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2024-05-10 09:16:51

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones

Number of genes found: 4451

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Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ahpC BU182 alkyl hydroperoxide reductasechromosome CDS199160 594 - 0.304714
clpP BU475 ATP-dependent Clp protease proteolytic subunitchromosome CDS519898 627 + 0.291866
clpX BU476 ATP-dependent protease ATP-binding subunitchromosome CDS520623 1290 + 0.274419
cyoE BU468 protohaeme IX farnesyltransferasechromosome CDS512987 858 - 0.237762
dnaJ BU152 DnaJ proteinchromosome CDS160960 1134 - 0.334215
dnaK BU153 DnaK proteinchromosome CDS162206 1914 - 0.318704
dsbA BU430 thiol:disulfide interchange protein DsbA precursorchromosome CDS468937 639 + 0.187793
fkpA BU533 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursorchromosome CDS566176 726 - 0.279614
flgA BU336 flagella basal-body P-ring formation protein FlgA precursorchromosome CDS369604 681 - 0.259912
flgJ BU345 flagellar protein FlgJchromosome CDS377099 300 + 0.23
groES BU018 co-chaperonin GroESchromosome CDS18376 291 + 0.353952
grpE BU184 heat shock protein GrpE2chromosome CDS200569 567 - 0.215168
grpE1 BU252 heat shock protein GrpE1chromosome CDS279317 585 + 0.198291
hflB BU382 cell division protein FtsHchromosome CDS422351 1836 - 0.338235
hflC BU567 HflC proteinchromosome CDS599175 933 - 0.290461
hflK BU568 HflK proteinchromosome CDS600110 1221 - 0.285012
hscA BU605 heat shock protein HscAchromosome CDS636239 1836 + 0.250545
hscB BU604 chaperone protein HscBchromosome CDS635703 525 + 0.165714
hslU BU579 ATP-dependent protease ATP-binding subunitchromosome CDS612698 1332 + 0.317568
hslV BU578 ATP-dependent protease peptidase subunitchromosome CDS612173 513 + 0.311891
htpG BU483 heat shock protein 90chromosome CDS533111 1875 + 0.251733
htpX BU321 heat shock protein HtpXchromosome CDS357310 879 + 0.311718
htrA BU228 protease Do precursorchromosome CDS252152 1437 + 0.298539
ibpA BU580 16 kDa heat shock protein Achromosome CDS614236 474 + 0.240506
lon BU477 ATP-dependent protease LAchromosome CDS522104 2334 + 0.297772
mopA BU019 60 kDa chaperoninchromosome CDS18715 1647 + 0.361263
ppiD BU478 peptidyl-prolyl cis-trans isomerase Dchromosome CDS524579 1872 + 0.191774
smpB BU254 SsrA-binding proteinchromosome CDS280373 489 + 0.229039
sohB BU283 possible protease SohBchromosome CDS308348 1011 + 0.254204
surA BU140 survival protein SurA precursorchromosome CDS146062 1293 + 0.21423
tig BU474 trigger factorchromosome CDS518435 1329 + 0.198646
trxA BU597 thioredoxinchromosome CDS627585 327 - 0.269113
trxB BU314 thioredoxin reductasechromosome CDS347821 960 + 0.307292
ydhD BU187 hypothetical proteinchromosome CDS203108 327 + 0.287462
yeaZ BU324 hypothetical proteinchromosome CDS360644 666 + 0.238739
yggX BU553 hypothetical proteinchromosome CDS588828 282 + 0.202128
ygjD BU058 O-sialoglycoprotein endopeptidasechromosome CDS63204 1011 + 0.283877
yhgI BU544 hypothetical proteinchromosome CDS579687 579 - 0.286701
yhhP BU447 hypothetical proteinchromosome CDS488223 231 + 0.225108
 
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ahpC bbp171 peroxiredoxin 2chromosome CDS196716 600 - 0.295
clpP bbp419 ATP-dependent Clp protease proteolytic subunitchromosome CDS489272 618 + 0.289644
clpX bbp420 ATP-dependent protease ATP-binding subunitchromosome CDS489973 1287 + 0.275835
cyoE bbp413 protoheme IX farnesyltransferasechromosome CDS483241 867 - 0.230681
