0.568684
yhcQ UTI89_C3672 hypothetical protein YhcQchromosome CDS3597859 933 - 0.53269
yhhJ UTI89_C4006 hypothetical protein YhhJchromosome CDS3891387 1209 - 0.544251
yibH UTI89_C4135 hypothetical protein YibHchromosome CDS4025945 1137 - 0.532102
 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
aaeA p-hydroxybenzoic acid efflux system componentchromosome CDS3388049 933 - 0.535906
acrB multidrug efflux system proteinchromosome CDS480478 3150 - 0.539683
acrD aminoglycoside/multidrug efflux systemchromosome CDS2586251 3114 + 0.544637
acrF multidrug efflux system proteinchromosome CDS3414888 3105 + 0.515298
ampC beta-lactamase/D-alanine carboxypeptidasechromosome CDS4382491 1134 - 0.501764
ampD N-acetyl-anhydromuranmyl-L-alanine amidasechromosome CDS118733 552 + 0.538043
ampE predicted inner membrane proteinchromosome CDS119281 855 + 0.520468
ampH beta-lactamase/D-alanine carboxypeptidasechromosome CDS394354 1158 - 0.553541
bacA undecaprenyl pyrophosphate phosphatasechromosome CDS3201966 822 - 0.524331
creD inner membrane proteinchromosome CDS4642858 1353 + 0.495935
dinF DNA-damage-inducible SOS response proteinchromosome CDS4261332 1380 + 0.557246
emrA multidrug efflux systemchromosome CDS2810083 1173 + 0.533674
emrK EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein componentchromosome CDS2487622 1164 - 0.419244
hsdM DNA methylase Mchromosome CDS4586139 1590 - 0.548428
hsdR endonuclease Rchromosome CDS4587929 3567 - 0.537146
hsdS specificity determinant for hsdM and hsdRchromosome CDS4584748 1395 - 0.404301
ldcA L,D-carboxypeptidase Achromosome CDS1243743 915 - 0.530055
macB fused macrolide transporter subunits and ATP-binding component and membrane component of ABC superfamilychromosome CDS920769 1947 + 0.539291
mcrA 5-methylcytosine-specific restriction endonuclease Bchromosome CDS1211923 834 + 0.383693
mcrC 5-methylcytosine-specific restriction enzyme McrBC, subunit McrCchromosome CDS4581592 1047 - 0.374403
mdlA fused predicted multidrug transporter subunits and ATP-binding components of ABC superfamilychromosome CDS468095 1773 + 0.540327
mdlB fused predicted multidrug transporter subunits and ATP binding components of ABC superfamilychromosome CDS469860 1782 + 0.562851
mdtB multidrug efflux system, subunit Bchromosome CDS2157400 3123 + 0.566122
mdtC multidrug efflux system, subunit Cchromosome CDS2160523 3078 + 0.562703
mdtF multidrug transporter, RpoS-dependentchromosome CDS3976888 3114 - 0.530186
mdtK multidrug efflux system transporterchromosome CDS1745171 1374 + 0.52984
mrr methylated adenine and cytosine restriction proteinchromosome CDS4591629 915 + 0.506011
msbA fused lipid transporter subunits and membrane component and ATP-binding component of ABC superfamilychromosome CDS967043 1749 + 0.508862
rbbA fused ribosome-associated ATPaseschromosome CDS4010877 2736 + 0.567251
sapB predicted antimicrobial peptide transporter subunitchromosome CDS1356219 966 - 0.514493
sapC predicted antimicrobial peptide transporter subunitchromosome CDS1355342 891 - 0.569024
sapD predicted antimicrobial peptide transporter subunitchromosome CDS1354350 993 - 0.513595
sapF predicted antimicrobial peptide transporter subunitchromosome CDS1353542 807 - 0.511772
yadG predicted transporter subunitchromosome CDS142779 927 + 0.496224
yadH predicted transporter subunitchromosome CDS143702 771 + 0.507134
yajD hypothetical proteinchromosome CDS429829 348 + 0.471264
ybhR predicted transporter subunitchromosome CDS825424 1107 - 0.523035
ybhS predicted transporter subunitchromosome CDS826541 1134 - 0.551146
ybjR predicted amidase and lipoproteinchromosome CDS905335 831 + 0.56077
yeeO predicted multidrug efflux systemchromosome CDS2060340 1644 - 0.482968
yhhJ predicted transporter subunitchromosome CDS4013612 1125 + 0.546667
yiaV membrane fusion protein (MFP) component of efflux pump, signal anchorchromosome CDS3886316 1137 + 0.506596
yibH hypothetical proteinchromosome CDS3869036 1137 + 0.526825
yigF conserved inner membrane proteinchromosome CDS3633882 381 + 0.349081
yjcR predicted membrane fusion protein of efflux pumpchromosome CDS4306557 1032 - 0.559109
 
Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu0526 hypothetical proteinchromosome CDS582534 1185 - 0.30211
NA plu0166 hypothetical proteinchromosome CDS174833 1596 + 0.370301
NA plu1215 hypothetical proteinchromosome CDS1405353 1647 + 0.476017
NA plu4515 hypothetical proteinchromosome CDS5273580 1146 - 0.419721
NA plu0798 hypothetical proteinchromosome CDS918542 1341 - 0.427293
NA plu3516 hypothetical proteinchromosome CDS4111479 1362 - 0.370778
NA plu2775 hypothetical proteinchromosome CDS3289145 3147 + 0.483317
NA plu1163 hypothetical proteinchromosome CDS1347696 723 + 0.448133
NA plu4679 hypothetical proteinchromosome CDS5455579 1173 + 0.43734
NA plu0167 hypothetical proteinchromosome CDS176521 1590 + 0.37044
NA plu1047 hypothetical proteinchromosome CDS1227215 330 + 0.472727
NA plu0114 hypothetical proteinchromosome CDS117629 498 + 0.463855
NA plu2741 hypothetical proteinchromosome CDS3250659 1656 - 0.43599
NA plu0233 hypothetical proteinchromosome CDS242879 3207 + 0.42875
NA plu4325 hypothetical proteinchromosome CDS5054141 873 - 0.463918
NA plu0758 hypothetical proteinchromosome CDS874298 3042 - 0.402696
NA plu2776 hypothetical proteinchromosome CDS3292288 3111 + 0.465445
NA plu2647 hypothetical proteinchromosome CDS3101304 1206 - 0.467662
NA plu1214 hypothetical proteinchromosome CDS1403602 1755 + 0.446154
NA plu0634 hypothetical proteinchromosome CDS726383 2136 + 0.549625
NA plu0164 hypothetical proteinchromosome CDS170905 1593 + 0.35091
NA plu2648 hypothetical proteinchromosome CDS3102511 612 - 0.464052
NA plu2319 hypothetical proteinchromosome CDS2718441 1803 + 0.462008
NA plu2710 hypothetical proteinchromosome CDS3211815 1650 - 0.570909
NA plu3127 hypothetical proteinchromosome CDS3667994 2160 + 0.573148
NA plu4877 hypothetical proteinchromosome CDS5648342 528 + 0.268939
NA plu1158 hypothetical proteinchromosome CDS1342839 1974 + 0.519757
NA plu2318 hypothetical proteinchromosome CDS2716778 1719 + 0.470041
NA plu2735 hypothetical proteinchromosome CDS3246565 666 + 0.396396
NA plu0165 hypothetical proteinchromosome CDS172935 1590 + 0.37673
NA plu3125 hypothetical proteinchromosome CDS3664486 2121 + 0.547855
NA plu4145 hypothetical proteinchromosome CDS4844036 1854 - 0.470874
NA plu1331 hypothetical proteinchromosome CDS1546913 2151 - 0.456067
NA plu2736 hypothetical proteinchromosome CDS3247233 1224 + 0.413399
NA plu2790 hypothetical proteinchromosome CDS3310338 822 - 0.411192
NA plu0852 hypothetical proteinchromosome CDS981439 2094 - 0.278415
NA plu3400 hypothetical proteinchromosome CDS4022092 327 - 0.415902
NA plu4514 hypothetical proteinchromosome CDS5272435 1146 - 0.426702
NA plu0409 hypothetical proteinchromosome CDS437453 453 + 0.291391
NA plu0162 hypothetical proteinchromosome CDS168154 1593 + 0.365348
NA plu0761 hypothetical proteinchromosome CDS880009 1401 - 0.327623
NA plu2742 hypothetical proteinchromosome CDS3252311 1638 - 0.422466
NA plu0554 hypothetical proteinchromosome CDS626201 741 + 0.357625
acrB plu3852 acriflavin resistance protein Bchromosome CDS4523435 3150 + 0.445714
ampC plu0831 beta-lactamase class C (cephalosporinase)chromosome CDS962865 1158 - 0.505181
ampE plu3636 Signaling protein AmpEchromosome CDS4283634 855 - 0.433918
ampH plu4478 Penicillin-binding protein AmpHchromosome CDS5229609 1218 + 0.465517
cat3 plu2449 chloramphenicol acetyltransferase (CATIII)chromosome CDS2876555 639 - 0.350548
emrA plu1276 multidrug resistant protein Achromosome CDS1485592 1185 - 0.42616
hsdM plu4319 Type I site-specific deoxyribonuclease HsdMchromosome CDS5043966 1557 + 0.420681
hsdR plu4322 Type I site-specific deoxyribonuclease HsdRchromosome CDS5047798 3117 + 0.375361
hsdS plu4320 Type I restriction enzyme specificity protein HsdSchromosome CDS5045519 1098 + 0.387978
lolD plu2813 Lipoprotein releasing system ATP-binding protein lolDchromosome CDS3339521 705 - 0.453901
macB plu1591 Macrolide-specific ABC-type efflux carrier protein MacBchromosome CDS1897349 1944 + 0.454218
mdlA plu3859 multidrug resistance-like ATP-binding proteinchromosome CDS4533389 1770 - 0.431073
mdlB plu3858 multidrug resistance-like ATP-binding proteinchromosome CDS4531612 1785 - 0.42521
msbA plu1630 Probable transport ATP-binding protein MsbAchromosome CDS1947351 1746 + 0.455326
norM plu2611 multidrug efflux protein NorAchromosome CDS3054238 1374 + 0.435953
rtxB plu1333 RTX toxin ABC transporter (IM-ABC) protein RtxBchromosome CDS1550414 2106 - 0.419278
sapB plu2588 Peptide transport system permease protein SapBchromosome CDS3030750 966 + 0.445135
sapC plu2589 Peptide transport system permease protein SapCchromosome CDS3031702 891 + 0.472503
sapD plu2590 Peptide transport system ATP-binding protein SapDchromosome CDS3032592 993 + 0.466264
sapF plu2591 Peptide transport system ATP-binding protein SapFchromosome CDS3033585 810 + 0.441975
tccB1 plu4168 Insecticidal toxin complex protein TccB1chromosome CDS4869362 4695 - 0.482428
uppP plu3973 undecaprenyl pyrophosphate phosphatasechromosome CDS4659987 819 - 0.420024
wblP plu4812 WblP proteinchromosome CDS5588630 408 + 0.289216
yadG plu0868 ABC transporter ATP-binding protein YadGchromosome CDS995950 912 + 0.426535
yadH plu0869 ABC transporter, integral membrane protein YadHchromosome CDS996873 771 + 0.412451
ybhF plu1508 ABC transporter ATP-binding protein YbhFchromosome CDS1806639 1740 - 0.476437
ybhR plu1506 ABC transporter permease protein YbhRchromosome CDS1804363 1107 - 0.435411
ybhS plu1507 ABC transporter permease protein YbhSchromosome CDS1805482 1161 - 0.44186
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC170 hypothetical proteinpSC138 CDS129244 2208 + 0.42663
ampC SC090 extended spectrum beta-lactamasepSC138 CDS69966 1230 + 0.531707
cat2 SC011 chloramphenicol acetyl transferase IIpSC138 CDS10014 642 - 0.429907
tem-1 SC018 beta-lactamasepSC138 CDS14817 810 + 0.495062
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC4141 putative ABC-type bacteriocin/lantibiotic exporter, contain an N-terminal double-glycine peptidase domainchromosome CDS4433810 2067 + 0.357039
NA SC4354 hypothetical proteinchromosome CDS4660161 876 + 0.512557
NA SC1244 hypothetical proteinchromosome CDS1354892 966 - 0.377847
acrB SC0517 RND family, acridine efflux pumpchromosome CDS573616 3150 - 0.544444
acrD SC2476 RND family, aminoglycoside/multidrug efflux pumpchromosome CDS2607537 3114 + 0.552023
acrF SC3328 RND family, multidrug transport protein, acriflavin resistance protein Fchromosome CDS3517007 3114 + 0.508992
ampD SC0145 N-acetyl-anhydromuramyl-L-alanine amidasechromosome CDS165412 564 + 0.553191
ampE SC0146 putative transmembrane proteinchromosome CDS165972 855 + 0.557895
ampH SC0416 penicillin- binding proteinchromosome CDS473348 1158 - 0.52677
creD SC4435 tolerance to colicin E2chromosome CDS4744672 1350 + 0.534815
dinF SC4117 DNA-damage-inducible protein F, induced by UV and mitomycin C; SOS, lexA regulonchromosome CDS4394652 1326 + 0.570136
emrA SC2748 multidrug resistance secretion proteinchromosome CDS2916435 1200 + 0.543333
iroC SC2705 putative ATP binding cassette (ABC) transporterchromosome CDS2872255 3657 + 0.58682
marB SC1536 multiple antibiotic resistance proteinchromosome CDS1634998 258 - 0.5
mdlA SC0502 putative ABC superfamily (atp) transporterchromosome CDS561124 1773 + 0.552735
mdlB SC0503 putative ABC superfamily (atp&membrane) transporterchromosome CDS562889 1782 + 0.577441
msbA SC0941 ABC superfamily (atp&membrane) transport protein; multicopy repressor of htrBchromosome CDS1055697 1749 + 0.516295
res SC0399 DNA restriction (DNA helicasechromosome CDS449840 2973 + 0.490077
rtxI SC2694 putative ABC transporter transmembrane regionchromosome CDS2857699 2181 + 0.566254
sapB SC1686 ABC superfamily (membrane), peptide transport proteinchromosome CDS1798457 966 + 0.530021
sapC SC1687 ABC superfamily (membrane), peptide transport proteinchromosome CDS1799409 891 + 0.579125
sapD SC1688 ABC superfamily (atp-binding), peptide transport proteinchromosome CDS1800299 993 + 0.523666
sapF SC1689 ABC superfamily (atp-binding), peptide transport proteinchromosome CDS1801293 807 + 0.539033
uppP SC3152 undecaprenyl pyrophosphate phosphatasechromosome CDS3332642 825 - 0.539394
yadG SC0172 putative ABC-type multidrug transport system, ATPase componentchromosome CDS198291 927 + 0.495146
yadH SC0173 putative ABC superfamily (membrane) transport proteinchromosome CDS199214 771 + 0.539559
yajD SC0453 putative cytoplasmic proteinchromosome CDS511050 348 + 0.502874
ybhF SC0814 putative ABC-type multidrug transport system, ATPase componentchromosome CDS910554 1737 - 0.55901
ybhR SC0812 putative ABC superfamily (membrane) transport proteinchromosome CDS908209 1107 - 0.524842
ybhS SC0813 putative ABC superfamily (membrane) transport proteinchromosome CDS909431 1131 - 0.541114
ybjR SC0886 putative aminidasechromosome CDS990709 831 + 0.577617
ybjZ SC0897 putative ABC superfamily (atp&memb) transport proteinchromosome CDS1004748 1947 + 0.542373
ycfV SC1168 ABC transporter, ATP-binding proteinchromosome CDS1285234 702 + 0.547009
ycgQ SC1793 putative homologs of microcin C7 resistance protein MccFchromosome CDS1913971 909 + 0.563256
ydhE SC1444 multidrug efflux protein NorAchromosome CDS1539650 1374 - 0.535662
ydhJ SC1461 putative multidrug resistance efflux pumpchromosome CDS1556274 903 - 0.502769
yeeO SC2021 putative MATE family transport proteinchromosome CDS2116117 1527 - 0.526523
yegN SC2130 paral putative outer membrane receptorchromosome CDS2227998 3123 + 0.584054
yegO SC2131 putative resistance protein (efflux transporter), outer membranechromosome CDS2231121 3081 + 0.568322
yfeW SC2474 hypothetical proteinchromosome CDS2601752 1299 + 0.461124
yhcQ SC3303 putative membrane located multidrug resistance proteinchromosome CDS3486704 933 - 0.566988
yhhJ SC3514 putative ABC superfamily (atp_bind/membrane) transport proteinchromosome CDS3705961 1125 - 0.544889
yhiH SC3515 putative ABC-type multidrug transport system, ATPase component; Permease component of an ABC-transporterchromosome CDS3707085 2742 - 0.577316
yohC SC2185 paral putative transport proteinchromosome CDS2289153 540 - 0.551852
 
Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
blaCMY-2-1 SNSL254_pSN254_0086 CMY-2 beta-lactamase 1pSN254 CDS68817 1230 - 0.53252
blaCMY-2-2 SNSL254_pSN254_0089 CMY-2 beta-lactamase 2pSN254 CDS72283 1230 + 0.53252
strB SNSL254_pSN254_0045 streptomycin resistance protein StrBpSN254 CDS29879 831 - 0.56077
 
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPA0391 hypothetical proteinchromosome CDS461600 1299 - 0.461894
NA SPA2550 putative type I secretion protein, ATP-binding proteinchromosome CDS2658327 2181 + 0.568088
NA SPA4078 putative type-1 secretion proteinchromosome CDS4251116 2067 + 0.352201
NA SPA4317 hypothetical proteinchromosome CDS4492546 876 + 0.518265
acrB SPA2247 acriflavin resistance protein Bchromosome CDS2341063 3150 + 0.543492
acrD SPA0388 putative efflux pumpchromosome CDS454005 3114 - 0.552987
acrF SPA3258 RND family, multidrug transport protein, acriflavin resistance protein Fchromosome CDS3368795 3114 + 0.509313
ampD SPA0150 AmpD protein (anhydro-N-acetylmuramyl-tripeptide amidase)chromosome CDS172584 564 + 0.553191
ampE SPA0151 AmpE proteinchromosome CDS173144 855 + 0.552047
ampH SPA2348 penicillin-binding protein AmpHchromosome CDS2443028 1158 + 0.529361
creD SPA4400 inner membrane protein CreDchromosome CDS4574206 1350 + 0.53037
dinF SPA4055 putative DNA-damage-inducible membrane proteinchromosome CDS4214807 1326 + 0.570136
emrA SPA2672 multidrug resistance protein Achromosome CDS2777605 1173 + 0.546462
fhlA SPA2717 transcriptional activator of the formate hydrogenlyase systemchromosome CDS2819128 2079 + 0.548822
hsdM SPA4346 DNA methylase M, host modificationchromosome CDS4519391 1587 - 0.563957
hsdR SPA4347 subunit R of type I restriction-modification systemchromosome CDS4521135 3510 - 0.553846
hsdS SPA4345 subunit S of type I restriction-modification systemchromosome CDS4518006 1389 - 0.426206
iroC SPA2630 putative ABC transporter proteinchromosome CDS2733395 3657 + 0.590101
mdlA SPA2262 putative ABC transporter ATP-binding membrane proteinchromosome CDS2354569 1773 - 0.558376
mdlB SPA2261 putative ABC transporter ATP-binding membrane proteinchromosome CDS2352795 1782 - 0.576319
mrr SPA4348 mrr restriction system proteinchromosome CDS4524842 915 + 0.526776
msbA SPA1814 probable transport ATP-binding protein MsbAchromosome CDS1880307 1749 - 0.515723
res SPA2365 DNA restriction (DNA helicasechromosome CDS2464781 2970 - 0.490909
sapB SPA1191 peptide transport system permease protein SapBchromosome CDS1260483 966 - 0.52588
sapC SPA1182 peptide transport system permease protein SapCchromosome CDS1255182 891 - 0.575758
sapD SPA1181 peptide transport system ATP-binding protein SapDchromosome CDS1254190 993 - 0.524673
sapF SPA1180 peptide transport system ATP-binding protein SapFchromosome CDS1253382 807 - 0.532838
steD SPA2815 fimbrial subunitchromosome CDS2916601 501 + 0.56487
stkD SPA0182 putative fimbrial proteinchromosome CDS210264 573 - 0.464223
uppP SPA3073 undecaprenyl pyrophosphate phosphatasechromosome CDS3181026 822 - 0.53528
yadG SPA0175 hypothetical ABC transporter ATP-binding proteinchromosome CDS204458 927 + 0.495146
yadH SPA0176 ABC transporter integral membrane proteinchromosome CDS205381 771 + 0.546044
yajD SPA2312 hypothetical proteinchromosome CDS2406142 348 - 0.494253
ybhF SPA1936 hypothetical ABC transporter ATP-binding proteinchromosome CDS2017174 1737 + 0.563615
ybhR SPA1938 putative inner membrane proteinchromosome CDS2020149 1107 + 0.527552
ybhS SPA1937 putative inner membrane proteinchromosome CDS2018903 1131 + 0.543767
ybjR SPA1868 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS1947153 831 - 0.569194
ybjZ SPA1857 conserved hypothetical ABC transporterchromosome CDS1931998 1947 - 0.542373
ycfV SPA1632 ABC transporter ATP-binding subunitchromosome CDS1694919 702 - 0.555556
ycgQ SPA1073 hypothetical proteinchromosome CDS1142425 915 - 0.563934
ydhE SPA1428 multidrug efflux protein NorAchromosome CDS1508963 1374 + 0.53639
ydhJ SPA1411 putative HlyD-family proteinchromosome CDS1492815 897 + 0.503902
yegN SPA0738 putative RND-family transporter proteinchromosome CDS820144 3123 - 0.582453
yegO SPA0737 putative RND-family transporter proteinchromosome CDS817063 3081 - 0.567673
yhcQ SPA3232 possible exported proteinchromosome CDS3338492 933 - 0.560557
yhhJ SPA3436 putative ABC superfamily (atp_bind/membrane) transport proteinchromosome CDS3542672 1125 - 0.550222
yhiH SPA3437 hypothetical ABC transporter ATP-binding proteinchromosome CDS3543796 2742 - 0.578045
yohC SPA0682 hypothetical proteinchromosome CDS764037 588 + 0.542517
 
