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2024-05-23 17:51:16

Gene list

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Genomic element: pHCM2

Number of genes found: 245

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pHCM2 RBS62309 4 - 0.75
NA pHCM2 repeat_region77707 59 - 0.40678
NA HCM2.0069c hypothetical proteinpHCM2 CDS58795 1575 - 0.512381
NA pHCM2 repeat_region22924 20 - 0.6
NA pHCM2 RBS3869 6 - 0.5
NA pHCM2 repeat_region70443 25 - 0.56
NA pHCM2 RBS34520 5 - 0.8
NA HCM2.0116c hypothetical proteinpHCM2 CDS90068 645 - 0.551938
NA HCM2.0032c hypothetical proteinpHCM2 CDS24071 153 - 0.51634
NA HCM2.0090c hypothetical proteinpHCM2 CDS73481 219 - 0.547945
NA HCM2.0038c hypothetical proteinpHCM2 CDS26510 795 - 0.544654
NA pHCM2 RBS58779 5 - 0.4
NA HCM2.0125c hypothetical proteinpHCM2 CDS98804 1917 - 0.53782
NA pHCM2 misc_recomb73940 57 + 0.333333
NA HCM2.0079 hypothetical proteinpHCM2 CDS67546 279 + 0.448029
NA pHCM2 misc_recomb1565 57 + 0.333333
NA HCM2.0121c ribonucleotide-diphosphate reductase beta subunitpHCM2 CDS93843 1143 - 0.527559
NA pHCM2 RBS93773 5 - 0.4
NA pHCM2 RBS79222 5 - 0.8
NA HCM2.0126c hypothetical proteinpHCM2 CDS100717 237 - 0.49789
NA HCM2.0088c hypothetical proteinpHCM2 CDS72684 312 - 0.541667
NA HCM2.0007c hypothetical proteinpHCM2 CDS2493 201 - 0.437811
NA HCM2.0102c hypothetical proteinpHCM2 CDS80429 174 - 0.522988
NA HCM2.0024c hypothetical proteinpHCM2 CDS18507 381 - 0.496063
NA HCM2.0022 hypothetical proteinpHCM2 CDS17606 492 + 0.408537
NA HCM2.0089c hypothetical proteinpHCM2 CDS73072 315 - 0.463492
NA pHCM2 RBS102044 5 - 0.4
NA HCM2.0098c hypothetical proteinpHCM2 CDS78355 312 - 0.525641
NA pHCM2 repeat_region105843 21 + 0.47619
NA pHCM2 repeat_region23364 19 - 0.526316
NA HCM2.0075c putative ABC transporter ATP-binding proteinpHCM2 CDS63918 639 - 0.544601
NA HCM2.0099c hypothetical proteinpHCM2 CDS78675 543 - 0.499079
NA HCM2_t01 tRNA-AsnpHCM2 tRNA22945 75 - 0.546667
NA HCM2.0004c hypothetical proteinpHCM2 CDS719 411 - 0.557178
NA pHCM2 RBS78366 4 - 0.75
NA pHCM2 repeat_region106230 21 - 0.47619
NA HCM2.0084 hypothetical proteinpHCM2 CDS70208 228 + 0.372807
NA pHCM2 RBS79862 4 - 0.75
NA pHCM2 RBS40225 6 - 0.5
NA HCM2.0066c hypothetical proteinpHCM2 CDS55976 924 - 0.549784
NA HCM2.0027c hypothetical proteinpHCM2 CDS20003 555 - 0.421622
NA HCM2.0113c hypothetical proteinpHCM2 CDS88047 927 - 0.508091
NA pHCM2 RBS77273 7 - 0.428571
NA HCM2.0056c hypothetical proteinpHCM2 CDS46858 336 - 0.488095