dnaJ bbp141 chaperone protein DnaJchromosome CDS157317 1152 - 0.336806
dnaK bbp142 chaperone protein DnaKchromosome CDS158590 1917 - 0.298905
dsbA bbp381 thiol:disulfide interchange protein DsbA precursorchromosome CDS440143 636 + 0.210692
fkpA bbp476 FKBP-type peptidyl-prolyl cis-trans isomerase FkpAchromosome CDS535676 756 - 0.265873
flgJ bbp316 flagellar protein FlgJ homologchromosome CDS367077 453 + 0.229581
gcp bbp055 putative O-sialoglycoprotein endopeptidasechromosome CDS62606 1017 + 0.290069
groES bbp020 co-chaperonin GroESchromosome CDS19865 294 + 0.340136
grpE bbp173 GrpE protein 2chromosome CDS198306 585 - 0.225641
grpE1 bbp233 GrpE proteinchromosome CDS271815 597 + 0.221106
hflB bbp345 Cell division proteinchromosome CDS403520 1833 - 0.330606
hflC bbp512 HflCchromosome CDS572122 981 - 0.238532
hflK bbp513 HflKchromosome CDS573106 1254 - 0.248006
hscA bbp547 chaperone protein HscAchromosome CDS611933 1536 + 0.251302
hscB bbp546 chaperone protein HscBchromosome CDS611399 510 + 0.182353
hslU bbp524 ATP-dependent protease ATP-binding subunitchromosome CDS587237 1335 + 0.31161
hslV bbp523 ATP-dependent protease peptidase subunitchromosome CDS586694 531 + 0.312618
htpG bbp427 heat shock protein 90chromosome CDS501507 1881 + 0.263158
htpX bbp299 heat shock protein HtpXchromosome CDS350972 876 + 0.292237
htrA bbp210 serine proteasechromosome CDS245995 1398 + 0.294707
lon bbp421 ATP-dependent protease Lachromosome CDS491446 2343 + 0.306872
mopA bbp021 chaperonin GroEL proteinchromosome CDS20209 1653 + 0.355717
ppiD bbp422 peptidyl-prolyl cis-trans isomerase Dchromosome CDS493897 1536 + 0.180339
sirA bbp397 SirA proteinchromosome CDS460933 240 + 0.2625
smpB bbp235 SsrA-binding proteinchromosome CDS272836 477 + 0.238994
sohB bbp263 putative protease SohBchromosome CDS301540 1050 + 0.24
trxA bbp539 thioredoxinchromosome CDS603044 330 - 0.245455
trxB bbp291 thioredoxin reductasechromosome CDS341206 981 + 0.307849
ydhD bbp176 thioredoxin-like protein 2chromosome CDS200435 327 + 0.29052
yeaZ bbp301 putative protease precursorchromosome CDS354198 666 + 0.250751
yggX bbp501 hypothetical proteinchromosome CDS563710 264 + 0.208333
yhgI bbp486 YhgIchromosome CDS547566 576 - 0.288194
 
Buchnera aphidicola str. Cc (Cinara cedri), Cc
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ahpC BCc_117 AhpCchromosome CDS135380 603 - 0.243781
clpP BCc_293 ClpPchromosome CDS331724 603 + 0.232172
clpX BCc_294 ClpXchromosome CDS332379 1263 + 0.21536
dnaJ BCc_095 DnaJchromosome CDS107518 1167 - 0.260497
dnaK BCc_096 DnaKchromosome CDS108818 1917 - 0.27856
gcp BCc_037 Gcpchromosome CDS41712 1032 + 0.231589
groES BCc_010 GroESchromosome CDS10754 294 + 0.292517
grpE1 BCc_158 GrpE1chromosome CDS186323 591 + 0.1489
hflB BCc_235 ATP-dependent proteasechromosome CDS271722 1803 - 0.266223
hscA BCc_394 HscAchromosome CDS412428 1500 + 0.190667
hslV BCc_376 HslVchromosome CDS395540 537 + 0.314711
htpG BCc_302 HtpGchromosome CDS343540 1875 + 0.208
htpX BCc_200 HtpXchromosome CDS235925 891 + 0.196409
lon BCc_295 DNA-binding ATP-dependent protease Lachromosome CDS333749 2349 + 0.241379
smpB BCc_159 SmpBchromosome CDS186979 471 + 0.193206
sppA BCc_171 SppAchromosome CDS199051 1866 - 0.187031
trxA BCc_386 TrxAchromosome CDS403700 336 - 0.1875
trxB BCc_194 TrxBchromosome CDS228397 990 + 0.226263
ydhD BCc_121 YdhDchromosome CDS138114 312 + 0.246795
yeaZ BCc_202 YeaZchromosome CDS238727 675 + 0.192593
yggX BCc_363 YggXchromosome CDS387302 249 + 0.168675
yhgI BCc_355 GNT I transport systemmembrane-bound proteinchromosome CDS379163 582 - 0.235395
