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2024-05-23 18:39:30

Gene list

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Genomic element: pYVe8081

Number of genes found: 200

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia enterocolitica subsp. enterocolitica 8081, 8081
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YEP0057 hypothetical proteinpYVe8081 CDS41132 303 - 0.386139
NA pYVe8081 repeat_unit42728 45 + 0.555556
NA YEP0095 putative plasmid copy number control proteinpYVe8081 CDS65993 246 + 0.418699
NA YEP0093 pYVe8081 pseudo64481 321 + 0.588785
NA YEP0096 putative leader peptide RepBpYVe8081 CDS66500 57 + 0.508772
NA YEP0007 pYVe8081 misc_feature6122 69 - 0.42029
NA YEP0078 pYVe8081 pseudo55010 117 - 0.512821
NA YEP0064 pYVe8081 pseudo45764 93 - 0.376344
NA YEP0084 pYVe8081 pseudo59262 132 + 0.545455
NA pYVe8081 repeat_region64448 742 + 0.528302
NA pYVe8081 repeat_region65191 710 + 0.464789
NA YEP0059 pYVe8081 pseudo41813 321 - 0.448598
NA YEP0088 pYVe8081 pseudo61010 558 - 0.480287
NA pYVe8081 repeat_region39712 476 - 0.497899
NA pYVe8081 repeat_unit54556 20 - 0.65
NA YEP0050 pYVe8081 misc_feature36715 714 + 0.44958
NA YEP0054 pYVe8081 pseudo39756 330 - 0.487879
NA YEP0089 hypothetical proteinpYVe8081 CDS61617 552 - 0.429348
NA YEP0001 putative transposasepYVe8081 CDS628 660 + 0.477273
NA YEP0066 pYVe8081 misc_feature47057 234 - 0.470085
NA YEP0062 pYVe8081 misc_feature44118 339 - 0.424779
NA YEP0088 pYVe8081 pseudo61007 564 - 0.47695
NA YEP0072 hypothetical proteinpYVe8081 CDS51245 630 - 0.463492
NA YEP0009 pYVe8081 pseudo7424 174 + 0.402299
NA pYVe8081 misc_feature46115 852 - 0.341549
NA pYVe8081 repeat_unit42593 45 + 0.533333
NA YEP0049 hypothetical proteinpYVe8081 CDS35593 168 + 0.39881
NA pYVe8081 repeat_region48835 645 + 0.468217
NA pYVe8081 repeat_region1206 444 - 0.466216
NA YEP0058 pYVe8081 misc_feature41442 228 - 0.460526
NA YEP0049 pYVe8081 misc_feature35617 60 + 0.433333
NA YEP0052 putative YopE chaperonepYVe8081 CDS38462 393 - 0.409669
NA pYVe8081 repeat_unit1638 12 - 0.416667
NA YEP0092 pYVe8081 misc_feature63301 678 - 0.556047
NA YEP0092 pYVe8081 repeat_unit63031 15 - 0.4
NA YEP0073 pYVe8081 misc_feature52109 573 - 0.558464
NA pYVe8081 repeat_unit65170 20 + 0.4
NA YEP0007 hypothetical proteinpYVe8081 CDS6065 138 - 0.434783
NA YEP0092 transposase for insertion sequence element IS4pYVe8081 CDS63019 1338 - 0.560538
NA pYVe8081 repeat_unit62168 16 + 0.375
NA YEP0069 transposasepYVe8081 CDS49605 1203 + 0.481297
NA YEP0082 pYVe8081 pseudo58175 127 + 0.417323
NA pYVe8081 repeat_unit42683 45 + 0.533333
NA YEP0066 putative YadA invasinpYVe8081 CDS47054 1269 - 0.42238
NA YEP0055 pYVe8081 pseudo40240 555 - 0.500901
NA YEP0069 pYVe8081 misc_feature50001 729 + 0.489712
NA YEP0051 putative yopH targeting proteinpYVe8081 CDS37677 432 - 0.416667
NA YEP0076 pYVe8081 pseudo54207 303 - 0.468647
NA YEP0069 pYVe8081 misc_feature49608 393 + 0.478372
NA YEP0056 pYVe8081 pseudo40794 150 - 0.473333
NA pYVe8081 repeat_unit64424 16 - 0.375
NA YEP0075 pYVe8081 pseudo53671 477 + 0.467505