NA pHCM2 RBS21399 4 - 0.75
NA pHCM2 misc_recomb73005 57 + 0.350877
NA HCM2.0059c hypothetical proteinpHCM2 CDS52176 318 - 0.506289
NA pHCM2 RBS658 6 - 0.5
NA pHCM2 repeat_region106025 21 - 0.428571
NA pHCM2 RBS83755 6 - 0.333333
NA HCM2.0020c hypothetical proteinpHCM2 CDS16239 891 - 0.50954
NA HCM2.0028c putative lipoproteinpHCM2 CDS20835 555 - 0.461261
NA pHCM2 repeat_region104296 21 + 0.47619
NA HCM2.0107c hypothetical proteinpHCM2 CDS84806 189 - 0.502645
NA HCM2.0030c hypothetical proteinpHCM2 CDS22471 291 - 0.388316
NA HCM2.0105c hypothetical proteinpHCM2 CDS83174 573 - 0.516579
NA HCM2.0112c hypothetical proteinpHCM2 CDS87268 594 - 0.542088
NA pHCM2 RBS71558 5 - 0.4
NA pHCM2 repeat_region105915 21 + 0.47619
NA HCM2.0067c hypothetical proteinpHCM2 CDS56974 876 - 0.537671
NA pHCM2 RBS65977 5 + 0.6
NA HCM2.0042c hypothetical proteinpHCM2 CDS31217 726 - 0.524793
NA HCM2.0017c hypothetical proteinpHCM2 CDS13115 2163 - 0.518262
NA pHCM2 RBS67865 6 + 0.333333
NA HCM2.0095c hypothetical proteinpHCM2 CDS77352 282 - 0.450355
NA HCM2.0114c hypothetical proteinpHCM2 CDS89018 558 - 0.544803
NA pHCM2 RBS52503 5 - 0.4
NA pHCM2 RBS37223 5 - 0.6
NA HCM2.0047 hypothetical proteinpHCM2 CDS35508 552 + 0.463768
NA pHCM2 RBS15285 5 - 0.4
NA HCM2.0117c putative dihydrofolate reductasepHCM2 CDS90712 477 - 0.536688
NA pHCM2 RBS24435 6 - 0.333333
NA pHCM2 repeat_region104635 21 + 0.52381
NA HCM2.0050c hypothetical proteinpHCM2 CDS37229 324 - 0.493827
NA pHCM2 RBS80328 6 - 0.333333
NA HCM2.0034c hypothetical proteinpHCM2 CDS24419 177 - 0.457627
NA HCM2.0054c hypothetical proteinpHCM2 CDS45280 798 - 0.546366
NA pHCM2 repeat_region62412 24 + 0.375
NA pHCM2 repeat_region106065 21 + 0.571429
NA HCM2.0033c hypothetical proteinpHCM2 CDS24223 207 - 0.478261
NA pHCM2 RBS27312 4 - 0.75
NA pHCM2 RBS6723 4 - 0.75
NA pHCM2 RBS37558 5 - 0.8
NA pHCM2 RBS25927 6 - 0.666667
NA HCM2.0076c hypothetical proteinpHCM2 CDS64553 669 - 0.559043
NA HCM2.0055c putative phage tail proteinpHCM2 CDS46070 732 - 0.519126
NA HCM2.0118c hypothetical proteinpHCM2 CDS91185 414 - 0.548309
NA pHCM2 RBS62772 6 - 0.333333
NA HCM2.0016c putative porphyrin biosynthetic proteinpHCM2 CDS11783 1236 - 0.530744
NA pHCM2 RBS72045 5 - 0.8
NA HCM2.0085c hypothetical proteinpHCM2 CDS71067 483 - 0.509317
NA HCM2.0058c hypothetical proteinpHCM2 CDS51826 270 - 0.559259
NA pHCM2 RBS90013 5 - 0.6
NA pHCM2 stem_loop62412 69 + 0.333333
NA pHCM2 RBS1137 5 - 0.6
NA pHCM2 RBS74060 4 + 0.75
NA pHCM2 repeat_region106104 21 + 0.428571
