Gene list
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Organism: Yersinia pseudotuberculosis IP 32953, IP 32953
Number of genes found: 147
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pseudotuberculosis IP 32953, IP 32953 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pYV0050 | hypothetical protein | pYV | CDS | 35445 | 123 | + | 0.463415 |
NA | pYV0051 | hypothetical protein | pYV | CDS | 35593 | 324 | + | 0.382716 |
NA | pYV0080 | yscD; putative type III secretion protein | pYV | CDS | 56826 | 1260 | + | 0.468254 |
NA | pYV0079 | yscC; putative type III secretion protein | pYV | CDS | 55006 | 1824 | + | 0.453947 |
NA | pYptb0034 | hypothetical protein | pYptb32953 | CDS | 23751 | 249 | + | 0.401606 |
NA | pYV0090 | putative transposase | pYV | CDS | 62838 | 267 | + | 0.434457 |
NA | pYV0096 | transposase, IS630 family | pYV | CDS | 66691 | 129 | - | 0.434109 |
NA | pYV0020 | sycH; putative yopH targeting protein | pYV | CDS | 16714 | 426 | - | 0.41784 |
NA | pYptb0009 | hypothetical protein | pYptb32953 | CDS | 7345 | 255 | + | 0.372549 |
NA | pYV0089 | yscM, lcrQ; putative type III secretion regulatory | pYV | CDS | 61943 | 348 | + | 0.479885 |
NA | pYV0043 | possible transposase remnant | pYV | CDS | 31368 | 192 | + | 0.458333 |
NA | pYV0005 | repA, repA1; putative replication initiation protein | pYV | CDS | 4823 | 879 | - | 0.5438 |
NA | pYV0022 | putative transposase | pYV | CDS | 17915 | 1173 | - | 0.544757 |
NA | pYV0030 | hypothetical protein | pYV | CDS | 22682 | 294 | - | 0.5 |
NA | pYV0044 | hypothetical protein | pYV | CDS | 31576 | 420 | + | 0.388095 |
NA | pYV0017 | putative resolvase | pYV | CDS | 13865 | 552 | + | 0.46558 |
NA | pYV0081 | yscE; putative type III secretion protein | pYV | CDS | 58082 | 201 | + | 0.422886 |
NA | pYV0067 | putative Yops secretion ATP synthase | pYV | CDS | 45443 | 1320 | + | 0.508333 |
NA | pYptb0025 | hypothetical protein | pYptb32953 | CDS | 17341 | 123 | + | 0.479675 |
NA | pYV0014 | pYV | pseudo | 11010 | 225 | + | 0.524444 | |
NA | pYV0029 | hypothetical protein | pYV | CDS | 22359 | 174 | + | 0.471264 |
NA | pYV0076 | lcrF, virF; putative thermoregulatory protein | pYV | CDS | 53369 | 816 | + | 0.416667 |
NA | pYV0062 | yscX; putative type III secretion protein | pYV | CDS | 43382 | 369 | - | 0.495935 |
NA | pYV0037 | pYV | pseudo | 27269 | 606 | - | 0.486799 | |
NA | pYV0038 | pYV | pseudo | 27894 | 114 | - | 0.412281 | |
NA | pYV0047 | yopM; putative targeted effector protein | pYV | CDS | 33232 | 1653 | - | 0.395644 |
NA | pYV0037 | pYV | pseudo | 27269 | 606 | - | 0.486799 | |
NA | pYV0074 | yscU; putative type III secretion protein | pYV | CDS | 51210 | 1065 | + | 0.431925 |
NA | pYptb0032 | hypothetical protein | pYptb32953 | CDS | 23291 | 153 | + | 0.496732 |
NA | pYV0069 | yscP; putative type III secretion protein | pYV | CDS | 47223 | 1368 | + | 0.487573 |
NA | pYV0026 | hypothetical protein | pYV | CDS | 21282 | 300 | - | 0.38 |
NA | pYV0054 | yopD; putative Yop negative regulation/targeting component | pYV | CDS | 36551 | 921 | - | 0.431053 |
NA | pYV0007 | repB, repA2, copB; putative replication transcriptional regulator | pYV | CDS | 5998 | 255 | - | 0.423529 |
NA | pYV0010 | hypothetical protein | pYV | CDS | 7978 | 459 | - | 0.555556 |
