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2024-05-23 17:39:46

Gene list

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Genomic element: pCD1

Number of genes found: 162

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pCD1 repeat_region45033 1904 - 0.434874
NA YPCD1.24n pCD1 misc_feature15838 137 - 0.510949
NA pCD1 repeat_region9066 1235 - 0.509312
NA YPCD1.03c pCD1 misc_feature1956 249 - 0.497992
NA YPCD1.97c putative transposasepCD1 CDS69378 927 - 0.558792
NA pCD1 repeat_region1956 349 - 0.484241
NA YPCD1.84c pCD1 misc_feature59443 492 - 0.554878
NA YPCD1.09c hypothetical proteinpCD1 CDS4691 243 - 0.440329
NA YPCD1.89 pCD1 misc_feature62468 351 + 0.512821
NA pCD1 repeat_region52267 8 + 1
NA pCD1 misc_feature58841 11460 + 0.462216
NA pCD1 misc_feature1956 44316 + 0.437246
NA pCD1 repeat_region58108 194 + 0.489691
NA YPCD1.18c pCD1 misc_feature11260 144 - 0.527778
NA YPCD1.82c pCD1 misc_feature58523 366 - 0.540984
NA YPCD1.02 transposase/IS proteinpCD1 CDS1110 780 + 0.503846
NA YPCD1.83c pCD1 misc_feature58881 370 - 0.5
NA YPCD1.04 pCD1 misc_feature2304 648 + 0.546296
NA YPCD1.26n pCD1 misc_feature17974 207 - 0.444444
NA pCD1 repeat_region54366 234 + 0.487179
NA YPCD1.14c pCD1 misc_feature9220 509 - 0.550098
NA pCD1 misc_feature46626 60 + 0.516667
NA YPCD1.10c pCD1 misc_feature5149 249 - 0.429719
NA YPCD1.27 pCD1 pseudo18229 655 + 0.416794
NA pCD1 misc_feature2304 679 + 0.544919
NA pCD1 repeat_region49046 612 + 0.495098
NA YPCD1.74c pCD1 misc_feature54378 316 - 0.5
NA pCD1 misc_feature45593 361 + 0.468144
NA pCD1 repeat_region58403 137 - 0.49635
NA YPCD1.66 pCD1 misc_feature46610 292 - 0.469178
NA pCD1 repeat_region66851 1214 + 0.499176
NA pCD1 rep_origin55956 1195 - 0.50795
NA pCD1 repeat_region46081 186 - 0.456989
NA YPCD1.70c pCD1 misc_feature49657 99 - 0.40404
NA YPCD1.14c pCD1 misc_feature9101 1107 - 0.522132
NA pCD1 repeat_region16786 364 - 0.370879
NA YPCD1.14n hypothetical proteinpCD1 CDS9123 198 - 0.5
NA YPCD1.94 putative transposasepCD1 CDS67222 810 + 0.504938
NA pCD1 repeat_region55733 15 - 1
NA pCD1 repeat_region58109 1236 + 0.510518
NA YPCD1.24c pCD1 misc_feature15628 219 - 0.461187
NA pCD1 repeat_region58954 391 - 0.473146
NA YPCD1.23 hypothetical proteinpCD1 CDS14681 420 + 0.388095
NA YPCD1.25 pCD1 misc_feature15976 318 + 0.440252
NA YPCD1.92 hypothetical proteinpCD1 CDS66503 330 + 0.281818
NA pCD1 repeat_region25686 8 - 1
NA pCD1 repeat_region61868 6302 - 0.449064
NA pCD1 repeat_region46606 34 - 0.411765
NA pCD1 repeat_region11209 195 + 0.507692
NA YPCD1.85 pCD1 misc_feature59946 362 + 0.502762
NA YPCD1.27 pCD1 pseudo18229 655 + 0.416794
NA pCD1 misc_feature57858 369 - 0.487805
NA YPCD1.09n pCD1 misc_feature4973 425 - 0.458824
NA pCD1 misc_feature11246 158 - 0.531646
NA YPCD1.69 pCD1 misc_feature49044 582 + 0.493127
NA pCD1 repeat_region62808 3065 + 0.502773
NA YPCD1.26.1n pCD1 misc_feature18189 667 + 0.425787
NA YPCD1.16c hypothetical proteinpCD1 CDS9911 324 - 0.481481
NA pCD1 repeat_region68981 1324 - 0.567976
NA pCD1 repeat_region15574 274 - 0.448905