NA pHCM2 RBS76947 5 - 0.6
NA HCM2.0130c hypothetical proteinpHCM2 CDS103369 645 - 0.536434
NA HCM2.0097c hypothetical proteinpHCM2 CDS78071 288 - 0.496528
NA pHCM2 RBS91195 5 - 0.6
NA HCM2.0122c ribonucleotide-diphosphate reductase alpha subunitpHCM2 CDS95093 2316 - 0.547496
NA pHCM2 RBS77795 7 + 0.571429
NA pHCM2 repeat_region105882 21 + 0.428571
NA pHCM2 misc_recomb83765 57 + 0.421053
NA HCM2.0001c hypothetical proteinpHCM2 CDS106342 204 - 0.558824
NA pHCM2 RBS53762 5 - 0.6
NA pHCM2 RBS18514 5 - 0.6
NA pHCM2 repeat_region104677 21 + 0.52381
NA HCM2.0006c putative lipoproteinpHCM2 CDS1647 843 - 0.5172
NA pHCM2 RBS6943 5 + 0.4
NA pHCM2 RBS51830 4 - 0.75
NA pHCM2 repeat_region104231 21 + 0.428571
NA HCM2.0018c hypothetical proteinpHCM2 CDS15387 213 - 0.446009
NA HCM2.0062c hypothetical proteinpHCM2 CDS53759 474 - 0.552743
NA HCM2.111c hypothetical proteinpHCM2 CDS86835 231 - 0.471861
NA pHCM2 RBS1492 6 - 0.5
NA pHCM2 repeat_region104656 21 + 0.428571
NA HCM2.0081 putative transcriptional regulatorpHCM2 CDS68311 528 + 0.505682
NA pHCM2 RBS90717 4 - 0.5
NA pHCM2 repeat_region87184 26 + 0.269231
NA pHCM2 repeat_region23453 23 + 0.478261
NA HCM2.0096 hypothetical proteinpHCM2 CDS77807 204 + 0.490196
NA HCM2.0074c hypothetical proteinpHCM2 CDS63671 255 - 0.529412
NA pHCM2 repeat_region105814 21 + 0.52381
NA pHCM2 RBS4138 5 - 0.6
NA pHCM2 RBS98824 4 - 0.75
NA HCM2.0045c hypothetical proteinpHCM2 CDS34153 360 - 0.525
NA HCM2.0010c putative exonucleasepHCM2 CDS4130 945 - 0.529101
NA HCM2.0025c hypothetical proteinpHCM2 CDS18903 204 - 0.519608
NA HCM2.0011c hypothetical proteinpHCM2 CDS5135 1029 - 0.524781
NA HCM2.0063c hypothetical proteinpHCM2 CDS54223 345 - 0.536232
NA pHCM2 stem_loop87184 57 + 0.298246
NA pHCM2 RBS2699 5 - 0.4
NA HCM2.0005c hypothetical proteinpHCM2 CDS1113 372 - 0.526882
NA HCM2.0106c hypothetical proteinpHCM2 CDS83855 843 - 0.500593
NA pHCM2 RBS89581 7 - 0.428571
NA HCM2.0103c hypothetical proteinpHCM2 CDS80599 690 - 0.534783
NA HCM2.0077c hypothetical proteinpHCM2 CDS65221 699 - 0.532189
NA HCM2.0026c putative PhoH-like proteinpHCM2 CDS19116 834 - 0.526379
NA HCM2.0124c hypothetical proteinpHCM2 CDS98068 747 - 0.497992
NA HCM2.0048c hypothetical proteinpHCM2 CDS36110 345 - 0.501449
NA pHCM2 RBS5082 6 - 0.5
NA HCM2.0060c hypothetical proteinpHCM2 CDS52553 747 - 0.546185
NA pHCM2 RBS8099 4 - 0.75
NA HCM2.0123c hypothetical proteinpHCM2 CDS97486 570 - 0.522807
NA pHCM2 repeat_region62457 24 - 0.416667
NA HCM2.0120c hypothetical proteinpHCM2 CDS92831 930 - 0.497849