yhhP BCc_276 YhhPchromosome CDS311350 237 + 0.151899
 
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ahpC BUsg176 alkyl hydroperoxide reductase subunit Cchromosome CDS199918 597 - 0.286432
bcp BUsg089 bacterioferritin comigratory proteinchromosome CDS101886 477 + 0.243187
clpP BUsg459 ATP-dependent Clp protease proteolytic subunitchromosome CDS521153 594 + 0.291246
clpX BUsg460 ATP-dependent protease ATP-binding subunitchromosome CDS521832 1284 + 0.278816
cyoE BUsg452 protoheme IX farnesyltransferasechromosome CDS514111 855 - 0.218713
dnaJ BUsg145 DnaJ proteinchromosome CDS161635 1137 - 0.328936
dnaK BUsg146 DnaK proteinchromosome CDS162874 1917 - 0.324465
dsbA BUsg415 thiol:disulfide interchange protein DsbA precursorchromosome CDS470145 630 + 0.177778
fkpA BUsg514 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursorchromosome CDS566949 759 - 0.230567
flgA BUsg324 flagella basal body P-ring formation proteinchromosome CDS371025 669 - 0.255605
flgJ BUsg333 flagellar protein flgJchromosome CDS378408 321 + 0.211838
fliJ BUsg071 flagellar FliJ proteinchromosome CDS82270 459 + 0.163399
ftsH BUsg369 cell division protein FtsHchromosome CDS422825 1842 - 0.340391
gcp BUsg055 probable O-sialoglycoprotein endopeptidasechromosome CDS63281 1014 + 0.290927
groES BUsg018 co-chaperonin GroESchromosome CDS18275 291 + 0.343643
grpE BUsg178 GrpEchromosome CDS201376 567 - 0.194004
grpE1 BUsg243 GrpEchromosome CDS280779 609 + 0.197044
hflC BUsg547 HflC proteinchromosome CDS600138 924 - 0.284632
hflK BUsg548 HflK proteinchromosome CDS601067 1236 - 0.282362
hscA BUsg580 chaperone protein HscAchromosome CDS636876 1830 + 0.245355
hscB BUsg579 chaperone protein HscBchromosome CDS636348 498 + 0.156627
hslU BUsg558 ATP-dependent protease ATP-binding subunitchromosome CDS613489 1332 + 0.304805
hslV BUsg557 ATP-dependent protease peptidase subunitchromosome CDS612947 531 + 0.318267
htpG BUsg468 heat shock protein 90chromosome CDS533996 1878 + 0.250266
htpX BUsg313 heat shock protein HtpXchromosome CDS358928 879 + 0.304892
htrA BUsg222 periplasmic serine proteasechromosome CDS252941 1437 + 0.306193
ibp BUsg559 heat inducible protein Ibpchromosome CDS615016 501 + 0.213573
lon BUsg461 ATP-dependent protease LAchromosome CDS523305 2334 + 0.296915
mopA BUsg019 60 kDa chaperoninchromosome CDS18623 1647 + 0.359441
ppiD BUsg462 peptidyl-prolyl cis-trans isomerase Dchromosome CDS525741 1866 + 0.189711
smpB BUsg245 SsrA-binding proteinchromosome CDS281802 492 + 0.227642
sohB BUsg272 putative protease SohBchromosome CDS308452 1029 + 0.229349
surA BUsg133 survival protein SurA precursorchromosome CDS146862 1299 + 0.179369
tig BUsg458 trigger factorchromosome CDS519698 1329 + 0.191121
trxA BUsg573 thioredoxinchromosome CDS628212 327 - 0.256881
trxB BUsg304 thioredoxin reductasechromosome CDS348469 960 + 0.263542
ydhD BUsg181 hypothetical 12.9 kDa proteinchromosome CDS203859 324 + 0.280864
yeaZ BUsg315 hypothetical 25.2 kDa proteinchromosome CDS362213 633 + 0.265403
ygcF BUsg401 hypothetical 25.0 kDa proteinchromosome CDS454946 660 + 0.228788
yggX BUsg535 hypothetical proteinchromosome CDS589915 237 + 0.21097
yhgI BUsg525 hypothetical 21.0 kDa proteinchromosome CDS580302 579 - 0.26943
yhhP BUsg432 hypothetical proteinchromosome CDS489502 261 + 0.241379
 
Candidatus Blochmannia floridanus
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ahpC Bfl228 alkyl hydroperoxide reductase C22 proteinchromosome CDS242033 600 - 0.31
bcp Bfl519 bacterioferritin comigratory proteinchromosome CDS578340 480 + 0.260417