NA pCD1 repeat_region54563 137 + 0.518248
NA pCD1 repeat_region45496 34 + 0.470588
NA pCD1 repeat_region28699 9 + 1
NA YPCD1.01 putative transposasepCD1 CDS88 1023 + 0.527859
NA pCD1 repeat_region10261 40 - 0.425
NA YPCD1.11 pCD1 pseudo5498 132 + 0.469697
NA pCD1 repeat_region54367 333 + 0.498498
NA pCD1 misc_feature1 70305 + 0.448361
NA pCD1 misc_feature68947 1355 - 0.5631
NA pCD1 repeat_region14444 275 + 0.443636
NA YPCD1.80c pCD1 misc_feature58166 486 - 0.512346
NA pCD1 repeat_region67452 612 + 0.495098
NA pCD1 repeat_region59944 395 - 0.496203
NA YPCD1.81 pCD1 misc_feature58307 234 + 0.542735
NA pCD1 misc_feature46267 12624 + 0.464195
NA YPCD1.93 putative transposasepCD1 CDS66932 267 + 0.479401
NA YPCD1.15c hypothetical proteinpCD1 CDS9429 459 - 0.551198
NA pCD1 misc_feature46262 188 + 0.441489
NA YPCD1.73c hypothetical proteinpCD1 CDS53679 450 - 0.451111
NA pCD1 repeat_region1 1956 + 0.514826
NA YPCD1.68c pCD1 misc_feature48811 207 - 0.608696
NA YPCD1.07 hypothetical proteinpCD1 CDS4261 297 + 0.373737
NA YPCD1.96c putative transposasepCD1 CDS68947 432 - 0.569444
NA pCD1 repeat_region66851 40 + 0.45
NA pCD1 misc_feature5046 369 - 0.449865
NA pCD1 repeat_region62474 381 + 0.509186
NA pCD1 misc_feature46267 24034 + 0.463344
NA YPCD1.11 pCD1 pseudo5498 132 + 0.469697
NA pCD1 promoter8324 102 - 0.264706
NA YPCD1.08c hypothetical proteinpCD1 CDS4399 300 - 0.38
NA pCD1 repeat_region9066 40 + 0.425
NA pCD1 repeat_region5813 270 - 0.511111
NA pCD1 repeat_region68981 1321 - 0.568509
NA YPCD1.91n hypothetical proteinpCD1 CDS65900 465 + 0.301075
NA pCD1 misc_feature60307 189 - 0.386243
NA YPCD1.22c hypothetical proteinpCD1 CDS14020 390 - 0.276923
NA pCD1 repeat_region62819 3054 - 0.502292
NA pCD1 repeat_region58855 395 + 0.493671
NA pCD1 repeat_region68026 39 - 0.487179
NA YPCD1.22n pCD1 misc_feature14442 219 - 0.452055
NA YPCD1.02n pCD1 misc_feature1956 352 - 0.485795
NA pCD1 repeat_region18602 329 + 0.43769
NA pCD1 misc_feature18121 777 + 0.42471
NA YPCD1.78n copApCD1 misc_RNA57242 90 + 0.466667
ORFC YPCD1.65 putative transposasepCD1 CDS46302 309 + 0.459547
copB YPCD1.79c replication proteinpCD1 CDS57466 255 - 0.423529
lcrE YPCD1.39c secretion control proteinpCD1 CDS27107 882 - 0.461451
lcrG YPCD1.32c low calcium response protein GpCD1 CDS22917 288 - 0.46875
lcrO YPCD1.58 type III secretion apparatus componentpCD1 CDS42133 348 + 0.468391
lcrQ YPCD1.62 LCR negative regulatorpCD1 CDS44686 348 + 0.479885
lcrR YPCD1.33c low calcium response protein RpCD1 CDS23246 441 - 0.487528
lcrS YPCD1.63 putative transposasepCD1 CDS45581 267 + 0.434457
lcrT YPCD1.64 pCD1 misc_feature45883 389 + 0.452442
lcrV YPCD1.31c secreted effector proteinpCD1 CDS21935 981 - 0.377166
repA1 YPCD1.77c replication proteinpCD1 CDS56291 867 - 0.542099
sopA YPCD1.13c sopAB transcription repressorpCD1 CDS7157 1167 - 0.441302
sopB YPCD1.12c putative plasmid-partitioning control proteinpCD1 CDS6195 963 - 0.417445
sycD YPCD1.30c secretion chaperonepCD1 CDS21416 507 - 0.441815
sycH YPCD1.95c secretion chaperonepCD1 CDS68179 426 - 0.41784