NA | pYV0015 | pYV | pseudo | 11219 | 171 | + | 0.48538 | |
NA | pYV0013 | hypothetical protein | pYV | CDS | 9103 | 1299 | - | 0.43341 |
NA | pYV0099 | hypothetical protein | pYV | CDS | 68142 | 135 | - | 0.392593 |
NA | pYV0041 | yop targeted effector yopT | pYV | CDS | 29513 | 969 | + | 0.430341 |
NA | pYptb0019 | hypothetical protein | pYptb32953 | CDS | 15826 | 267 | + | 0.318352 |
NA | pYV0035 | hypothetical protein | pYV | CDS | 26357 | 459 | - | 0.551198 |
NA | pYptb0043 | hypothetical protein | pYptb32953 | CDS | 27458 | 123 | + | 0.276423 |
NA | pYptb0003 | hypothetical protein | pYptb32953 | CDS | 1910 | 228 | + | 0.29386 |
NA | pYV0070 | yscQ; putative type III secretion protein | pYV | CDS | 48587 | 924 | + | 0.481602 |
NA | pYptb0021 | hypothetical protein | pYptb32953 | CDS | 16529 | 273 | + | 0.377289 |
NA | pYV0094 | yopH; putative protein-tyrosine phosphatase Yop effector | pYV | CDS | 64366 | 1407 | - | 0.474058 |
NA | pYV0001 | ypkA; putative targeted effector protein kinase | pYV | CDS | 12 | 2199 | - | 0.482947 |
NA | pYV0011 | possible transposase remname | pYV | CDS | 8586 | 189 | + | 0.492063 |
NA | pYV0015 | pYV | pseudo | 11219 | 171 | + | 0.48538 | |
NA | pYV0098 | yopP, yopJ; putative targeted effector protein | pYV | CDS | 67275 | 867 | - | 0.346021 |
NA | pYV0060 | lcrD, yscV; putative membrane-bound Yop protein | pYV | CDS | 40940 | 2115 | - | 0.46383 |
NA | pYV0071 | yscR; putative Yop secretion membrane protein | pYV | CDS | 49507 | 654 | + | 0.43578 |
NA | pYV0064 | tyeA; putative Yop secretion and targeting protein | pYV | CDS | 44105 | 279 | - | 0.433692 |
NA | pYV0092 | putative transposase | pYV | CDS | 63559 | 402 | + | 0.470149 |
NA | pYV0021 | putative transposase | pYV | CDS | 17484 | 432 | - | 0.571759 |
NA | pYV0057 | lcrV; putative V antigen, antihost protein/regulator | pYV | CDS | 39192 | 981 | - | 0.372069 |
NA | pYV0019 | putative transposase | pYV | CDS | 15757 | 810 | + | 0.507407 |
NA | pYV0031 | sopB; putative plasmid partitioning control protein | pYV | CDS | 23123 | 966 | - | 0.415114 |
NA | pYV0091 | putative transposase | pYV | CDS | 63140 | 423 | + | 0.453901 |
NA | pYptb0033 | hypothetical protein | pYptb32953 | CDS | 23475 | 162 | + | 0.382716 |
NA | pYV0002 | hypothetical protein | pYV | CDS | 2218 | 450 | - | 0.453333 |
NA | pYptb0023 | hypothetical protein | pYptb32953 | CDS | 17081 | 132 | + | 0.477273 |
NA | pYV0006 | hypothetical protein | pYV | CDS | 5803 | 153 | + | 0.490196 |
NA | pYV0028 | putative transposase remnant | pYV | CDS | 21960 | 204 | - | 0.480392 |
NA | pYptb0038 | hypothetical protein | pYptb32953 | CDS | 26274 | 216 | + | 0.398148 |
NA | pYV0097 | hypothetical protein | pYV | CDS | 66902 | 93 | - | 0.387097 |
NA | pYptb0041 | hypothetical protein | pYptb32953 | CDS | 27120 | 102 | + | 0.362745 |
NA | pYV0065 | yopN, lcrE; putative membrane-bound Yop targeting protein | pYV | CDS | 44364 | 882 | - | 0.460317 |
NA | pYV0075 | virG; putative Yop targeting lipoprotein | pYV | CDS | 52850 | 396 | + | 0.444444 |
NA | pYV0063 | sycN; putative type III secretion protein | pYV | CDS | 43747 | 372 | - | 0.524194 |
NA | pYV0077 | hypothetical protein | pYV | CDS | 54263 | 99 | + | 0.323232 |
NA | pYV0008 | possible transposase remnant | pYV | CDS | 6779 | 405 | + | 0.516049 |