clpB Bfl182 ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpEchromosome CDS214168 2619 + 0.303551
clpP Bfl246 ATP-dependent Clp protease proteolytic subunitchromosome CDS262722 630 + 0.309524
clpX Bfl247 ATP-dependent protease ATP-binding subunitchromosome CDS263539 1281 + 0.285714
cyoE Bfl241 protohaeme IX farnesyltransferase (haeme O biosynthesis)chromosome CDS257182 882 - 0.255102
cysU Bfl513 sulphate transport system permease protein CysUchromosome CDS569628 837 - 0.321386
degQ Bfl047 serine proteasechromosome CDS52798 1386 - 0.336219
dnaJ Bfl115 DnaJ proteinchromosome CDS129526 1134 + 0.365961
dnaK Bfl114 DnaK protein (heat shock protein 70)chromosome CDS127463 1932 + 0.337992
dsbB Bfl438 disulfide bond formation protein Bchromosome CDS481718 525 + 0.268571
ftsH Bfl098 cell division protein FtsHchromosome CDS105868 1935 + 0.338501
gcp Bfl059 possible glycoproteasechromosome CDS64010 1062 + 0.347458
groES Bfl070 co-chaperonin GroESchromosome CDS74437 294 + 0.370748
grpE Bfl544 heat shock protein GrpEchromosome CDS607494 588 - 0.284014
grxC Bfl605 glutaredoxin 3chromosome CDS673675 267 - 0.269663
hflC Bfl082 HflC proteinchromosome CDS88740 1026 + 0.311891
hflK Bfl081 HflK proteinchromosome CDS87413 1323 + 0.309146
ibpA Bfl018 heat shock protein Achromosome CDS18765 411 + 0.284672
lon Bfl299 Lon proteasechromosome CDS328887 2337 + 0.326059
mopA Bfl071 GroEL proteinchromosome CDS74787 1644 + 0.386861
smpB Bfl548 SsrA-binding proteinchromosome CDS610196 447 + 0.284116
sppA Bfl436 protease IV, a signal peptide peptidasechromosome CDS478172 1878 + 0.283813
sufB Bfl359 putative ABC transporter sufBchromosome CDS396424 1503 + 0.290087
sufC Bfl360 probable ATP-dependent transporter sufCchromosome CDS397993 738 + 0.280488
sufD Bfl361 required for stability of iron-sulfur component of FhuFchromosome CDS398714 1302 + 0.240399
surA Bfl128 survival protein SurA precursorchromosome CDS145371 1281 - 0.24356
trxA Bfl587 thioredoxin 1, redox factorchromosome CDS655058 342 - 0.236842
trxB Bfl387 thioredoxin reductasechromosome CDS427554 972 + 0.338477
ureD Bfl526 putative urease accessory protein Dchromosome CDS584385 861 - 0.295006
ureF Bfl522 putative urease accessory protein Fchromosome CDS581031 684 - 0.30848
ureG Bfl521 putative urease accessory protein Gchromosome CDS580309 630 - 0.320635
ydhD Bfl367 hypothetical proteinchromosome CDS403359 336 + 0.285714
yeaZ Bfl442 hypothetical proteinchromosome CDS484301 663 - 0.33635
yggX Bfl248 hypothetical proteinchromosome CDS264937 240 - 0.208333
yhgI Bfl573 hypothetical proteinchromosome CDS643461 618 + 0.278317
 
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ahpC BPEN_235 alkyl hydroperoxide reductase C22 proteinchromosome CDS264460 603 - 0.344942
bcp BPEN_537 bacterioferritin comigratory proteinchromosome CDS642934 486 + 0.3107
clpB BPEN_188 ATP-dependent proteasechromosome CDS235325 2577 + 0.33605
clpP BPEN_253 ATP-dependent Clp protease proteolytic subunitchromosome CDS287418 627 + 0.333333
clpX BPEN_254 ATP-dependent Clp protease ATP-binding subunitchromosome CDS288183 1260 + 0.309524
cyoE BPEN_248 protohaeme IX farnesyltransferasechromosome CDS280494 885 - 0.280226
cysU BPEN_530 thiosulfate transport protein (ABC superfamily, membrane)chromosome CDS633721 834 - 0.348921
degQ BPEN_048 serine proteasechromosome CDS58826 1374 - 0.350801
dnaJ BPEN_119 DnaJchromosome CDS143420 1128 + 0.373227
dnaK BPEN_118 DnaKchromosome CDS141383 1914 + 0.354754
dsbA BPEN_646 periplasmic protein disulfide isomerase I, disulfide bond formationchromosome CDS772648 630 - 0.271429