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA t2645 putative type I secretion protein, ATP-binding proteinchromosome CDS2731064 2157 + 0.570236
NA t4286 hypothetical proteinchromosome CDS4451268 1950 + 0.545128
NA t1702 ABC transporter ATP-binding subunitchromosome CDS1767123 702 - 0.545584
NA t2072 putative inner membrane proteinchromosome CDS2135313 1131 + 0.541114
NA t0744 putative RND-family transporter proteinchromosome CDS824245 3081 - 0.567997
NA t4168 putative type-1 secretion proteinchromosome CDS4328967 2067 + 0.352201
NA t4547 hypothetical proteinchromosome CDS4699540 876 + 0.507991
NA t1390 hypothetical proteinchromosome CDS1438961 303 + 0.60396
NA t1077 hypothetical proteinchromosome CDS1159817 915 - 0.563934
NA t4259 hypothetical proteinchromosome CDS4426182 570 + 0.521053
NA t0871 hypothetical proteinchromosome CDS970921 2961 - 0.41101
NA t0862 putative inner membrane proteinchromosome CDS951362 1458 + 0.53155
NA t2073 putative inner membrane proteinchromosome CDS2136559 1107 + 0.529359
NA t0381 hypothetical proteinchromosome CDS455340 1299 - 0.461894
NA t2002 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS2062860 831 - 0.574007
NA t1310 putative HlyD-family proteinchromosome CDS1372991 870 - 0.498851
NA t3936 hypothetical ABC transporter ATP-binding proteinchromosome CDS4074939 2742 + 0.578045
acrB t2385 acriflavin resistance protein Bchromosome CDS2455843 3150 + 0.541905
acrD t0378 putative efflux pumpchromosome CDS447848 3114 - 0.556519
ampD t0152 anhydro-N-acetylmuramyl-tripeptide amidasechromosome CDS172492 564 + 0.551418
ampE t0153 AmpE proteinchromosome CDS173052 855 + 0.554386
ampH t2489 penicillin-binding protein AmpHchromosome CDS2559577 1158 + 0.535406
creD t4629 inner membrane protein CreDchromosome CDS4780941 1350 + 0.526667
dinF t4144 putative DNA-damage-inducible membrane proteinchromosome CDS4289808 1326 + 0.569382
emrA t2711 multidrug resistance protein Achromosome CDS2800530 1173 + 0.546462
fhlA t2761 transcriptional activator of the formate hydrogenlyase systemchromosome CDS2842453 2079 + 0.547379
hsdR t4576 subunit R of type I restriction-modification systemchromosome CDS4728052 3510 - 0.553561
hsdS t4574 subunit S of type I restriction-modification systemchromosome CDS4724923 1389 - 0.425486
iroC t2669 putative ABC transporter proteinchromosome CDS2756502 3657 + 0.589281
mdlA t2399 putative ABC transporter ATP-binding membrane proteinchromosome CDS2469703 1773 - 0.55612
mdlB t2398 putative ABC transporter ATP-binding membrane proteinchromosome CDS2467929 1782 - 0.579125
mrr t4577 mrr restriction system proteinchromosome CDS4731759 915 + 0.527869
msbA t1950 probable transport ATP-binding protein MsbAchromosome CDS1998383 1749 - 0.51801
sapB t1598 peptide transport system permease protein SapBchromosome CDS1656717 966 + 0.528986
sapC t1608 peptide transport system permease protein SapCchromosome CDS1661741 891 + 0.573513
sapD t1609 peptide transport system ATP-binding protein SapDchromosome CDS1662631 993 + 0.522659
sapF t1610 peptide transport system ATP-binding protein SapFchromosome CDS1663625 807 + 0.534077
steD t2859 fimbrial subunitchromosome CDS2939038 507 + 0.564103
uppP t3125 undecaprenyl pyrophosphate phosphatasechromosome CDS3213563 822 - 0.538929
yadG t0178 hypothetical ABC transporter ATP-binding proteinchromosome CDS204360 927 + 0.498382
yadH t0177 ABC transporter integral membrane proteinchromosome CDS205283 771 + 0.54345
yajD t2452 hypothetical proteinchromosome CDS2521988 348 - 0.494253
ybhF t2071 hypothetical ABC transporter ATP-binding proteinchromosome CDS2133584 1737 + 0.559586
ybjZ t1991 conserved hypothetical ABC transporterchromosome CDS2047706 1947 - 0.543914
ydhE t1293 multidrug efflux protein NorAchromosome CDS1356368 1374 - 0.537118
yegN t0745 putative RND-family transporter proteinchromosome CDS827326 3123 - 0.582453
yhcQ t3280 possible exported proteinchromosome CDS3371065 933 - 0.563773
yohC t0686 hypothetical proteinchromosome CDS771128 588 + 0.547619
 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA HCM2.0092 hypothetical proteinpHCM2 CDS74068 246 + 0.52439
NA HCM1.177 hypothetical proteinpHCM1 CDS130242 450 + 0.451111
NA STY2716 hypothetical proteinchromosome CDS2548075 1299 + 0.461894
NA STY4853 hypothetical proteinchromosome CDS4716616 876 + 0.507991
NA HCM1.27c hypothetical proteinpHCM1 CDS9003 525 - 0.485714
NA STY0850 putative inner membrane proteinchromosome CDS843412 1107 - 0.529359
NA STY1928 hypothetical proteinchromosome CDS1820401 915 + 0.563934
NA STY4561 hypothetical proteinchromosome CDS4441532 570 + 0.521053
NA STY0927 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS917387 831 + 0.574007
NA STY1598 hypothetical proteinchromosome CDS1541402 303 - 0.60396
NA STY2216 putative inner membrane proteinchromosome CDS2051109 1458 - 0.530864
NA STY4224 hypothetical ABC transporter ATP-binding proteinchromosome CDS4090292 2742 + 0.578045
NA STY0851 putative inner membrane proteinchromosome CDS844634 1131 - 0.54023
NA STY1680 putative HlyD-family proteinchromosome CDS1607276 870 + 0.498851
NA STY4592 hypothetical proteinchromosome CDS4467675 1950 + 0.545128
NA STY2341 putative RND-family transporter proteinchromosome CDS2176611 3081 + 0.567673
NA HCM2.0050c hypothetical proteinpHCM2 CDS37229 324 - 0.493827
NA STY4460 putative type-1 secretion proteinchromosome CDS4344317 2067 + 0.352201
NA STY2074 hypothetical proteinchromosome CDS1930637 1053 + 0.483381
NA STY1258 ABC transporter ATP-binding subunitchromosome CDS1213359 702 + 0.545584
NA STY2877 putative type I secretion protein, ATP-binding proteinchromosome CDS2755839 2157 + 0.570236
NA HCM1.182 hypothetical proteinpHCM1 CDS134029 351 + 0.45584
acrB STY0519 acriflavin resistance protein Bchromosome CDS522109 3150 - 0.541905
acrD STY2719 putative efflux pumpchromosome CDS2553752 3114 + 0.556519
ampD STY0168 AmpD protein (anhydro-N-acetylmuramyl-tripeptide amidase)chromosome CDS172501 564 + 0.551418
ampE STY0169 AmpE proteinchromosome CDS173061 855 + 0.554386
ampH STY0407 penicillin-binding protein AmpHchromosome CDS420379 1158 - 0.535406
bla HCM1.216 beta-lactamasepHCM1 CDS161911 861 + 0.491289
cat HCM1.206 chloramphenicol acetyltransferasepHCM1 CDS154527 660 + 0.44697
creD STY4937 inner membrane protein CreDchromosome CDS4798017 1350 + 0.526667
dinF STY4434 putative DNA-damage-inducible membrane proteinchromosome CDS4305158 1326 + 0.569382
emrA STY2940 multidrug resistance protein Achromosome CDS2814673 1173 + 0.546462
fhlA STY2981 transcriptional activator of the formate hydrogenlyase systemchromosome CDS2856596 2079 + 0.547379
hsdR STY4884 subunit R of type I restriction-modification systemchromosome CDS4745128 3510 - 0.553561
hsdS STY4881 subunit S of type I restriction-modification systemchromosome CDS4741999 1389 - 0.425486
iroC STY2891 putative ABC transporter proteinchromosome CDS2770645 3657 + 0.589281
mdlA STY0503 putative ABC transporter ATP-binding membrane proteinchromosome CDS509626 1773 + 0.555556
mdlB STY0504 putative ABC transporter ATP-binding membrane proteinchromosome CDS511391 1782 + 0.579125
merC HCM1.157 putative mercury transport proteinpHCM1 CDS115742 426 + 0.619718
mrr STY4885 mrr restriction system proteinchromosome CDS4748835 915 + 0.527869
msbA STY0985 probable transport ATP-binding protein MsbAchromosome CDS980946 1749 + 0.51801
sapB STY1368 peptide transport system permease protein SapBchromosome CDS1323500 966 - 0.528986
sapC STY1357 peptide transport system permease protein SapCchromosome CDS1318552 891 - 0.573513
sapD STY1356 peptide transport system ATP-binding protein SapDchromosome CDS1317560 993 - 0.522659
sapF STY1355 peptide transport system ATP-binding protein SapFchromosome CDS1316752 807 - 0.532838
steD STY3088 fimbrial subunitchromosome CDS2953143 507 + 0.564103
strB HCM1.224 streptomycin phosphotransferasepHCM1 CDS167667 837 + 0.55914
uppP STY3384 undecaprenyl pyrophosphate phosphatasechromosome CDS3228068 822 - 0.538929
yadG STY0194 hypothetical ABC transporter ATP-binding proteinchromosome CDS204369 927 + 0.499461
yadH STY0195 ABC transporter integral membrane proteinchromosome CDS205292 771 + 0.54345
yajD STY0449 hypothetical proteinchromosome CDS458765 348 + 0.494253
ybhF STY0852 hypothetical ABC transporter ATP-binding proteinchromosome CDS845757 1737 - 0.559586
ybjZ STY0938 conserved hypothetical ABC transporterchromosome CDS931425 1947 + 0.543914
ydhE STY1697 multidrug efflux protein NorAchromosome CDS1623395 1374 + 0.537118
yegN STY2340 putative RND-family transporter proteinchromosome CDS2173488 3123 + 0.582453
yhcQ STY3546 possible exported proteinchromosome CDS3385571 933 - 0.563773
yohC STY2399 hypothetical proteinchromosome CDS2232222 588 - 0.547619
 