NA YEP0061 pYVe8081 misc_feature43423 264 - 0.454545
NA YEP0008 pYVe8081 pseudo6479 461 - 0.427332
NA YEP0053 pYVe8081 sig_peptide39047 69 + 0.42029
NA YEP0090 transposase for insertion sequence element IS1665pYVe8081 CDS62177 786 - 0.559796
NA pYVe8081 repeat_unit42548 45 + 0.533333
NA YEP0003 putative transposasepYVe8081 CDS1674 435 + 0.51954
NA YEP0011 pYVe8081 misc_feature9079 69 + 0.449275
NA pYVe8081 repeat_unit42773 36 + 0.472222
NA YEP0007 pYVe8081 sig_peptide6146 57 - 0.421053
NA YEP0050 putative protein-tyrosine phosphatase Yop effectorpYVe8081 CDS36049 1407 + 0.468372
NA YEP0066 pYVe8081 sig_peptide48248 75 - 0.386667
NA pYVe8081 misc_feature15203 882 - 0.484127
NA YEP0061 putative plasmid partitioning control proteinpYVe8081 CDS42931 963 - 0.417445
NA YEP0009 pYVe8081 pseudo7099 583 + 0.45283
NA pYVe8081 repeat_unit42638 45 + 0.533333
NA YEP0071 hypothetical proteinpYVe8081 CDS50937 309 - 0.443366
NA YEP0074 hypothetical proteinpYVe8081 CDS52920 198 - 0.550505
NA YEP0009 pYVe8081 pseudo7111 252 + 0.488095
NA YEP0050 pYVe8081 misc_feature37249 39 + 0.589744
NA YEP0078 pYVe8081 pseudo54959 177 - 0.531073
NA YEP0093 pYVe8081 pseudo64448 468 + 0.576923
NA pYVe8081 repeat_region40786 214 - 0.457944
NA YEP0003 pYVe8081 misc_feature1674 414 + 0.519324
NA YEP0058 hypothetical proteinpYVe8081 CDS41427 243 - 0.44856
NA YEP0011 hypothetical proteinpYVe8081 CDS8950 219 + 0.410959
NA YEP0054 pYVe8081 pseudo39747 426 - 0.495305
NA YEP0053 pYVe8081 misc_feature39425 207 + 0.570048
NA YEP0080 hypothetical proteinpYVe8081 CDS55297 432 + 0.444444
NA pYVe8081 repeat_region62168 878 + 0.544419
NA pYVe8081 repeat_region54207 369 - 0.485095
NA YEP0053 putative outer membrane virulence proteinpYVe8081 CDS39047 660 + 0.510606
NA YEP0062 putative plasmid partitioning transcription repressorpYVe8081 CDS43893 1167 - 0.44473
NA YEP0062 pYVe8081 misc_feature44832 108 - 0.472222
NA YEP0090 pYVe8081 misc_feature62507 7 - 0.142857
NA pYVe8081 misc_feature60319 171 + 0.48538
NA YEP0063 hypothetical proteinpYVe8081 CDS45373 216 - 0.541667
NA pYVe8081 misc_feature41015 165 + 0.393939
NA YEP0075 pYVe8081 pseudo53569 579 + 0.476684
NA pYVe8081 repeat_region63031 1410 + 0.553191
NA YEP0073 putative resolvase/recombinasepYVe8081 CDS52049 735 - 0.553742
NA pYVe8081 rep_origin1 650 + 0.432308
lcrD YEP0018 low calcium response locus membrane protein dpYVe8081 CDS14027 2115 - 0.460993
lcrD YEP0018 pYVe8081 misc_feature15659 72 - 0.486111
lcrD YEP0018 pYVe8081 misc_feature14054 2013 - 0.461997
lcrD YEP0018 pYVe8081 misc_feature15197 33 - 0.454545
lcrG YEP0016 low calcium response locus protein gpYVe8081 CDS13261 288 - 0.465278
lcrR YEP0017 low calcium response locus protein RpYVe8081 CDS13590 441 - 0.489796
lcrV YEP0015 virulence-associated V antigenpYVe8081 CDS12285 975 - 0.368205
lcrV YEP0015 pYVe8081 misc_feature12291 969 - 0.368421
repA YEP0097 replication initiation proteinpYVe8081 CDS66549 1023 + 0.442815
sycD YEP0014 yopB/D chaperone/regulatory proteinpYVe8081 CDS11776 507 - 0.443787
sycN YEP0021 YopN chaperone SycNpYVe8081 CDS16834 372 - 0.518817