dsbB BPEN_452 disulfide bond formation protein Bchromosome CDS538357 525 + 0.306667
gcp BPEN_060 putative O-sialoglycoprotein endopeptidasechromosome CDS72239 1026 + 0.368421
gntY BPEN_593 membrane-bound protein in GNT I transport systemchromosome CDS713530 591 + 0.343486
groEL BPEN_073 GroELchromosome CDS85742 1638 + 0.393773
groES BPEN_072 co-chaperonin GroESchromosome CDS85399 294 + 0.404762
grpE BPEN_564 heat shock protein 24chromosome CDS674875 588 - 0.278912
grxC BPEN_628 glutaredoxin 3chromosome CDS750742 276 - 0.311594
hflB BPEN_101 FtsHchromosome CDS118442 1929 + 0.378953
hflC BPEN_085 HflCchromosome CDS100556 1029 + 0.336249
htpX BPEN_463 heat shock proteinchromosome CDS550270 936 - 0.308761
ibpA BPEN_017 heat shock protein Achromosome CDS19201 411 + 0.270073
lon BPEN_307 DNA-binding ATP-dependent protease Lachromosome CDS359892 2364 + 0.346447
smpB BPEN_568 SsrA-binding proteinchromosome CDS677490 465 + 0.227957
sppA BPEN_450 protease IVchromosome CDS534585 1878 + 0.29819
sufB BPEN_370 putative transport protein associated with Fe-S cluster assemblychromosome CDS437771 1497 + 0.317301
sufC BPEN_371 putative transport protein associated with Fe-S cluster assembly (ABC superfamily, atp_bind)chromosome CDS439324 741 + 0.310391
sufD BPEN_372 SufDchromosome CDS440045 1290 + 0.291473
surA BPEN_132 peptidyl-prolyl cis-trans isomerasechromosome CDS159993 1278 - 0.246479
trxA BPEN_608 thioredoxin 1, redox factorchromosome CDS728530 327 - 0.287462
trxB BPEN_398 thioredoxin reductasechromosome CDS471064 957 + 0.338558
ureD BPEN_545 putative urease accessory protein Dchromosome CDS649631 837 - 0.330944
ureF BPEN_541 putative urease accessory protein Fchromosome CDS646116 687 - 0.378457
ureG BPEN_540 putative urease accessory protein Gchromosome CDS645412 624 - 0.333333
ydhD BPEN_378 conserved protein with thioredoxin-like domainchromosome CDS444788 333 + 0.315315
yeaZ BPEN_456 putative glycoprotein endopeptidase, actin-like ATPase domainchromosome CDS541729 720 - 0.3625
yggX BPEN_255 hypothetical proteinchromosome CDS289623 255 - 0.254902
 
Enterobacteria phage Fels-2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STM2605 head-tail preconnector-like proteinchromosome CDS2752336 1497 - 0.565798
NA STM1790 putative chaperonechromosome CDS1889069 405 + 0.575309
NA STM0335 putative outer membrane proteinchromosome CDS378536 399 + 0.35589
NA STM1251 putative molecular chaperonechromosome CDS1335516 468 + 0.455128
NA STM1864 putative inner membrane proteinchromosome CDS1960722 615 + 0.43252
NA STM0912 ATP-dependent proteasechromosome CDS983263 2187 + 0.576589
NA STM2762 putative inner membrane proteinchromosome CDS2903614 1284 - 0.309969
NA STM0903 putative chaparonechromosome CDS973404 816 + 0.546569
NA STM1033 Clp protease-like proteinchromosome CDS1120666 2082 + 0.524976
NA STM0402 putative thiol-alkyl hydroperoxide reductasechromosome CDS458073 603 - 0.532338
NA STM2176 putative glutathione S-transferasechromosome CDS2272979 645 - 0.562791
NA STM4309 hypothetical proteinchromosome CDS4556468 1401 - 0.533191
NA STM1667 putative thiol peroxidasechromosome CDS1759693 558 - 0.444444
NA STM0567 putative DNA repair ATPasechromosome CDS622698 1176 - 0.537415
NA STM1022 putative molecular chaperonechromosome CDS1111509 798 + 0.463659
NA STM1534 putative hydrogenasechromosome CDS1609982 411 - 0.530414
NA STM4067 putative ADP-ribosylglycohydrolasechromosome CDS4277918 1041 + 0.570605
NA STM4267 putative glutathione S-transferasechromosome CDS4505131 669 + 0.547085