Salmonella typhimurium LT2, SGSC1412
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
repC PSLT003 DNA replication proteinpSLT CDS1334 267 + 0.400749
 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_4158 putative type I restriction enzyme R proteinchromosome CDS4206978 3414 + 0.509959
NA SBO_1219 hypothetical proteinchromosome CDS1215318 759 - 0.499341
NA SBO_0800 putative regulatorchromosome CDS807718 831 + 0.56077
NA SBO_4358 hypothetical proteinchromosome CDS4409316 873 - 0.485682
NA SBO_4160 putative type I restriction-modification system specificity subunitchromosome CDS4212098 1071 + 0.353875
NA SBO_0755 putative phage-related proteinchromosome CDS771438 864 + 0.321759
NA SBO_4159 putative type I restriction enzyme M proteinchromosome CDS4210455 1635 + 0.508869
NA SBO_1491 hypothetical proteinchromosome CDS1468691 900 - 0.496667
NA SBO_1879 hypothetical proteinchromosome CDS1862421 915 + 0.52459
acrB SBO_0362 acridine efflux pumpchromosome CDS374565 3150 - 0.53619
acrF SBO_3260 integral transmembrane proteinchromosome CDS3263267 3105 + 0.513366
ampC SBO_4306 beta-lactamasechromosome CDS4355147 1134 + 0.505291
ampD SBO_0099 AmpDchromosome CDS107393 552 + 0.541667
ampE SBO_0100 AmpEchromosome CDS107941 855 + 0.520468
bacA SBO_2913 BacAchromosome CDS2917932 822 - 0.529197
creD SBO_4463 tolerance to colicin E2chromosome CDS4516349 1353 + 0.495935
dinF SBO_4073 DNA-damage-inducible protein Fchromosome CDS4114538 1380 - 0.554348
emrA SBO_2832 multidrug resistance secretion proteinchromosome CDS2839136 1173 - 0.529412
emrK SBO_2394 multidrug resistance protein Kchromosome CDS2384108 1164 - 0.418385
mdlA SBO_0342 ATP-binding component of a transport systemchromosome CDS357719 1662 + 0.534296
mdlB SBO_0344 putative ATP-binding component of a transport systemchromosome CDS360927 1782 + 0.558923
msbA SBO_2202 ATP-binding transport proteinchromosome CDS2182576 1749 + 0.50829
sapB SBO_1769 SapBchromosome CDS1746853 966 + 0.514493
sapC SBO_1770 SapCchromosome CDS1747805 891 + 0.566779
sapD SBO_1771 putative ATP-binding protein of peptide transport systemchromosome CDS1748695 993 + 0.511581
sapF SBO_1772 putative ATP-binding protein of peptide transport systemchromosome CDS1749689 807 + 0.513011
yadG SBO_0116 putative ATP-binding component of a transport systemchromosome CDS130978 927 + 0.491909
yadH SBO_0117 hypothetical proteinchromosome CDS131901 771 + 0.511025
yaiH SBO_0271 putative enzymechromosome CDS284301 1158 - 0.550086
yajD SBO_0304 hypothetical proteinchromosome CDS319576 348 + 0.468391
ybhF SBO_0682 putative ATP-binding component of a transport systemchromosome CDS694034 1737 - 0.548071
ybhR SBO_0680 hypothetical proteinchromosome CDS691791 1107 - 0.524842
ybhS SBO_0681 hypothetical proteinchromosome CDS692908 1134 - 0.550265
ybjZ SBO_0812 putative ATP-binding component of a transport systemchromosome CDS823151 1947 + 0.538264
ycfV SBO_1944 putative ATP-binding component of a transport systemchromosome CDS1917218 687 - 0.550218
ydhE SBO_1468 putative transport proteinchromosome CDS1444162 1374 - 0.529112
yegN SBO_0901 hypothetical proteinchromosome CDS925632 3123 + 0.56324
yegO SBO_0902 hypothetical proteinchromosome CDS928755 3078 + 0.561728
yhhJ SBO_3480 putative transporterchromosome CDS3469190 1128 - 0.546099
yhiH SBO_3481 putative ATP-binding component of a transport system, fragment 1chromosome CDS3470314 2685 - 0.565736
yhiV SBO_3513 putative transport system permease proteinchromosome CDS3505980 3114 + 0.529865
yibH SBO_3595 hypothetical proteinchromosome CDS3609392 1137 - 0.528584
yjcR SBO_4113 hypothetical proteinchromosome CDS4158892 1032 - 0.556202
 
Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SDY_2396 putative regulatorchromosome CDS2201259 831 - 0.56438
NA SDY_0419 hypothetical proteinchromosome CDS400720 213 - 0.568075
NA SDY_1867 hypothetical proteinchromosome CDS1700723 900 + 0.496667
NA SDY_1372 putative multidrug-efflux transport proteinchromosome CDS1267290 3102 + 0.514184
NA SDY_2249 hypothetical proteinchromosome CDS2048510 849 + 0.482921
NA SDY_0417 putative cytoplasmic membrane export proteinchromosome CDS398772 1527 - 0.572364
NA SDY_P085 hypothetical proteinpSD1_197 CDS70236 291 - 0.419244
NA SDY_1232 hypothetical proteinchromosome CDS1138793 915 - 0.53224
NA SDY_2248 hypothetical proteinchromosome CDS2048019 501 + 0.491018
NA SDY_0418 hypothetical proteinchromosome CDS400306 372 - 0.567204
acrB SDY_0457 acridine efflux pumpchromosome CDS448942 3150 + 0.536825
acrD SDY_2654 AcrDchromosome CDS2446438 3114 + 0.542389
acrF_1 SDY_3443 N-terminal fragment of integral transmembrane protein involved with acridine resistancechromosome CDS3198529 1710 + 0.508772
ampC SDY_4394 beta-lactamasechromosome CDS4111751 1134 - 0.506173
ampD SDY_0140 regulates ampCchromosome CDS139265 552 + 0.539855
ampE SDY_0141 regulates ampCchromosome CDS139813 855 + 0.518129
dinF SDY_4530 DNA-damage-inducible protein Fchromosome CDS4237060 1380 - 0.551449
dinI SDY_2092 damage-inducible protein Ichromosome CDS1900752 246 + 0.48374
emrA SDY_2880 multidrug resistance secretion proteinchromosome CDS2663416 1173 + 0.531969
emrK SDY_2563 multidrug resistance protein Kchromosome CDS2358987 1164 - 0.416667
iroC SDY_1025 putative ABC transporter proteinchromosome CDS968581 3660 - 0.578962
mdlA SDY_0385 ATP-binding component of a transport systemchromosome CDS369151 1773 + 0.538635
mdlB SDY_0386 putative ATP-binding component of a transport systemchromosome CDS370916 1782 + 0.558361
msbA SDY_2344 ATP-binding transport proteinchromosome CDS2134836 1749 - 0.510577
sapB SDY_1639 SapBchromosome CDS1498420 966 + 0.509317
sapC SDY_1379 SapCchromosome CDS1276238 891 - 0.563412
sapD SDY_1378 putative ATP-binding protein of peptide transport systemchromosome CDS1275246 993 - 0.510574
sapF SDY_1377 putative ATP-binding protein of peptide transport systemchromosome CDS1274438 807 - 0.511772
yadG SDY_0036 putative ATP-binding component of a transport systemchromosome CDS33572 927 + 0.494067
yadH SDY_0037 hypothetical proteinchromosome CDS34495 771 + 0.512322
yaiH SDY_0370 putative enzymechromosome CDS357316 1170 + 0.547009
yajD SDY_0324 hypothetical proteinchromosome CDS312957 348 - 0.471264
ybhF SDY_0809 putative ATP-binding component of a transport systemchromosome CDS755456 1752 + 0.554224
ybhR SDY_0811 hypothetical proteinchromosome CDS758344 1107 + 0.524842
ybhS SDY_0810 hypothetical proteinchromosome CDS757200 1134 + 0.549383
ybjZ SDY_2382 putative ATP-binding component of a transport systemchromosome CDS2184371 1953 - 0.535586
ycfV SDY_2033 putative ATP-binding component of a transport systemchromosome CDS1842660 687 - 0.556041
ydhE SDY_1890 putative transport proteinchromosome CDS1724517 1374 + 0.532023
yhcQ SDY_3417 hypothetical proteinchromosome CDS3172213 933 - 0.538049
yhiV SDY_3537 putative transport system permease proteinchromosome CDS3271688 3120 - 0.530769
 
Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S0863 putative regulatorchromosome CDS848966 831 + 0.559567
NA S1739 putative integrasechromosome CDS1673009 789 - 0.525982
NA S1439 putative secretion proteinchromosome CDS1402582 648 + 0.445988
NA S1271 hypothetical proteinchromosome CDS1230562 915 - 0.526776
NA S1226 putative holin protein of prophage CP-933Cchromosome CDS1188896 213 + 0.492958
NA S4635 hypothetical proteinchromosome CDS4526799 1656 - 0.405797
NA S1443 putative secretion proteinchromosome CDS1404902 396 + 0.492424
NA S1803 hypothetical proteinchromosome CDS1738947 867 + 0.49827
acrB S0414 acriflavine resistance proteinchromosome CDS417586 3150 - 0.537778
acrD S2663 multidrug resistance proteinchromosome CDS2553786 3114 + 0.542389
ampC S4573 beta-lactamasechromosome CDS4474391 1134 - 0.506173
ampD S0109 AmpD proteinchromosome CDS116484 552 + 0.538043
ampE S0110 AmpE proteinchromosome CDS117032 855 + 0.521637
creD S4703 inner membrane protein CreDchromosome CDS4595881 1353 + 0.495935
dinF S3570 DNA-damage-inducible protein Fchromosome CDS3439590 1380 + 0.554348
emrK S2572 multidrug resistance protein Kchromosome CDS2463378 1164 - 0.414948
mdlA S0399 ATP-binding component of a transport systemchromosome CDS403765 1773 + 0.541455
mdlB S0400 putative ATP-binding component of a transport systemchromosome CDS405530 1782 + 0.554994
msbA S0974 ATP-binding transport protein; multicopy suppressor of htrBchromosome CDS954375 1749 + 0.507719
sapB S1380 peptide transport permease proteinchromosome CDS1348643 966 - 0.509317
sapC S1379 peptide transport permease proteinchromosome CDS1347766 891 - 0.565657
sapD S1378 putative ATP-binding protein of peptide transport systemchromosome CDS1346774 993 - 0.50856
sapF S1377 putative ATP-binding protein of peptide transport systemchromosome CDS1345966 807 - 0.506815
uppP S3303 undecaprenyl pyrophosphate phosphatasechromosome CDS3181079 822 - 0.525547
yadG S0126 putative ATP-binding component of a transport systemchromosome CDS140361 927 + 0.488673
yadH S0127 hypothetical proteinchromosome CDS141284 771 + 0.509728
yaiH S0259 putative enzymechromosome CDS263399 1158 + 0.547496
yajD S0355 hypothetical proteinchromosome CDS359238 348 + 0.465517
ybhF S0785 putative ATP-binding component of a transport systemchromosome CDS766229 1752 - 0.550228
ybhR S0783 hypothetical proteinchromosome CDS763986 1107 - 0.523939
ybhS S0784 hypothetical proteinchromosome CDS765103 1134 - 0.549383
ybjZ S0879 putative ATP-binding component of a transport systemchromosome CDS866473 1947 + 0.541346
ycfV S1201 putative ATP-binding component of a transport systemchromosome CDS1167253 702 + 0.545584
ydhE S1823 multidrug efflux protein NorAchromosome CDS1762736 1374 + 0.52984
yegO S2266 hypothetical proteinchromosome CDS2148042 3066 + 0.57045
yhcQ S3496 hypothetical proteinchromosome CDS3366128 933 - 0.536977
yhhJ S4262 putative transporterchromosome CDS4182556 1125 + 0.546667
yhiH S4261 putative ATP-binding component of a transport systemchromosome CDS4179821 2736 + 0.56652
yibH S4137 hypothetical proteinchromosome CDS4037809 1086 + 0.522099
yigF S3860 hypothetical proteinchromosome CDS3757370 381 + 0.341207
yjcR S3608 hypothetical proteinchromosome CDS3485280 1032 - 0.562984
 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF1671 hypothetical proteinchromosome CDS1699357 867 + 0.49827
NA SF4365 putative restriction modification enzyme M subunit (methylase)chromosome CDS4536301 1506 - 0.501328
NA CP0215 hypothetical proteinpCP301 CDS176551 291 - 0.419244
NA SF1182 hypothetical proteinchromosome CDS1227664 897 - 0.531773
NA SF1143 putative holin protein of prophage CP-933Cchromosome CDS1186003 213 + 0.492958
NA CP0083 hypothetical proteinpCP301 CDS69660 291 + 0.42268
NA SF0822 putative regulatorchromosome CDS854149 831 + 0.558363
NA SF1608 putative integrasechromosome CDS1633380 1038 - 0.514451
NA SF1348 hypothetical proteinchromosome CDS1396006 366 + 0.478142
NA SF4366 Type I restriction enzyme EcoAI R protein (R.EcoAI)chromosome CDS4537837 2433 - 0.495684
NA SF3597 acriflavine resistance proteinchromosome CDS3699581 945 - 0.540741
NA SF3598 acriflavine resistance proteinchromosome CDS3700610 2085 - 0.522302
NA SF4364 hypothetical proteinchromosome CDS4534640 1662 - 0.404332
acrB SF0407 acriflavine resistance proteinchromosome CDS417785 3150 - 0.537778
acrD SF2512 multidrug resistance proteinchromosome CDS2575653 3114 + 0.542389
ampC SF4308 beta-lactamasechromosome CDS4482198 1134 - 0.506173
ampD SF0107 AmpD proteinchromosome CDS116997 552 + 0.538043
ampE SF0108 AmpE proteinchromosome CDS117545 855 + 0.521637
creD SF4432 inner membrane protein CreDchromosome CDS4603730 1353 + 0.495935
dinF SF4161 DNA-damage-inducible protein Fchromosome CDS4330661 1380 - 0.554348
emrK SF2435 multidrug resistance protein Kchromosome CDS2485239 1164 - 0.414948
mdlA SF0393 ATP-binding component of a transport systemchromosome CDS403964 1773 + 0.541455
mdlB SF0394 putative ATP-binding component of a transport systemchromosome CDS405729 1782 + 0.554994
msbA SF0910 ATP-binding transport protein; multicopy suppressor of htrBchromosome CDS950406 1749 + 0.507719
sapB SF1298 peptide transport permease proteinchromosome CDS1348777 966 - 0.509317
sapC SF1297 peptide transport permease proteinchromosome CDS1347900 891 - 0.565657
sapD SF1296 putative ATP-binding protein of peptide transport systemchromosome CDS1346908 993 - 0.50856
sapF SF1295 putative ATP-binding protein of peptide transport systemchromosome CDS1346100 807 - 0.506815
uppP SF3098 undecaprenyl pyrophosphate phosphatasechromosome CDS3192417 822 - 0.525547
yadG SF0124 putative ATP-binding component of a transport systemchromosome CDS140870 927 + 0.488673
yadH SF0125 hypothetical proteinchromosome CDS141793 771 + 0.509728
yaiH SF0237 putative enzymechromosome CDS260070 1158 + 0.547496
yajD SF0347 hypothetical proteinchromosome CDS360103 348 + 0.465517
ybhF SF0744 putative ATP-binding component of a transport systemchromosome CDS770072 1752 - 0.550799
ybhR SF0742 hypothetical proteinchromosome CDS767829 1107 - 0.523939
ybhS SF0743 hypothetical proteinchromosome CDS768946 1134 - 0.549383
ybjZ SF0839 putative ATP-binding component of a transport systemchromosome CDS871660 1947 + 0.541346
ycfV SF1121 putative ATP-binding component of a transport systemchromosome CDS1164360 702 + 0.545584
yegO SF2141 hypothetical proteinchromosome CDS2165180 3066 + 0.570776
yhcQ SF3281 hypothetical proteinchromosome CDS3376046 933 - 0.536977
yhhJ SF3501 putative transporterchromosome CDS3590323 1125 - 0.546667
yhiH SF3502 putative ATP-binding component of a transport systemchromosome CDS3591447 2736 - 0.56652
yibH SF3631 hypothetical proteinchromosome CDS3736323 1086 - 0.522099
yigF SF3895 hypothetical proteinchromosome CDS4015561 381 - 0.341207
yjcR SF4142 hypothetical proteinchromosome CDS4313095 1032 - 0.562984
 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_0855 putative regulatorchromosome CDS889581 831 + 0.559567
NA SFV_4365 hypothetical proteinchromosome CDS4501716 1662 - 0.404332
NA SFV_1822 putative secretion proteinchromosome CDS1870993 648 - 0.445988
NA SFV_1820 putative secretion proteinchromosome CDS1868924 396 - 0.492424
NA SFV_2057 hypothetical proteinchromosome CDS2078627 501 - 0.493014
NA SFV_1201 hypothetical proteinchromosome CDS1244346 915 - 0.526776
ampD SFV_0101 regulates ampCchromosome CDS116667 552 + 0.538043
ampE SFV_0102 regulates ampCchromosome CDS117215 855 + 0.521637
bacA SFV_3097 undecaprenyl pyrophosphate phosphatasechromosome CDS3164268 822 - 0.525547
creD SFV_4434 tolerance to colicin E2chromosome CDS4570811 1353 + 0.495935
emrK SFV_2427 multidrug resistance protein Kchromosome CDS2478978 1164 - 0.414948
mdlB SFV_0423 putative ATP-binding component of a transport systemchromosome CDS443380 1782 + 0.555556
msbA SFV_0915 ATP-binding transport proteinchromosome CDS957344 1749 + 0.507719
sapD SFV_1305 putative ATP-binding protein of peptide transport systemchromosome CDS1360838 993 - 0.50856
sapF SFV_1304 putative ATP-binding protein of peptide transport systemchromosome CDS1360030 807 - 0.506815
yadH SFV_0119 hypothetical proteinchromosome CDS141468 771 + 0.511025
yaiH SFV_0339 putative enzymechromosome CDS357158 1158 - 0.548359
yajD SFV_0375 hypothetical proteinchromosome CDS394202 348 + 0.465517
ybhS SFV_0776 hypothetical proteinchromosome CDS804926 1134 - 0.549383
ycfV SFV_1137 putative ATP-binding component of a transport systemchromosome CDS1182455 687 + 0.550218
yhcQ SFV_3268 hypothetical proteinchromosome CDS3338723 933 - 0.535906
yhhJ SFV_3486 putative transporterchromosome CDS3550734 1125 - 0.546667
yigF SFV_3681 hypothetical proteinchromosome CDS3767721 381 + 0.341207
 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSON_0853 putative regulatorchromosome CDS904194 831 + 0.56077
NA SSO_P158 hypothetical proteinpSS_046 CDS139608 291 - 0.415808
NA SSON_2519 putative beta-lactamasechromosome CDS2656953 1392 + 0.51796
NA SSON_2781 putative DNasechromosome CDS2932771 351 - 0.575499
NA SSON_1512 hypothetical proteinchromosome CDS1589793 900 - 0.501111
NA SSON_1185 hypothetical proteinchromosome CDS1265442 915 - 0.535519
acrB SSON_0449 acridine efflux pumpchromosome CDS473448 3150 - 0.538095
acrD SSON_2550 AcrDchromosome CDS2689662 3114 + 0.543674
ampC SSON_4336 beta-lactamase; penicillin resistancechromosome CDS4604316 1134 - 0.505291
ampD SSON_0118 regulates ampCchromosome CDS127961 552 + 0.539855
ampE SSON_0119 regulates ampCchromosome CDS128509 855 + 0.523977
bacA SSON_3194 possible phosphorylates undecaprenolchromosome CDS3357540 822 - 0.527981
creD SSON_4550 inner membrane proteinchromosome CDS4821791 1353 + 0.495196
dinF SSON_4224 DNA-damage-inducible protein Fchromosome CDS4482165 1380 + 0.553623
emrA SSON_2829 multidrug resistance secretion proteinchromosome CDS2972651 1173 + 0.531117
emrK SSON_2459 multidrug resistance protein Kchromosome CDS2595344 1164 - 0.419244
mdlA SSON_0436 ATP-binding component of a transport systemchromosome CDS461068 1773 + 0.539763
mdlB SSON_0437 putative ATP-binding component of a transport systemchromosome CDS462833 1782 + 0.558923
msbA SSON_0916 ATP-binding transport proteinchromosome CDS982328 1749 + 0.507719
sapB SSON_1847 peptide transport permease protein-like proteinchromosome CDS1944063 966 + 0.514493
sapC SSON_1848 peptide transport permease protein-like proteinchromosome CDS1945015 891 + 0.567901
sapD SSON_1849 putative ATP-binding protein of peptide transport systemchromosome CDS1945905 993 + 0.512588
sapF SSON_1850 putative ATP-binding protein of peptide transport systemchromosome CDS1946899 807 + 0.511772
yadG SSON_0135 putative ATP-binding component of a transport systemchromosome CDS151755 927 + 0.491909
yadH SSON_0136 hypothetical proteinchromosome CDS152678 771 + 0.507134
yaiH SSON_0351 putative enzymechromosome CDS377935 1158 - 0.549223
yajD SSON_0387 hypothetical proteinchromosome CDS415699 348 + 0.471264
ybhF SSON_0773 putative ATP-binding component of a transport systemchromosome CDS816115 1737 - 0.549223
ybhR SSON_0771 hypothetical proteinchromosome CDS813872 1107 - 0.523939
ybhS SSON_0772 hypothetical proteinchromosome CDS814989 1134 - 0.55291
ybjZ SSON_0866 putative ATP-binding component of a transport systemchromosome CDS919845 1947 + 0.538778
ycfV SSON_1137 putative ATP-binding component of a transport systemchromosome CDS1217944 687 + 0.556041
ydhE SSON_1493 putative transport proteinchromosome CDS1567147 1374 - 0.527656
yeeO SSON_2044 hypothetical proteinchromosome CDS2143072 1641 + 0.484461
yegN SSON_2127 hypothetical proteinchromosome CDS2227294 3123 + 0.563881
yegO SSON_2128 hypothetical proteinchromosome CDS2230417 3078 + 0.565302
yhcQ SSON_3383 hypothetical proteinchromosome CDS3561325 933 - 0.534834
yhhJ SSON_3721 putative transporterchromosome CDS3897080 1128 - 0.547872
yhiH SSON_3722 putative ATP-binding component of a transport system, fragment 1chromosome CDS3898204 2685 - 0.565363
yhiV SSON_3572 putative transport system permease proteinchromosome CDS3741708 3114 - 0.529544
yibH SSON_3812 hypothetical proteinchromosome CDS4002727 1164 + 0.524055
yjcR SSON_4263 hypothetical proteinchromosome CDS4528510 1032 - 0.560078
 