NA | pYptb0002 | hypothetical protein | pYptb32953 | CDS | 1316 | 309 | + | 0.339806 |
NA | pYV0068 | yscO; putative type III secretion protein | pYV | CDS | 46759 | 465 | + | 0.455914 |
NA | pYV0016 | tnpA; putative transposase protein | pYV | CDS | 11386 | 2316 | - | 0.51943 |
NA | pYV0012 | hypothetical protein | pYV | CDS | 8771 | 210 | - | 0.447619 |
NA | pYV0027 | hypothetical protein | pYV | CDS | 21574 | 276 | - | 0.434783 |
NA | pYV0048 | hypothetical protein | pYV | CDS | 35009 | 96 | - | 0.40625 |
NA | pYptb0028 | pYptb32953 | pseudo | 17716 | 621 | + | 0.41868 | |
NA | pYV0073 | yscT; putative type III secretion protein | pYV | CDS | 50425 | 786 | + | 0.428753 |
NA | pYptb0040 | hypothetical protein | pYptb32953 | CDS | 26953 | 147 | + | 0.469388 |
NA | pYV0093 | putative transposase | pYV | CDS | 63966 | 180 | + | 0.472222 |
NA | pYV0095 | putative transposase | pYV | CDS | 66153 | 537 | + | 0.489758 |
NA | pYV0046 | putative transposase remnant | pYV | CDS | 32890 | 300 | + | 0.436667 |
NA | pYV0034 | putative transposase remnant | pYV | CDS | 26051 | 195 | - | 0.497436 |
NA | pYV0055 | yopB; putative Yop targeting protein | pYV | CDS | 37490 | 1206 | - | 0.466003 |
NA | pYV0052 | hypothetical protein | pYV | CDS | 35951 | 123 | + | 0.479675 |
NA | pYV0056 | lcrH, sycD; low calcium response protein H | pYV | CDS | 38673 | 507 | - | 0.441815 |
NA | pYV0061 | yscY; putative type III secretion protein | pYV | CDS | 43041 | 345 | - | 0.46087 |
NA | pYptb0022 | hypothetical protein | pYptb32953 | CDS | 16823 | 174 | + | 0.545977 |
NA | pYptb0026 | hypothetical protein | pYptb32953 | CDS | 17463 | 60 | + | 0.483333 |
NA | pYptb0020 | DNA-binding protein | pYptb32953 | CDS | 16111 | 414 | + | 0.381643 |
NA | pYV0078 | hypothetical protein | pYV | CDS | 54587 | 414 | + | 0.42029 |
NA | pYV0024 | sycE, yerA; putative yopE chaperone | pYV | CDS | 19897 | 393 | - | 0.409669 |
NA | pYV0082 | yscF; putative type III secretion protein | pYV | CDS | 58283 | 264 | + | 0.416667 |
NA | pYptb0016 | hypothetical protein | pYptb32953 | CDS | 13272 | 423 | + | 0.503546 |
NA | pYptb0017 | hypothetical protein | pYptb32953 | CDS | 14071 | 306 | + | 0.506536 |
NA | pYV0066 | hypothetical protein | pYV | CDS | 45305 | 105 | + | 0.390476 |
NA | pYV0086 | yscJ, ylpB; putative type III secretion lipoprotein | pYV | CDS | 59744 | 735 | + | 0.428571 |
NA | pYV0085 | yscI, lcrO; putative type III secretion protein | pYV | CDS | 59390 | 348 | + | 0.468391 |
NA | pYV0023 | possible transposase remnant | pYV | CDS | 19220 | 615 | + | 0.55122 |
NA | pYV0088 | yscL; putative type III secretion protein | pYV | CDS | 61086 | 633 | + | 0.450237 |
NA | pYV0038 | pYV | pseudo | 27894 | 114 | - | 0.412281 | |
NA | pYV0009 | hyothetical protein | pYV | CDS | 7489 | 318 | - | 0.493711 |
NA | pYV0004 | hypothetical protein | pYV | CDS | 3411 | 240 | - | 0.504167 |
NA | pYV0036 | hypothetical protein | pYV | CDS | 26842 | 261 | - | 0.509579 |
NA | pYV0032 | sopA; putative plasmid partitioning transcription repressor | pYV | CDS | 24085 | 1209 | - | 0.434243 |
NA | pYV0025 | putative outer membrane virulence protein | pYV | CDS | 20483 | 660 | + | 0.510606 |
NA | pYV0042 | yopT chaperone | pYV | CDS | 30481 | 393 | + | 0.414758 |
NA | pYV0059 | lcrR; hypothetical protein lcrR | pYV | CDS | 40503 | 441 | - | 0.489796 |