NA STM0272 putative chaperone ATPasechromosome CDS311194 2640 + 0.595455
NA STM3193 putative disulfide bond formation proteinchromosome CDS3356317 672 + 0.46131
NA STM3194 putative disulfide oxidoreductasechromosome CDS3357003 678 + 0.510324
NA STM4491 putative ATP-dependent Lon proteasechromosome CDS4736677 2085 - 0.508873
NA STM3752 putative cytoplasmic proteinchromosome CDS3948987 345 - 0.394203
aat STM0955 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1030877 705 - 0.567376
ahpC STM0608 alkyl hydroperoxide reductase C22 subunitchromosome CDS670449 564 + 0.508865
ahpF STM0609 alkyl hydroperoxide reductase F52a subunitchromosome CDS671254 1566 + 0.54917
b2145 STM2185 putative inner membrane proteinchromosome CDS2280943 246 + 0.406504
bcfH STM0028 putative thiol-disulfide isomerasechromosome CDS31274 846 + 0.549645
bcp STM2491 bacterioferritin comigratory proteinchromosome CDS2605639 471 + 0.481953
btuE STM1341 vitamin B12 transport proteinchromosome CDS1420643 552 + 0.494565
cbpA STM1112 DNA-binding proteinchromosome CDS1198999 921 - 0.534202
ccmA STM3819 heme exporter proteinchromosome CDS4017973 618 - 0.726537
ccmA STM2254 heme exporter proteinchromosome CDS2353045 618 - 0.726537
ccmB STM2253 heme exporter proteinchromosome CDS2352389 660 - 0.701515
ccmB STM3818 heme exporter proteinchromosome CDS4017317 660 - 0.701515
ccmC STM2252 heme exporter proteinchromosome CDS2351600 738 - 0.654472
ccmC STM3817 heme exporter proteinchromosome CDS4016528 738 - 0.654472
ccmE STM3815 periplasmic heme-dependent peroxidasechromosome CDS4015843 480 - 0.654167
ccmE STM2250 periplasmic heme-dependent peroxidasechromosome CDS2350915 480 - 0.654167
ccmF STM2249 cytochrome c-type biogenesis proteinchromosome CDS2348987 1932 - 0.681677
ccmF STM3814 cytochrome c-type biogenesis proteinchromosome CDS4013915 1932 - 0.681677
ccmG STM2248 heme lyase/disulfide oxidoreductasechromosome CDS2348433 558 - 0.621864
ccmG STM3813 heme lyase disulfide oxidoreductasechromosome CDS4013361 558 - 0.621864
ccmH STM3812 putative heme lyase subunitchromosome CDS4012321 1044 - 0.678161
ccmH STM2247 putative heme lyase subunitchromosome CDS2347393 1044 - 0.662835
clpA STM0945 ATP-binding subunit of serine proteasechromosome CDS1022698 2277 + 0.541941
clpB STM2660 ATP-dependent proteasechromosome CDS2802116 2574 - 0.533023
clpP STM0448 ATP-dependent Clp protease proteolytic subunitchromosome CDS503210 624 + 0.512821
clpX STM0449 ATP-dependent protease ATP-binding subunitchromosome CDS504085 1272 + 0.528302
csgB STM1143 minor curlin subunit precursorchromosome CDS1231133 456 + 0.434211
cydC STM0956 cytochrome-related transporterchromosome CDS1031626 1722 - 0.570267
cydD STM0957 cytochrome-related transporterchromosome CDS1033348 1767 - 0.565931
cyoE STM0439 protoheme IX farnesyltransferasechromosome CDS493354 891 - 0.537598
cypD STM0452 peptidyl-prolyl isomerasechromosome CDS508668 1872 + 0.524038
cysU STM2443 thiosulfate transport proteinchromosome CDS2554592 834 - 0.558753
degQ STM3348 serine endoproteasechromosome CDS3515417 1368 + 0.540936
degS STM3349 periplasmic serine endoproteasechromosome CDS3516877 1071 + 0.544351
djlA STM0094 Dna-J like membrane chaperone proteinchromosome CDS108424 813 + 0.541205
dnaJ STM0013 heat shock proteinchromosome CDS13595 1140 + 0.540351
dnaK STM0012 molecular chaperone DnaKchromosome CDS11593 1917 + 0.525822
dsbA STM3997 periplasmic protein disulfide isomerase Ichromosome CDS4204199 624 + 0.503205
dsbB STM1807 disulfide bond formation protein Bchromosome CDS1908514 531 + 0.548023