NA HCM2.0031c hypothetical proteinpHCM2 CDS23769 306 - 0.48366
NA pHCM2 RBS31946 4 - 0.75
NA pHCM2 repeat_region104273 21 + 0.52381
NA HCM2.0080 putative lipoproteinpHCM2 CDS67884 423 + 0.548463
NA pHCM2 misc_recomb77276 57 + 0.245614
NA HCM2.0093c hypothetical proteinpHCM2 CDS75750 1191 - 0.437448
NA pHCM2 repeat_region104593 21 + 0.380952
NA HCM2.0041c putative DNA helicasepHCM2 CDS29816 1341 - 0.548844
NA HCM2.0083 hypothetical proteinpHCM2 CDS69473 651 + 0.396313
NA pHCM2 repeat_region77235 59 + 0.38983
NA HCM2.0012 hypothetical proteinpHCM2 CDS6283 432 - 0.525463
NA pHCM2 RBS87074 6 - 0.333333
NA HCM2.0009c hypothetical proteinpHCM2 CDS3864 267 - 0.543071
NA pHCM2 repeat_region87215 26 - 0.307692
NA HCM2.0115c hypothetical proteinpHCM2 CDS89585 420 - 0.540476
NA pHCM2 repeat_region104210 21 + 0.47619
NA HCM2.0061c hypothetical proteinpHCM2 CDS53374 384 - 0.476562
NA HCM2.0014c hypothetical proteinpHCM2 CDS7644 444 - 0.527027
NA HCM2.0091c hypothetical proteinpHCM2 CDS73710 216 - 0.518519
NA HCM2.0070c hypothetical proteinpHCM2 CDS60403 1257 - 0.544153
NA pHCM2 RBS22206 6 - 0.333333
NA pHCM2 repeat_region106149 21 - 0.428571
NA pHCM2 RBS98064 7 - 0.428571
NA HCM2.0039 hypothetical proteinpHCM2 CDS27488 1053 + 0.415005
NA pHCM2 RBS19113 6 - 0.333333
NA pHCM2 repeat_region106317 21 - 0.571429
NA pHCM2 RBS47200 5 - 0.4
NA HCM2.0036c hypothetical proteinpHCM2 CDS25952 258 - 0.515504
NA pHCM2 misc_recomb71561 57 + 0.368421
NA HCM2.0049c hypothetical proteinpHCM2 CDS36523 693 - 0.561328
NA HCM2.0019 hypothetical proteinpHCM2 CDS15861 387 + 0.488372
NA pHCM2 misc_recomb83042 57 + 0.280702
NA HCM2.0128 hypothetical proteinpHCM2 CDS102462 306 + 0.486928
NA HCM2.0029c hypothetical proteinpHCM2 CDS21468 729 - 0.447188
NA HCM2.0087c hypothetical proteinpHCM2 CDS72163 393 - 0.48855
NA HCM2.0008c putative recombinasepHCM2 CDS2785 1077 - 0.552461
NA pHCM2 RBS18895 6 - 0.333333
NA HCM2.0052c putative phage tail proteinpHCM2 CDS40302 4389 - 0.512417
NA HCM2.0094c hypothetical proteinpHCM2 CDS76950 318 - 0.525157
NA pHCM2 repeat_region104699 21 + 0.380952
NA HCM2.0129c hypothetical proteinpHCM2 CDS102799 495 - 0.519192
NA HCM2.0071c putative DNA-binding proteinpHCM2 CDS61662 642 - 0.551402
NA pHCM2 RBS73002 4 - 0.75
NA HCM2.0078 putative helicasepHCM2 CDS65984 1560 + 0.514744
NA HCM2.0065c hypothetical proteinpHCM2 CDS55498 435 - 0.51954
NA HCM2.0046c hypothetical proteinpHCM2 CDS34512 666 - 0.489489
NA pHCM2 RBS65230 6 - 0.5