sycT YEP0006 chaperone of YopTpYVe8081 CDS4320 393 + 0.414758
tnp YEP0094 pYVe8081 misc_feature65387 312 + 0.455128
tnp YEP0094 transposase for IS1541pYVe8081 CDS65333 459 + 0.461874
tnpA YEP0087 pYVe8081 pseudo60325 685 + 0.50365
trp1400A YEP0067 pYVe8081 pseudo48870 54 + 0.388889
trp1400A YEP0002 IS1400 transposase ApYVe8081 CDS1284 288 - 0.46875
trp1400B YEP0068 pYVe8081 pseudo48925 555 + 0.484685
trp1400B YEP0068 pYVe8081 pseudo49096 222 + 0.527027
trp1400B YEP0068 pYVe8081 pseudo49336 144 + 0.375
tyeA YEP0022 type III secretion system proteinpYVe8081 CDS17192 279 - 0.433692
virF YEP0035 virulence regulon transcriptional activatorpYVe8081 CDS26450 816 + 0.410539
virF YEP0035 pYVe8081 misc_feature27110 132 + 0.44697
virF YEP0035 pYVe8081 misc_feature26954 138 + 0.413043
virF YEP0035 pYVe8081 misc_feature27098 129 + 0.418605
virG YEP0033 pYVe8081 misc_feature25946 33 + 0.393939
virG YEP0033 pYVe8081 sig_peptide25931 75 + 0.466667
virG YEP0033 putative type III secretion effector targeting lipoproteinpYVe8081 CDS25931 396 + 0.444444
yomA YEP0065 pYVe8081 misc_feature46118 381 - 0.335958
yomA YEP0065 pYVe8081 misc_feature46562 375 - 0.344
yomA YEP0065 hypothetical proteinpYVe8081 CDS46109 876 - 0.336758
yomA YEP0065 pYVe8081 sig_peptide46925 60 - 0.283333
yopB YEP0013 pYVe8081 misc_feature11235 69 - 0.565217
yopB YEP0013 pYVe8081 misc_feature10596 1203 - 0.463009
yopB YEP0013 virulence plasmid YopB transmembrane effector proteinpYVe8081 CDS10593 1206 - 0.461857
yopD YEP0012 translocator proteinpYVe8081 CDS9654 921 - 0.432139
yopJ YEP0083 putative targeted effector proteinpYVe8081 CDS58302 867 + 0.349481
yopJ YEP0083 pYVe8081 misc_feature58392 633 + 0.364929
yopM YEP0010 pYVe8081 misc_feature8243 66 - 0.393939
yopM YEP0010 pYVe8081 misc_feature8486 69 - 0.42029
yopM YEP0010 yop type III secretion system effector proteinpYVe8081 CDS7724 1104 - 0.400362
yopM YEP0010 pYVe8081 misc_feature7805 78 - 0.487179
yopM YEP0010 pYVe8081 misc_feature8114 69 - 0.362319
yopM YEP0010 pYVe8081 misc_feature8369 66 - 0.439394
yopM YEP0010 pYVe8081 misc_feature7934 69 - 0.434783
yopN YEP0023 type III secretion outer membrane proteinpYVe8081 CDS17451 882 - 0.461451
yopO YEP0081 pYVe8081 misc_feature56142 819 + 0.47619
yopO YEP0081 putative targeted effector protein kinasepYVe8081 CDS55746 2190 + 0.483105
yopO YEP0081 pYVe8081 misc_feature56532 39 + 0.333333
yopQ YEP0004 virulence plasmid proteinpYVe8081 CDS2291 549 - 0.333333
yopQ YEP0004 pYVe8081 misc_feature2294 12 - 0.333333
yopT YEP0005 plasmid type III secretion system effector proteinpYVe8081 CDS3352 969 + 0.432405
yopT YEP0005 pYVe8081 misc_feature3409 738 + 0.448509
yscA YEP0036 pYVe8081 misc_feature27378 60 + 0.366667
yscA YEP0036 conserved hypothetical hydrophobic proteinpYVe8081 CDS27345 99 + 0.323232
yscB YEP0037 hypothetical proteinpYVe8081 CDS27668 414 + 0.42029
yscC YEP0038 pYVe8081 misc_feature28636 294 + 0.493197
yscC YEP0038 pYVe8081 misc_feature28933 684 + 0.453216
yscC YEP0038 putative type III secretion proteinpYVe8081 CDS28087 1824 + 0.45614
yscC YEP0038 pYVe8081 sig_peptide28087 78 + 0.474359