NA | pYV0039 | putative transposase | pYV | CDS | 28171 | 183 | - | 0.513661 |
NA | pYptb0042 | hypothetical protein | pYptb32953 | CDS | 27236 | 147 | + | 0.272109 |
NA | pYV0083 | yscG; putative type III secretion protein | pYV | CDS | 58548 | 348 | + | 0.442529 |
NA | pYV0053 | hypothetical protein | pYV | CDS | 36160 | 168 | + | 0.428571 |
NA | pYV0033 | hypothetical protein | pYV | CDS | 25800 | 114 | + | 0.561404 |
NA | pYptb0027 | hypothetical protein | pYptb32953 | CDS | 17550 | 123 | + | 0.520325 |
NA | pYV0018 | putative transposase | pYV | CDS | 15467 | 267 | + | 0.479401 |
NA | pYV0049 | hypothetical protein | pYV | CDS | 35209 | 216 | - | 0.430556 |
NA | pYV0040 | yop targeting protein yopK, yopQ | pYV | CDS | 28491 | 549 | - | 0.333333 |
NA | pYV0045 | hypothetical protein | pYV | CDS | 32524 | 192 | - | 0.458333 |
NA | pYptb0024 | hypothetical protein | pYptb32953 | CDS | 17219 | 126 | + | 0.547619 |
NA | pYptb0008 | hypothetical protein | pYptb32953 | CDS | 7097 | 252 | + | 0.464286 |
NA | pYV0014 | pYV | pseudo | 11010 | 225 | + | 0.524444 | |
NA | pYptb0028 | pYptb32953 | pseudo | 17716 | 621 | + | 0.41868 | |
NA | pYptb0036 | hypothetical protein | pYptb32953 | CDS | 25339 | 237 | + | 0.42616 |
NA | pYV0084 | yscH, yopR, lcrP; putative type III secretion protein | pYV | CDS | 58892 | 498 | + | 0.427711 |
NA | pYptb0010 | hypothetical protein | pYptb32953 | CDS | 7718 | 246 | + | 0.443089 |
NA | pYV0072 | yscS; putative type III secretion protein | pYV | CDS | 50162 | 267 | + | 0.453184 |
NA | pYptb0018 | hypothetical protein | pYptb32953 | CDS | 14519 | 1251 | + | 0.440448 |
NA | pYV0058 | lcrG; putative Yop regulator | pYV | CDS | 40174 | 288 | - | 0.465278 |
NA | pYV0003 | putative transposase remnant | pYV | CDS | 2919 | 321 | - | 0.510903 |
NA | pYptb0039 | hypothetical protein | pYptb32953 | CDS | 26513 | 294 | + | 0.479592 |
NA | pYV0087 | yscK; putative type III secretion protein | pYV | CDS | 60457 | 651 | + | 0.482335 |
ArdC | pYptb0035 | antirestriction protein | pYptb32953 | CDS | 24036 | 981 | - | 0.474006 |
parA | pYptb0037 | plasmid partitioning protein | pYptb32953 | CDS | 25627 | 627 | + | 0.4689 |
rep | pYptb0001 | plasmid replication protein | pYptb32953 | CDS | 202 | 987 | + | 0.35157 |
topB | pYptb0031 | DNA topoisomerase III family | pYptb32953 | CDS | 21070 | 2163 | + | 0.515488 |
triA | pYptb0004 | TriA protein | pYptb32953 | CDS | 2572 | 618 | + | 0.47411 |
triB | pYptb0005 | TriB Protein | pYptb32953 | CDS | 3194 | 294 | + | 0.452381 |
triC | pYptb0006 | TriC protein | pYptb32953 | CDS | 3506 | 2748 | + | 0.483624 |
triD | pYptb0007 | TriD protein | pYptb32953 | CDS | 6318 | 714 | + | 0.47619 |
triE | pYptb0011 | TriE protein | pYptb32953 | CDS | 7975 | 1041 | + | 0.530259 |
triG | pYptb0012 | TriG protein | pYptb32953 | CDS | 9186 | 684 | + | 0.423977 |
triH | pYptb0013 | TriH protein | pYptb32953 | CDS | 9869 | 948 | + | 0.489451 |
triI | pYptb0014 | TriI protein | pYptb32953 | CDS | 10813 | 1233 | + | 0.525547 |
triJ | pYptb0015 | TriJ protein | pYptb32953 | CDS | 12262 | 1014 | + | 0.475345 |
triK | pYptb0029 | TriK protein | pYptb32953 | CDS | 18485 | 1782 | + | 0.407969 |
triL | pYptb0030 | TriL protein | pYptb32953 | CDS | 20274 | 741 | + | 0.388664 |