sycN YPCD1.37c hypothetical proteinpCD1 CDS26490 372 - 0.526882
sycT YPCD1.21 YopT chaperonepCD1 CDS13578 399 + 0.411028
tap YPCD1.78c repA translation proteinpCD1 CDS57150 75 - 0.44
tnpA YPCD1.90c putative transposasepCD1 CDS62851 2316 - 0.519862
tnpR YPCD1.91 putative resolvasepCD1 CDS65330 552 + 0.46558
tyeA YPCD1.38c Yop secretion and targeting control proteinpCD1 CDS26848 279 - 0.433692
virF YPCD1.49 transcriptional regulatorpCD1 CDS36112 816 + 0.416667
virG YPCD1.48 needle complex outer membrane lipoprotein precursorpCD1 CDS35593 396 + 0.444444
yadA' YPCD1.87c pCD1 pseudo60565 1304 - 0.431748
yerA YPCD1.05c secretion chaperonepCD1 CDS3014 393 - 0.409669
ylpA YPCD1.17c pCD1 pseudo10338 709 - 0.488011
ylpA YPCD1.17c pCD1 pseudo10338 709 - 0.488011
ylpB YPCD1.59 needle complex inner membrane lipoproteinpCD1 CDS42487 735 + 0.428571
yopB YPCD1.29c secreted effector proteinpCD1 CDS20233 1206 - 0.466833
yopD YPCD1.28c secreted effector proteinpCD1 CDS19294 921 - 0.431053
yopE YPCD1.06 putative outer membrane virulence proteinpCD1 CDS3600 660 + 0.510606
yopH YPCD1.67c putative secreted protein-tyrosine phosphatasepCD1 CDS47122 1407 - 0.474058
yopJ YPCD1.71c targeted effector proteinpCD1 CDS50211 867 - 0.344867
yopM YPCD1.26c secreted effector proteinpCD1 CDS16336 1230 - 0.389431
yopQ YPCD1.19c Yop targeting proteinpCD1 CDS11562 549 - 0.335155
yopR YPCD1.57 secreted proteinpCD1 CDS41635 498 + 0.429719
yopT YPCD1.20 Yop targeted effectorpCD1 CDS12610 969 + 0.431373
ypkA YPCD1.72c secreted protein kinasepCD1 CDS51473 2199 - 0.481583
yscA YPCD1.50 hypothetical proteinpCD1 CDS37006 99 + 0.313131
yscB YPCD1.51 type III secretion apparatus componentpCD1 CDS37330 414 + 0.417874
yscC YPCD1.52 outer membrane secretin precursorpCD1 CDS37749 1824 + 0.454496
yscD YPCD1.53 virulence proteinpCD1 CDS39569 1260 + 0.46746
yscE YPCD1.54 type III secretion apparatus componentpCD1 CDS40825 201 + 0.422886
yscF YPCD1.55 needle complex major subunitpCD1 CDS41026 264 + 0.416667
yscG YPCD1.56 type III secretion apparatus componentpCD1 CDS41291 348 + 0.439655
yscK YPCD1.60 type III secretion apparatus componentpCD1 CDS43221 630 + 0.485714
yscL YPCD1.61 type III secretion proteinpCD1 CDS43796 666 + 0.448949
yscN YPCD1.40 type III secretion system ATPasepCD1 CDS28186 1320 + 0.508333
yscO YPCD1.41 type III secretion apparatus componentpCD1 CDS29502 465 + 0.458065
yscP YPCD1.42 type III secretion apparatus componentpCD1 CDS29966 1368 + 0.486842
yscQ YPCD1.43 type III secretion proteinpCD1 CDS31330 924 + 0.481602
yscR YPCD1.44 needle complex export proteinpCD1 CDS32250 654 + 0.43578
yscS YPCD1.45 needle complex export proteinpCD1 CDS32905 267 + 0.453184
yscT YPCD1.46 needle complex export proteinpCD1 CDS33168 786 + 0.428753
yscU YPCD1.47 needle complex export proteinpCD1 CDS33953 1065 + 0.431925
yscV YPCD1.34c low calcium response protein DpCD1 CDS23683 2115 - 0.463357
yscX YPCD1.36c hypothetical proteinpCD1 CDS26125 369 - 0.495935
yscY YPCD1.35c hypothetical proteinpCD1 CDS25784 345 - 0.46087