Sodalis glossinidius str. morsitans, morsitans
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SG1459 putative ABC transporter ATP-binding componentchromosome CDS2440518 1962 + 0.59633
NA SG1512 peptide ABC transporter ATP-binding componentchromosome CDS2545810 921 + 0.575461
NA SG0485 ABC transporter permease componentchromosome CDS843255 771 + 0.544747
NA SG0484 ABC transporter ATP-binding componentchromosome CDS842326 933 + 0.558414
NA SG1392 hypothetical proteinchromosome CDS2310344 441 + 0.498866
NA SG0782 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS1309071 855 + 0.549708
NA SG2359 hypothetical proteinchromosome CDS4049031 354 - 0.488701
NA SG0726 hypothetical proteinchromosome CDS1211675 339 - 0.430678
NA SG1643 hypothetical proteinchromosome CDS2807831 339 - 0.59587
NA SG0678 ABC transporter ATP-binding componentchromosome CDS1148643 1776 + 0.587275
NA SG1522 hypothetical proteinchromosome CDS2567393 1059 - 0.439093
NA SG0551 putative invasion proteinchromosome CDS949744 339 + 0.486726
NA SG1077 lipoprotein releasing system ATP-binding protein lolDchromosome CDS1784005 690 + 0.585507
NA SG1511 peptide ABC transporter ATP-binding componentchromosome CDS2544815 993 + 0.577039
NA SG1510 peptide ABC transporter permease componentchromosome CDS2543925 891 + 0.608305
NA SG0995 ABC transporter ATP-binding componentchromosome CDS1639301 1749 + 0.543739
NA SG0103 hypothetical proteinchromosome CDS168193 315 + 0.603175
NA SG0684 acriflavin efflux protein AcrBchromosome CDS1156190 3165 - 0.563981
NA SG0533 putative ABC transporter ATP-binding componentchromosome CDS920742 570 - 0.568421
NA SG0257 bacitracin resistance proteinchromosome CDS472254 822 + 0.552311
NA SG1507 peptide ABC transporter permease component SapBchromosome CDS2529607 966 + 0.57764
NA SG0677 ABC transporter ATP-binding componentchromosome CDS1146881 1779 + 0.598651
NA SG0100 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS165067 777 + 0.474903
NA SG2073 hypothetical proteinchromosome CDS3581677 342 + 0.494152
NA SG0643 putative N-acetylmuramoyl-L-alanine amidasechromosome CDS1105182 606 - 0.519802
 
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
bacA WGLp473 hypothetical proteinchromosome CDS547879 804 + 0.164179
mdl WGLp220 hypothetical proteinchromosome CDS257471 1749 - 0.220698
mdlB WGLp219 hypothetical proteinchromosome CDS255732 1734 - 0.22376
msbA WGLp254 hypothetical proteinchromosome CDS296859 1746 - 0.269759
yadG WGLp280 hypothetical proteinchromosome CDS330636 909 + 0.247525
yadH WGLp281 hypothetical proteinchromosome CDS331550 783 + 0.250319
ycfV WGLp101 hypothetical proteinchromosome CDS108685 690 + 0.223188
 
Yersinia pestis Antiqua, Antiqua
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPA_2924 putative membrane-bound sensory transducer in beta-lactamase regulationchromosome CDS3259051 855 - 0.481871
NA YPA_3897 hypothetical proteinchromosome CDS4386953 2064 - 0.475775
NA YPA_1090 ABC transporter multidrug efflux pump, permease subunitchromosome CDS1243043 1107 - 0.478771
NA YPA_3864 putative multi-drug efflux proteinchromosome CDS4349766 3087 - 0.50988
NA YPA_2984 multidrug efflux proteinchromosome CDS3320693 3126 - 0.522393
NA YPA_2217 hypothetical proteinchromosome CDS2488505 417 - 0.321343
NA YPA_3357 putative integral membrane efflux proteinchromosome CDS3705490 3120 + 0.547115
NA YPA_1109 putative ABC transporter (ATP-binding protein)chromosome CDS1261051 1719 - 0.468877
NA YPA_1612 putative toxin transport proteinchromosome CDS1799793 2139 + 0.509116
NA YPA_1608 hypothetical proteinchromosome CDS1796339 1785 + 0.45042
NA YPA_2628 multidrug efflux proteinchromosome CDS2923831 3153 + 0.492864
NA YPA_0375 hypothetical proteinchromosome CDS438725 1479 + 0.457742
NA YPA_1327 hypothetical proteinchromosome CDS1491394 1293 + 0.528229
NA YPA_3379 ABC-transporter transmembrane proteinchromosome CDS3759052 1773 + 0.475465
NA YPA_1329 ABC transporter, ATP-binding proteinchromosome CDS1493843 714 + 0.473389
NA YPA_1707 peptide transport system ATP-binding proteinchromosome CDS1914666 993 + 0.492447
NA YPA_0655 putative ABC transporter ATP-binding proteinchromosome CDS741998 1950 + 0.515385
NA YPA_1092 ATPasechromosome CDS1245342 1743 - 0.512909
NA YPA_2287 AcrB/AcrD/AcrF family membrane proteinchromosome CDS2564240 3159 + 0.537195
NA YPA_3171 putative HlyD family secretion proteinchromosome CDS3510573 1050 + 0.54
NA YPA_1706 peptide transport system permease proteinchromosome CDS1913776 891 + 0.516274
NA YPA_3698 putative HlyD family secretion proteinchromosome CDS4154263 936 + 0.532051
NA YPA_1839 N-acetylmuramoyl-L-alanine amidasechromosome CDS2063202 765 - 0.416993
NA YPA_0939 putative penicillin-binding proteinchromosome CDS1087432 1167 - 0.497858
NA YPA_1708 peptide transport system ATP-binding proteinchromosome CDS1915658 816 + 0.496324
NA YPA_1328 hypothetical proteinchromosome CDS1492676 1164 + 0.492268
NA YPA_1705 peptide transport system permease proteinchromosome CDS1912824 966 + 0.507246
NA YPA_0867 putative sugar transporterchromosome CDS1003540 1431 + 0.507338
NA YPA_2639 ATP transporter (ATP-binding protein)chromosome CDS2934977 1824 - 0.498904
NA YPA_2758 multidrug resistance protein Achromosome CDS3069781 1173 + 0.497016
NA YPA_1806 N-acetylmuramoyl-L-alanine amidasechromosome CDS2022676 852 - 0.482394
NA YPA_2640 ABC transporter (ATP-binding protein)chromosome CDS2936793 1767 - 0.483305
NA YPA_3380 ABC-transporter transmembrane proteinchromosome CDS3760799 1776 + 0.4375
NA YPA_2234 multidrug efflux proteinchromosome CDS2503447 3132 + 0.512133
NA YPA_2925 putative signalling protein in beta-lactamase regulationchromosome CDS3260195 552 - 0.487319
NA YPA_2288 AcrB/AcrD/AcrF family membrane proteinchromosome CDS2567395 3075 + 0.543415
NA YPA_2908 putative ABC transporter, ATP-binding proteinchromosome CDS3236616 927 - 0.476807
NA YPA_0110 hypothetical proteinchromosome CDS130960 408 + 0.468137
NA YPA_3141 putative bacitracin resistance proteinchromosome CDS3486259 819 - 0.482295
NA YPA_1292 inner membrane ABC-transporter YbtQchromosome CDS1448341 1803 + 0.586245
NA YPA_3896 hypothetical proteinchromosome CDS4385640 1317 - 0.484434
NA YPA_1898 lipoprotein releasing system, ATP-binding proteinchromosome CDS2131989 705 - 0.493617
NA YPA_0686 transport ATP-binding proteinchromosome CDS786897 1749 + 0.465409
NA YPA_1737 putative transport proteinchromosome CDS1948562 1374 + 0.511645
NA YPA_2190 putative ABC transporter, ATP-binding proteinchromosome CDS2455327 2037 + 0.500245
NA YPA_0890 hypothetical proteinchromosome CDS1029195 342 - 0.423977
NA YPA_0793 ABC transporter ATP-binding proteinchromosome CDS913075 669 - 0.384155
NA YPA_2907 putative ABC transporter, integral membrane proteinchromosome CDS3235849 771 - 0.481193
 
Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPO3406 putative ABC transporter, ATP-binding proteinchromosome CDS3804167 927 - 0.476807
NA YPO3029 hypothetical proteinchromosome CDS3383476 417 - 0.321343
NA YPO3000 putative ABC transporter, ATP-binding proteinchromosome CDS3350289 2037 + 0.500245
NA YPO3482 multidrug efflux proteinchromosome CDS3888244 3126 - 0.522393
NA YPO3405 putative ABC transporter, integral membrane proteinchromosome CDS3803400 771 - 0.481193
NA YPO1001 putative integral membrane efflux proteinchromosome CDS1113366 3120 + 0.547115
NA YPO2848 AcrB/AcrD/AcrF family membrane proteinchromosome CDS3180692 3159 + 0.537195
NA YPO1715 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS1958768 852 + 0.482394
NA YPO3912 hypothetical proteinchromosome CDS4394618 408 - 0.468137
NA YPO1683 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS1918291 765 + 0.416993
NA YPO1571 putative sugar transporterchromosome CDS1791609 1431 + 0.507338
NA YPO1365 putative ABC transporter ATP-binding proteinchromosome CDS1532161 1950 + 0.515385
NA YPO1945 hypothetical proteinchromosome CDS2207641 1164 + 0.492268
NA YPO0387 hypothetical proteinchromosome CDS403049 2064 + 0.475775
NA YPO1735 putative ABC transporter (ATP-binding protein)chromosome CDS1979915 1719 - 0.468877
NA YPO1944 hypothetical proteinchromosome CDS2206359 1293 + 0.528229
NA YPO2849 AcrB/AcrD/AcrF family membrane proteinchromosome CDS3183847 3075 + 0.543415
NA YPO0771 ABC-transporter transmembrane proteinchromosome CDS836783 1773 - 0.475465
NA YPO3685 putative HlyD family secretion proteinchromosome CDS4119223 936 + 0.532051
NA YPO3043 multidrug efflux proteinchromosome CDS3396465 3132 + 0.511814
NA YPO2252 putative toxin transport proteinchromosome CDS2527832 2139 + 0.509116
NA YPO2392 multidrug efflux protein NorAchromosome CDS2687160 1374 + 0.511645
NA YPO1946 ABC transporter, ATP-binding proteinchromosome CDS2208808 714 + 0.473389
NA YPO0388 hypothetical proteinchromosome CDS405109 1317 + 0.484434
NA YPO1179 hypothetical proteinchromosome CDS1328447 342 - 0.423977
NA YPO0619 putative HlyD family secretion proteinchromosome CDS681818 1050 - 0.54
NA YPO0421 putative multi-drug efflux proteinchromosome CDS439231 3087 + 0.50988
NA YPO0770 ABC-transporter transmembrane proteinchromosome CDS835033 1758 - 0.43686
NA YPO1497 ABC transporter ATP-binding proteinchromosome CDS1699211 669 - 0.384155
NA YPO1627 lipoprotein releasing system, ATP-binding proteinchromosome CDS1851684 705 + 0.493617
acrB YPO3133 multidrug efflux proteinchromosome CDS3492157 3153 + 0.492864
ampD YPO3423 putative signalling protein in beta-lactamase regulationchromosome CDS3827746 552 - 0.487319
ampE YPO3422 putative membrane-bound sensory transducer in beta-lactamase regulationchromosome CDS3826602 855 - 0.481871
ampH YPO1224 putative penicillin-binding proteinchromosome CDS1384727 1167 - 0.497001
creD YPO0894 hypothetical proteinchromosome CDS978649 1479 - 0.457742
emrA YPO3267 multidrug resistance protein Achromosome CDS3638327 1173 + 0.497016
mdlA YPO3145 probable ABC transporter (ATP-binding protein)chromosome CDS3505124 1767 - 0.483305
mdlB YPO3144 probable ATP transporter (ATP-binding protein)chromosome CDS3503308 1824 - 0.498904
msbA YPO1395 probable transport ATP-binding proteinchromosome CDS1577102 1749 + 0.465981
sapB YPO2356 peptide transport system permease proteinchromosome CDS2649118 966 + 0.507246
sapC YPO2357 peptide transport system permease proteinchromosome CDS2650070 891 + 0.516274
sapD YPO2358 peptide transport system ATP-binding proteinchromosome CDS2650960 993 + 0.492447
sapF YPO2359 peptide transport system ATP-binding proteinchromosome CDS2651952 816 + 0.496324
uppP YPO0649 undecaprenyl pyrophosphate phosphatasechromosome CDS706363 819 + 0.482295
ybtP YPO1913 lipoprotein inner membrane ABC-transporterchromosome CDS2163473 1803 + 0.572934
ybtQ YPO1914 inner membrane ABC-transporter YbtQchromosome CDS2165262 1803 + 0.586245
 
Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA y2671 ATP-binding ABC transporter proteinchromosome CDS2947755 669 + 0.384155
NA y1453 hypothetical proteinchromosome CDS1610755 417 + 0.321343
NA y0781 inner membrane permease of ABC transporterchromosome CDS874386 771 + 0.481193
NA y2366 ABC transporter permease proteinchromosome CDS2609147 1293 - 0.528229
NA y3796 hypothetical proteinchromosome CDS4214165 1317 - 0.484434
NA y1845 regulatorchromosome CDS2033614 765 + 0.416993
NA y1384 hypothetical proteinchromosome CDS1533126 3075 - 0.543415
NA y3010 hypothetical proteinchromosome CDS3319081 354 + 0.423729
NA y2593 hypothetical proteinchromosome CDS2856563 1431 - 0.507338
NA y2364 ABC transporter ATP-binding proteinchromosome CDS2607277 714 - 0.473389
NA y0178 hypothetical proteinchromosome CDS183132 936 - 0.532051
NA y0780 ATP-binding component of ABC transport systemchromosome CDS873463 927 + 0.476807
NA y1385 hypothetical proteinchromosome CDS1536197 3159 - 0.537195
NA y1877 regulatorchromosome CDS2074073 852 + 0.482394
NA y2090 N-terminal fragment of inner membrane permeasechromosome CDS2300766 1785 + 0.45042
NA y2365 integral membrane proteinchromosome CDS2607994 1221 - 0.497133
NA y1480 ATP-binding component of a transport systemchromosome CDS1642320 2037 - 0.500245
NA y3423 ATP-binding proteinchromosome CDS3796048 1776 + 0.4375
NA y1786 ATP-binding component of a transport systemchromosome CDS1966993 705 + 0.493617
NA y3558 hypothetical proteinchromosome CDS3937672 1050 + 0.54
NA y0323 hypothetical proteinchromosome CDS350663 408 + 0.468137
NA y2093 inner membrane permeasechromosome CDS2304220 2139 + 0.509116
NA y1945 multidrug efflux protein NorAchromosome CDS2145726 1374 - 0.511645
NA y2573 ABC transporterchromosome CDS2833106 1719 + 0.468877
NA y2964 enzymechromosome CDS3261848 1167 + 0.497858
NA y3797 hypothetical proteinchromosome CDS4215478 2067 - 0.476052
NA y2813 ATP-binding component of ABC transport systemchromosome CDS3115580 1950 - 0.515385
NA y0286 secretion ATPasechromosome CDS305910 2115 - 0.437825
NA y3422 ATP-binding cassette transporter Achromosome CDS3794301 1773 + 0.475465
NA y2091 C-terminal fragment of inner membrane permeasechromosome CDS2302603 222 + 0.477477
acrB y0703 acridine efflux pumpchromosome CDS787397 3126 + 0.522393
acrB y1049 acridine efflux pumpchromosome CDS1182421 3153 - 0.492547
acrD y1439 efflux pumpchromosome CDS1595057 3132 - 0.512133
acrF y3393 integral transmembrane proteinchromosome CDS3741456 3120 + 0.547115
ampD y0763 regulates ampCchromosome CDS850244 552 + 0.487319
ampE y0764 regulates ampCchromosome CDS851085 855 + 0.481871
creD y3278 inner membrane proteinchromosome CDS3608681 1500 - 0.456
emrA y0922 multidrug resistance secretion proteinchromosome CDS1039064 1185 - 0.49789
mdlA y1039 ATP-binding component of a transport systemchromosome CDS1170839 1767 + 0.483305
mdlB y1040 ATP-binding component of a transport systemchromosome CDS1172571 1851 + 0.50081
mexB y3759 multidrug resistance proteinchromosome CDS4178273 3087 - 0.50988
msbA y2777 ATP-binding transport protein; multicopy suppressor of htrBchromosome CDS3068888 1749 - 0.465981
sapB y1976 peptide ABC transport inner membrane permease proteinchromosome CDS2176915 966 - 0.507246
sapC y1975 homolog of Salmonella peptide transport permease proteinchromosome CDS2176038 891 - 0.516274
sapD y1974 ATP-binding protein of peptide ABC transport systemchromosome CDS2175046 993 - 0.492447
sapF y1973 ATP-binding protein of peptide ABC transport systemchromosome CDS2174231 816 - 0.496324
uppP y3530 undecaprenyl pyrophosphate phosphatasechromosome CDS3915317 819 - 0.482295
ybtP y2397 permease and ATP-binding protein of yersiniabactin-iron ABC transporterchromosome CDS2651523 1803 - 0.572379
ybtQ y2396 permease and ATP-binding protein of yersiniabactin-iron ABC transporterchromosome CDS2649734 1803 - 0.586245
 
Yersinia pestis Nepal516, Nepal516
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPN_0946 ATP transporter ATP-binding proteinchromosome CDS1100449 1824 + 0.498904
NA YPN_0957 multidrug efflux proteinchromosome CDS1110271 3153 - 0.492864
NA YPN_1342 multidrug efflux proteinchromosome CDS1524979 3132 - 0.512133
NA YPN_0829 multidrug resistance protein Achromosome CDS968041 1173 - 0.497016
NA YPN_3210 ABC-transporter transmembrane proteinchromosome CDS3632872 1776 - 0.4375
NA YPN_2582 transport ATP-binding proteinchromosome CDS2904891 1749 - 0.465981
NA YPN_0258 hypothetical proteinchromosome CDS322257 2064 + 0.475775
NA YPN_2387 ABC transporter (ATP-binding protein)chromosome CDS2668409 1719 + 0.468877
NA YPN_1818 peptide transport system ATP-binding proteinchromosome CDS2053104 993 + 0.492447
NA YPN_1816 peptide transport system permease proteinchromosome CDS2051262 966 + 0.507246
NA YPN_0291 multi-drug efflux proteinchromosome CDS358432 3087 + 0.509556
NA YPN_1721 toxin transport proteinchromosome CDS1936616 2139 + 0.509116
NA YPN_0509 bacitracin resistance proteinchromosome CDS615934 819 + 0.482295
NA YPN_3487 HlyD family secretion proteinchromosome CDS3969943 936 - 0.532051
NA YPN_1356 hypothetical proteinchromosome CDS1540677 417 + 0.321343
NA YPN_2005 lipoprotein releasing system, ATP-binding proteinchromosome CDS2266396 705 - 0.493617
NA YPN_2819 ABC transporter multidrug efflux pump, permease subunitchromosome CDS3174683 1107 + 0.478771
NA YPN_2409 sugar transporterchromosome CDS2691893 1431 - 0.507338
NA YPN_0665 signalling protein in beta-lactamase regulationchromosome CDS779180 552 + 0.487319
NA YPN_3093 membrane proteinchromosome CDS3476504 1479 - 0.457742
NA YPN_1846 transport proteinchromosome CDS2085613 1374 + 0.511645
NA YPN_3211 ABC-transporter transmembrane proteinchromosome CDS3634622 1773 - 0.475465
NA YPN_1289 AcrB/AcrD/AcrF family membrane proteinchromosome CDS1463046 3075 - 0.543415
NA YPN_1948 N-acetylmuramoyl-L-alanine amidasechromosome CDS2199708 765 - 0.416993
NA YPN_0683 ABC transporter, integral membrane proteinchromosome CDS803322 771 + 0.481193
NA YPN_2753 penicillin-binding proteinchromosome CDS3097837 1167 + 0.497858
NA YPN_1717 hypothetical proteinchromosome CDS1933162 1785 + 0.45042
NA YPN_0259 hypothetical proteinchromosome CDS324317 1317 + 0.484434
NA YPN_1915 N-acetylmuramoyl-L-alanine amidasechromosome CDS2159111 852 - 0.482394
NA YPN_0682 ABC transporter, ATP-binding proteinchromosome CDS802399 927 + 0.476807
NA YPN_2615 ABC transporter ATP-binding proteinchromosome CDS2951598 1950 - 0.515385
NA YPN_0945 ABC transporter ATP-binding proteinchromosome CDS1098690 1767 + 0.483305
NA YPN_2798 hypothetical proteinchromosome CDS3154986 342 + 0.423977
NA YPN_3754 hypothetical proteinchromosome CDS4306452 2115 + 0.437825
NA YPN_0482 HlyD family secretion proteinchromosome CDS593352 1050 - 0.54
NA YPN_1290 AcrB/AcrD/AcrF family membrane proteinchromosome CDS1466117 3159 - 0.537195
NA YPN_0666 membrane-bound sensory transducer in beta-lactamase regulationchromosome CDS780021 855 + 0.481871
NA YPN_1817 peptide transport system permease proteinchromosome CDS2052214 891 + 0.516274
NA YPN_1819 peptide transport system ATP-binding proteinchromosome CDS2054096 816 + 0.496324
NA YPN_1382 ABC transporter, ATP-binding proteinchromosome CDS1572243 2037 - 0.500245
NA YPN_0605 multidrug efflux proteinchromosome CDS715753 3126 + 0.522393
NA YPN_2481 ABC transporter ATP-binding proteinchromosome CDS2783817 669 + 0.384155
NA YPN_0055 membrane proteinchromosome CDS78725 408 + 0.468137
NA YPN_3231 integral membrane efflux proteinchromosome CDS3686146 3120 - 0.547115
 