dsbC STM3043 protein disulfide isomerase IIchromosome CDS3203688 714 - 0.502801
dsbD STM4323 thiol:disulfide interchange protein precursorchromosome CDS4567382 1704 - 0.565728
dsbG STM0607 periplasmic disulfide isomerase/thiol-disulphide oxidasechromosome CDS669262 747 - 0.507363
fdhE STM4034 formate dehydrogenase accessory protein FdhEchromosome CDS4242285 930 - 0.583871
fklB STM4397 FKBP-type 22KD peptidyl-prolyl cis-trans isomerasechromosome CDS4633890 663 + 0.561086
fkpA STM3453 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3604871 819 - 0.509158
flgA STM1173 flagellar basal body P-ring biosynthesis proteinchromosome CDS1257431 660 - 0.580303
flgJ STM1182 flagellar biosynthesis proteinchromosome CDS1264453 951 + 0.562566
flgN STM1171 putative FlgK/FlgL export chaperonechromosome CDS1256619 423 - 0.536643
fliJ STM1973 flagellar proteinchromosome CDS2061301 444 + 0.513514
fliS STM1961 flagellar protein FliSchromosome CDS2050820 408 + 0.5
gcp STM3208 putative O-sialoglycoprotein endopeptidasechromosome CDS3372814 1014 - 0.581854
glnD STM0214 PII uridylyl-transferasechromosome CDS250143 2673 - 0.561167
glnE STM3201 adenylyl transferase for glutamine synthetasechromosome CDS3364040 2844 - 0.571027
groEL STM4330 chaperonin GroELchromosome CDS4575111 1647 + 0.544019
groES STM4329 co-chaperonin GroESchromosome CDS4574774 294 + 0.469388
grpE STM2681 heat shock proteinchromosome CDS2821587 591 - 0.531303
grxA STM0872 glutaredoxin 1chromosome CDS945074 264 - 0.431818
grxB STM1165 glutaredoxin 2chromosome CDS1250351 648 - 0.464506
grxC STM3702 glutaredoxin 3chromosome CDS3896547 252 - 0.511905
gst STM1451 glutathionine S-transferasechromosome CDS1525740 606 - 0.516502
hflB STM3296 ATP-dependent zinc-metallo proteasechromosome CDS3464690 1935 - 0.557623
hflC STM4364 FtsH modulatorchromosome CDS4607713 1005 + 0.542289
hflK STM4363 FtsH modulatorchromosome CDS4606451 1260 + 0.566667
hopD STM3442 leader peptidase HopDchromosome CDS3596910 468 + 0.529915
hscA STM2539 chaperone protein HscAchromosome CDS2678197 1851 - 0.594273
hscB STM2540 co-chaperone HscBchromosome CDS2680060 516 - 0.544574
hscC STM0659 putative heatshock proteinchromosome CDS722533 1680 - 0.525595
hslJ STM1648 heat shock protein hslJchromosome CDS1741129 411 + 0.523114
hslO STM3498 Hsp33-like chaperoninchromosome CDS3653483 885 + 0.540113
hslU STM4091 ATP-dependent protease ATP-binding subunitchromosome CDS4299150 1332 - 0.530781
hslV STM4092 ATP-dependent protease peptidase subunitchromosome CDS4300491 531 - 0.544256
htpG STM0487.S heat shock protein 90chromosome CDS543926 1875 + 0.529067
htpX STM1844 heat shock protein HtpXchromosome CDS1940059 882 - 0.529478
htrA STM0209 high temperature requirement A protein precursorchromosome CDS244492 1428 + 0.54902
hybG STM3143 chaperone-like proteinchromosome CDS3307202 249 - 0.526104
hypB STM2855 hydrogenase-3 accessory proteinchromosome CDS3000223 873 + 0.573883
hypC STM2856 putative hydrogenase formation proteinchromosome CDS3001086 273 + 0.556777
hypD STM2857 putative hydrogenase formation proteinchromosome CDS3001358 1119 + 0.579982
hypE STM2858 putative hydrogenase formation proteinchromosome CDS3002473 1011 + 0.593472
hypF STM2842 hydrogenase maturation proteinchromosome CDS2987737 2241 - 0.604195
ibpA STM3809.S small heat shock proteinchromosome CDS4009916 420 - 0.495238
ibpB STM3808.S small heat shock proteinchromosome CDS4009378 435 - 0.512644
lon STM0450 ATP-dependent protease Lonchromosome CDS505542 2355 + 0.540127
lonH STM1068 putative proteasechromosome CDS1158495 1761 - 0.534355