yscC YEP0038 pYVe8081 misc_feature29449 102 + 0.421569
yscC YEP0038 pYVe8081 misc_feature28417 192 + 0.505208
yscD YEP0039 putative type III secretion proteinpYVe8081 CDS29907 1257 + 0.466985
yscD YEP0039 pYVe8081 misc_feature30276 69 + 0.434783
yscE YEP0040 putative type III secretion proteinpYVe8081 CDS31160 204 + 0.426471
yscF YEP0041 putative type III secretion proteinpYVe8081 CDS31360 264 + 0.435606
yscG YEP0042 putative type III secretion proteinpYVe8081 CDS31625 348 + 0.442529
yscH YEP0043 pYVe8081 sig_peptide31969 57 + 0.438596
yscH YEP0043 putative type III secretion proteinpYVe8081 CDS31969 498 + 0.433735
yscI YEP0044 putative type III secretion proteinpYVe8081 CDS32467 348 + 0.474138
yscJ YEP0045 pYVe8081 misc_feature33472 69 + 0.362319
yscJ YEP0045 pYVe8081 misc_feature32845 33 + 0.272727
yscJ YEP0045 pYVe8081 misc_feature32821 585 + 0.441026
yscJ YEP0045 type III secretion lipoproteinpYVe8081 CDS32821 735 + 0.434014
yscJ YEP0045 pYVe8081 sig_peptide32821 63 + 0.301587
yscK YEP0046 type III secretion proteinpYVe8081 CDS33555 630 + 0.487302
yscL YEP0047 pYVe8081 misc_feature34178 33 + 0.424242
yscL YEP0047 putative type III secretion proteinpYVe8081 CDS34130 672 + 0.44494
yscM YEP0048 putative type III secretion regulatory proteinpYVe8081 CDS35020 348 + 0.485632
yscM2 YEP0086 regulatory proteinpYVe8081 CDS59787 351 + 0.37037
yscN YEP0024 pYVe8081 misc_feature19574 30 + 0.533333
yscN YEP0024 probable type III secretion system ATP synthasepYVe8081 CDS18530 1320 + 0.506818
yscN YEP0024 pYVe8081 misc_feature18608 198 + 0.449495
yscN YEP0024 pYVe8081 misc_feature18812 810 + 0.52716
yscN YEP0024 pYVe8081 misc_feature19034 24 + 0.791667
yscO YEP0025 type III secretion system translocation proteinpYVe8081 CDS19846 465 + 0.464516
yscP YEP0026 putative type III secretion proteinpYVe8081 CDS20310 1362 + 0.487518
yscQ YEP0027 putative type III secretion proteinpYVe8081 CDS21668 924 + 0.483766
yscQ YEP0027 pYVe8081 misc_feature22352 231 + 0.519481
yscR YEP0028 pYVe8081 misc_feature22612 519 + 0.427746
yscR YEP0028 pYVe8081 misc_feature22624 600 + 0.431667
yscR YEP0028 pYVe8081 misc_feature23161 39 + 0.333333
yscR YEP0028 pYVe8081 sig_peptide22588 102 + 0.372549
yscR YEP0028 putative type III secretion proteinpYVe8081 CDS22588 654 + 0.428135
yscR YEP0028 pYVe8081 misc_feature23017 48 + 0.479167
yscS YEP0029 pYVe8081 sig_peptide23243 84 + 0.488095
yscS YEP0029 putative type III secretion proteinpYVe8081 CDS23243 267 + 0.453184
yscS YEP0029 pYVe8081 misc_feature23252 228 + 0.469298
yscS YEP0029 pYVe8081 misc_feature23279 174 + 0.494253
yscT YEP0030 pYVe8081 misc_feature23533 681 + 0.437592
yscT YEP0030 pYVe8081 misc_feature23521 744 + 0.432796
yscT YEP0030 putative type III secretion proteinpYVe8081 CDS23506 786 + 0.428753
yscU YEP0031 putative type III secretion proteinpYVe8081 CDS24291 1065 + 0.437559
yscU YEP0031 pYVe8081 misc_feature24372 543 + 0.425414
yscU YEP0031 pYVe8081 misc_feature24291 1026 + 0.44152
yscX YEP0020 hypothetical proteinpYVe8081 CDS16469 369 - 0.498645
yscY YEP0019 hypothetical proteinpYVe8081 CDS16128 345 - 0.452174