NA HCM2.0051c putative phage tail proteinpHCM2 CDS37667 2553 - 0.46181
NA pHCM2 repeat_region22861 20 + 0.6
NA pHCM2 RBS78671 4 - 0.75
NA pHCM2 RBS72562 4 - 0.75
NA HCM2.0072c hypothetical proteinpHCM2 CDS62499 267 - 0.520599
NA HCM2.0057c hypothetical proteinpHCM2 CDS47235 4584 - 0.563482
NA HCM2.0068c hypothetical proteinpHCM2 CDS57876 897 - 0.556299
NA pHCM2 RBS73932 6 - 0.5
NA pHCM2 repeat_region70130 25 + 0.56
NA HCM2.0064c hypothetical proteinpHCM2 CDS54665 834 - 0.535971
NA HCM2.0101c hypothetical proteinpHCM2 CDS79947 372 - 0.489247
NA HCM2.0086c hypothetical proteinpHCM2 CDS71755 288 - 0.53125
NA HCM2.0053c putative phage tail proteinpHCM2 CDS44705 588 - 0.530612
NA pHCM2 RBS13026 6 - 0.333333
NA HCM2.0021 hypothetical proteinpHCM2 CDS17197 189 + 0.47619
NA pHCM2 misc_recomb72053 57 + 0.333333
NA pHCM2 RBS100958 5 - 0.8
NA pHCM2 RBS60377 5 - 0.4
NA HCM2.0100c hypothetical proteinpHCM2 CDS79214 642 - 0.538941
NA pHCM2 RBS6170 6 - 0.5
NA HCM2.0073c hypothetical proteinpHCM2 CDS62775 900 - 0.556667
NA pHCM2 RBS69459 6 + 0.333333
NA pHCM2 RBS84703 4 - 0.75
NA HCM2.0002c putative periplasmic proteinpHCM2 CDS29 306 - 0.477124
NA pHCM2 RBS56906 5 - 0.6
NA pHCM2 RBS36 8 - 0.5
NA pHCM2 RBS100726 5 - 0.6
NA HCM2.0040c hypothetical proteinpHCM2 CDS28542 1212 - 0.519802
NA pHCM2 RBS53310 6 - 0.5
NA HCM2.0127c hypothetical proteinpHCM2 CDS100950 1086 - 0.544199
NA pHCM2 RBS2499 7 - 0.428571
NA HCM2.0109c putative ribonuclease HpHCM2 CDS85641 609 - 0.54023
NA HCM2.0003c hypothetical proteinpHCM2 CDS375 276 - 0.481884
NA HCM2.0013 hypothetical proteinpHCM2 CDS6960 591 + 0.328257
NA HCM2.0015c putative DNA polymerase III alpha subunitpHCM2 CDS8084 3519 - 0.547883
NA HCM2.0092 hypothetical proteinpHCM2 CDS74068 246 + 0.52439
NA HCM2.0023c putative glutaredoxinpHCM2 CDS18262 246 - 0.50813
NA pHCM2 RBS73393 4 - 0.75
NA HCM2.0104c putative DNA modification methylasepHCM2 CDS81347 1704 - 0.526995
NA pHCM2 repeat_region104252 21 + 0.380952
NA pHCM2 repeat_region23520 23 - 0.478261
NA HCM2.0119c putative thymidylate synthasepHCM2 CDS91600 1116 - 0.540323
NA HCM2.0035c putative DNA ligasepHCM2 CDS24595 1323 - 0.529101
NA pHCM2 repeat_region106189 21 - 0.380952
NA pHCM2 repeat_region106270 21 - 0.380952
NA pHCM2 RBS81295 5 - 0.6
NA HCM2.0044c hypothetical proteinpHCM2 CDS33349 756 - 0.386243
NA HCM2.0082 putative periplasmic proteinpHCM2 CDS68842 309 + 0.485437
NA HCM2.0043 hypothetical proteinpHCM2 CDS32224 1056 + 0.453598
repA HCM2.0131 putative replication protein ApHCM2 CDS104758 1056 + 0.511364