Yersinia pestis biovar Microtus str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP_0977 ABC-type multidrug transport system, permease componentchromosome CDS1052290 1269 + 0.508274
NA YP_0280 putative ABC transporter, integral membrane proteinchromosome CDS287052 771 + 0.481193
NA YP_2415 hypothetical proteinchromosome CDS2684751 156 - 0.358974
NA YP_3793 hypothetical proteinchromosome CDS4318463 1317 - 0.484434
NA YP_1688 hypothetical proteinchromosome CDS1863121 1293 + 0.528229
NA YP_0978 ABC-type multidrug transport system, permease componentchromosome CDS1053571 1107 + 0.478771
NA YP_2625 putative ABC transporter, ATP-binding proteinchromosome CDS2908817 2037 + 0.500245
NA YP_0958 hypothetical proteinchromosome CDS1033862 354 + 0.423729
NA YP_1689 hypothetical proteinchromosome CDS1864346 1221 + 0.497133
NA YP_2652 hypothetical proteinchromosome CDS2942003 417 - 0.321343
NA YP_3136 hypothetical proteinchromosome CDS3495873 408 + 0.468137
NA YP_1229 putative ABC transporter ATP-binding proteinchromosome CDS1341905 1950 - 0.515897
acrB1 YP_0601 multidrug efflux proteinchromosome CDS642352 3126 + 0.522393
acrB2 YP_0798 multidrug efflux proteinchromosome CDS860216 3153 - 0.492864
acrB3 YP_2715 AcrB/AcrD/AcrF family membrane proteinchromosome CDS3011358 3159 + 0.537195
acrB4 YP_2716 AcrB/AcrD/AcrF family membrane proteinchromosome CDS3014513 3075 + 0.543415
acrD YP_2666 multidrug efflux proteinchromosome CDS2954861 3258 + 0.513198
acrF YP_3412 putative integral membrane efflux proteinchromosome CDS3828760 3120 + 0.547115
ampD1 YP_0261 putative signalling protein in beta-lactamase regulationchromosome CDS262927 552 + 0.487319
ampD2 YP_1740 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS1927282 852 + 0.482394
ampD3 YP_1812 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS2015902 765 + 0.416993
ampE YP_0262 putative membrane-bound sensory transducer in beta-lactamase regulationchromosome CDS263751 855 + 0.481871
ampH YP_0915 putative penicillin-binding proteinchromosome CDS977491 1167 + 0.497858
ccmA1 YP_0279 putative ABC transporter, ATP-binding proteinchromosome CDS286129 927 + 0.476807
ccmA2 YP_0976 ABC-type multidrug transport system, ATPase componentchromosome CDS1050636 1743 + 0.512909
creD YP_3590 hypothetical proteinchromosome CDS4083590 1479 - 0.457742
emrA YP_0664 multidrug resistance protein Achromosome CDS718810 1185 - 0.49789
emrK1 YP_2937 putative HlyD family secretion proteinchromosome CDS3274650 1050 - 0.54
emrK2 YP_3858 putative HlyD family secretion proteinchromosome CDS4384874 936 - 0.532051
mcrB YP_3794 GTPase subunit of restriction endonucleasechromosome CDS4319776 2064 - 0.475775
mdlA YP_0786 probable ABC transporter (ATP-binding protein)chromosome CDS848635 1767 + 0.483305
mdlB1 YP_0787 putative ATP-binding component of a transport systemchromosome CDS850367 1851 + 0.50081
mdlB4 YP_1475 putative ABC transporter (ATP-binding protein)chromosome CDS1636720 1719 - 0.468877
mdlB5 YP_3430 ABC-transporter transmembrane proteinchromosome CDS3880010 1773 + 0.475465
mdlB6 YP_3431 ATP-binding proteinchromosome CDS3881757 1776 + 0.4375
mexB YP_3760 putative multi-drug efflux proteinchromosome CDS4282748 3087 - 0.50988
msbA YP_1198 probable transport ATP-binding proteinchromosome CDS1297196 1620 - 0.466049
norM1 YP_1459 putative sugar transporterchromosome CDS1617081 1431 + 0.507338
norM2 YP_2179 multidrug efflux protein NorAchromosome CDS2423671 1374 + 0.511645
phnL3 YP_1387 ABC transporter ATP-binding proteinchromosome CDS1528115 669 - 0.384155
phnL4 YP_1690 ABC transporter, ATP-binding proteinchromosome CDS1865570 714 + 0.473389
phnL5 YP_1756 lipoprotein releasing system, ATP-binding proteinchromosome CDS1947926 705 + 0.493617
sapB2 YP_2145 peptide transport system permease proteinchromosome CDS2387588 966 + 0.507246
sapC YP_2146 peptide transport system permease proteinchromosome CDS2388540 891 + 0.516274
sapD YP_2147 peptide transport system ATP-binding proteinchromosome CDS2389430 993 + 0.492447
sapF YP_2148 peptide transport system ATP-binding proteinchromosome CDS2390422 816 + 0.496324
sunT YP_0100 putative secretion ATPasechromosome CDS106984 2115 - 0.438298
sunT-2 YP_2048 putative toxin transport proteinchromosome CDS2273849 2139 + 0.509116
uppP YP_2964 undecaprenyl pyrophosphate phosphatasechromosome CDS3298428 819 + 0.482295
ybtP YP_1656 permease and ATP-binding protein of yersiniabactin-iron ABC transporterchromosome CDS1820217 1803 + 0.572379
ybtQ YP_1657 inner membrane ABC-transporter YbtQchromosome CDS1822006 1803 + 0.586245
 
Yersinia pestis biovar Orientalis str. IP275, IP275
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
strB YpIP275_pIP1202_0056 streptomycin resistance protein BpIP1202 CDS35518 837 + 0.55914
 
Yersinia pseudotuberculosis IP 32953, IP32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPTB3290 putative ABC iron siderophore transporter, fused permease and ATPase domains.chromosome CDS3889519 1758 - 0.435154
NA YPTB1614 putative ABC efflux transporter, fused ATP-binding and permease domainschromosome CDS1963758 1719 - 0.468877
NA YPTB1209 possible ABC transporter multidrug efflux pump, permease subunitchromosome CDS1441130 1107 - 0.479675
NA YPTB2395 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS2826648 765 - 0.420915
NA YPTB1944 ABC transporter, ATP-binding subunitchromosome CDS2287207 714 + 0.47479
NA YPTB3291 putative ABC iron siderophore transporter, fused permease and ATPase domainschromosome CDS3891269 1773 - 0.476593
NA YPTB3881 possible restriction modification enzymechromosome CDS4631115 1230 - 0.394309
NA YPTB3436 possible membrane bound HlyD family secretion protein.chromosome CDS4076258 1050 + 0.540952
NA YPTB0090 ABC transporter, multidrug efflux pump, fused permease and ATPase domainschromosome CDS102190 2115 - 0.438298
NA YPTB3879 possible type I restriction enzyme (restriction subunit)chromosome CDS4626797 3279 - 0.489478
NA YPTB0536 putative type I restriction enzyme, S subunitchromosome CDS632052 1284 - 0.378505
NA YPTB1943 putative ABC transporter, permease subunitchromosome CDS2286022 1182 + 0.490694
NA YPTB1391 putative ABC transporter with fused permease and ATP-binding domainschromosome CDS1656390 1950 + 0.514872
NA YPTB0535 putative type I restriction enzyme, R subunitchromosome CDS628794 3249 - 0.445676
NA YPTB2305 multidrug efflux protein NorAchromosome CDS2719499 1374 + 0.511645
NA YPTB1513 ABC transporter ATP-binding proteinchromosome CDS1817230 669 - 0.379671
NA YPTB3883 hypothetical proteinchromosome CDS4633864 579 - 0.459413
NA YPTB2171 putative ABC RTX toxin transporter, fused ATP binding/permease domainschromosome CDS2552351 2139 + 0.509584
NA YPTB0537 putative type I restriction-modification system, methyltransferase subunit (N-6 DNA Methylase)chromosome CDS633337 2592 - 0.45679
NA YPTB1211 ABC transporter multidrug efflux pump, fused ATP-binding domainschromosome CDS1443429 1743 - 0.512909
NA YPTB3306 RND family drug efflux pumpchromosome CDS3939458 3120 - 0.549038
NA YPTB0492 multidrug efflux protein, RND familychromosome CDS579319 3126 + 0.522073
NA YPTB2721 ABC transporter(efflux), fused permease and ATP-binding domainschromosome CDS3214876 2037 + 0.500245
NA YPTB1210 possible ABC transporter multidrug efflux pump, permease subunitchromosome CDS1442249 1176 - 0.511054
NA YPTB1220 hypothetical proteinchromosome CDS1455355 342 - 0.423977
NA YPTB0566 putative heavy metal/multi-drug efflux protein, RND familychromosome CDS666038 3087 + 0.510204
NA YPTB2169 putative ABC RTX toxin transporter, fused ATP binding/permease domainschromosome CDS2548767 2148 + 0.454376
NA YPTB1942 putative ABC transporter, permease subunitchromosome CDS2284740 1293 + 0.527456
NA YPTB2747 hypothetical proteinchromosome CDS3248180 417 - 0.318945
NA YPTB2765 HAE1 family (RND superfamily) multidrug efflux proteinchromosome CDS3265117 3132 + 0.513091
acrB YPTB0983 RND family, acridine/multidrug efflux pumpchromosome CDS1178852 3153 - 0.492547
ampD YPTB0709 N-acetyl-anhydromuramyl-L-alanine amidasechromosome CDS848301 552 + 0.487319
ampE YPTB0710 putative transmembrane protein, putative proteasechromosome CDS849125 855 + 0.481871
ampH YPTB1262 putative penicillin-binding proteinchromosome CDS1511022 1167 - 0.498715
creD YPTB3169 hypothetical proteinchromosome CDS3726585 1479 - 0.460446
emrA YPTB0856 multidrug efflux pump, membrane fusion (MFP/HlyD) family subunit emrAchromosome CDS1033513 1173 - 0.497016
hsdM YPTB3882 putative type I site-specific deoxyribonuclease LldI chain hs...chromosome CDS4632334 1524 - 0.456037
lolD YPTB2441 ABC transporter/lipoprotein releasing system, ATP-binding subunit lolDchromosome CDS2885388 705 - 0.496454
mdlA YPTB0971 ABC type drug efflux transporter, fused ATP binding and permease domainschromosome CDS1167219 1767 + 0.482739
mdlB YPTB0972 ABC type drug efflux transporter, fused ATP binding and permease domainschromosome CDS1168978 1824 + 0.500548
msbA YPTB1420 ABC phospholipid/LPS/lipidA transporter MsbA, fused permease and ATP-binding domainschromosome CDS1700720 1749 + 0.465981
sapB YPTB2273 ABC peptide transporter, permease subunit sapBchromosome CDS2683417 966 + 0.505176
sapC YPTB2274 ABC peptide transporter, permease subunit sapCchromosome CDS2684369 891 + 0.515152
sapD YPTB2275 ABC peptide transporter, ATP-binding subunit sapDchromosome CDS2685259 993 + 0.493454
sapF YPTB2276 ABC peptide transporter, ATP-binding subunit sapFchromosome CDS2686251 816 + 0.493873
uppP YPTB3412 undecaprenyl pyrophosphate phosphatasechromosome CDS4053876 819 - 0.483516
yadG YPTB0725 putative ABC type drug efflux protein, ATP bindingchromosome CDS870953 927 + 0.482201
yadH YPTB0726 putative ABC type drug efflux permease proteinchromosome CDS871876 771 + 0.485084
ybjR YPTB2366 probable N-acetylmuramoyl-L-alanine amidasechromosome CDS2788021 852 - 0.484742
ybtP YPTB1598 lipoprotein inner membrane ABC-transporterchromosome CDS1941953 1803 + 0.572934
ybtQ YPTB1599 inner membrane ABC-transporter YbtQchromosome CDS1943742 1803 + 0.586245
yeeO YPTB1580 putative MATE family multidrug efflux pumpchromosome CDS1907697 1431 + 0.508036
yegN YPTB2814 AcrB/AcrD/AcrF(HAE1)family (RND superfamily) drug efflux pumpchromosome CDS3324217 3159 + 0.535929
yegO YPTB2815 AcrB/AcrD/AcrF (HAE1) family (RND Superfamily) drug efflux pumpchromosome CDS3327372 3075 + 0.54374
yhcQ YPTB3547 putative HlyD family secretion proteinchromosome CDS4214299 936 - 0.530983
yijD YPTB0123 hypothetical proteinchromosome CDS145543 408 + 0.468137