lpxO STM4286 putative dioxygenasechromosome CDS4527852 909 - 0.504951
malM STM4232 periplasmic protein precursorchromosome CDS4453601 918 + 0.555556
msrA STM4408 methionine sulfoxide reductase Achromosome CDS4645202 639 - 0.543036
nrdG STM4451 anaerobic ribonucleotide reductase activating proteinchromosome CDS4691968 465 - 0.565591
nrdH STM2805 glutaredoxin-like proteinchromosome CDS2951857 246 + 0.552846
nrfE STM4281 formate-dependent nitrite reductasechromosome CDS4519832 2223 + 0.588394
nrfG STM4282 formate-dependent nitrite reductase componentchromosome CDS4522051 621 + 0.573269
osmC STM1563 putative envelope proteinchromosome CDS1644237 432 - 0.516204
pcm STM2926 protein-L-isoaspartate O-methyltransferasechromosome CDS3067858 627 - 0.566188
pflA STM0970 pyruvate formate lyase-activating enzyme 1chromosome CDS1052688 825 - 0.481212
pflC STM4115 putative pyruvate formate lyase activating enzyme 2chromosome CDS4331077 879 + 0.549488
pflE STM0844 putative pyruvate formate lyase activating enzymechromosome CDS913785 900 - 0.555556
phnU STM0427 2-aminoethylphosphonate transporterchromosome CDS480160 861 - 0.57259
ppiA STM3472 peptidyl-prolyl cis-trans isomerase Achromosome CDS3621222 573 - 0.507853
ppiB STM0536 peptidyl-prolyl cis-trans isomerase Bchromosome CDS598468 495 - 0.49697
ppiC STM3910 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4118944 282 - 0.460993
prgI STM2873 needle complex major subunitchromosome CDS3016075 243 - 0.460905
ptr STM2995 protease IIIchromosome CDS3149646 2889 - 0.520941
radA STM4579 putative ATP-dependent proteasechromosome CDS4834276 1383 + 0.596529
rpsV STM1565 30S ribosomal subunit protein S22chromosome CDS1645491 144 + 0.506944
scsB STM1114 suppression of copper sensitivity proteinchromosome CDS1200565 1887 + 0.580816
scsC STM1115 suppression of copper sensitivity proteinchromosome CDS1202448 624 + 0.522436
scsD STM1116 suppression of copper sensitivity proteinchromosome CDS1203061 507 + 0.619329
slpA STM0048 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS57344 450 + 0.546667
slyD STM3455 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3606315 591 - 0.558376
smpB STM2688 SsrA-binding proteinchromosome CDS2826484 483 + 0.494824
sohB STM1716 putative peptidasechromosome CDS1813085 1047 - 0.540592
sppA STM1295 protease IVchromosome CDS1372910 1857 - 0.557889
sspA STM3342 stringent starvation protein Achromosome CDS3510553 639 - 0.516432
sufB STM1370 putative ABC transporter proteinchromosome CDS1452692 1488 + 0.52621
sufC STM1371 putative transport proteinchromosome CDS1454196 747 + 0.526104
sufD STM1372 cysteine desulfurase modulatorchromosome CDS1454917 1272 + 0.537736
surA STM0092 peptidyl-prolyl cis-trans isomerasechromosome CDS104470 1287 - 0.543901
tig STM0447 trigger factorchromosome CDS501665 1299 + 0.524249
tpx STM1682 thiol peroxidasechromosome CDS1775584 507 + 0.500986
trxA STM3915 thioredoxinchromosome CDS4124836 330 + 0.493939
trxB STM0958 thioredoxin reductasechromosome CDS1035228 969 - 0.550052
trxC STM2649 thioredoxin 2chromosome CDS2788654 420 + 0.535714
ybbJ STM0500 hypothetical proteinchromosome CDS560973 453 - 0.607064
ybbK STM0501 putative inner membrane proteinchromosome CDS561422 918 - 0.546841
ybbN STM0504 putative thioredoxin proteinchromosome CDS564015 855 - 0.555556
ybeL STM0653 putative cytoplasmic proteinchromosome CDS716566 474 + 0.556962
ybeS STM0656 putative molecular chaperonechromosome CDS718902 1434 + 0.548814
ybeV STM0658 putative molecular chaperonechromosome CDS721039 1473 + 0.541073
ycaL STM0979 putative Zn-dependent proteasechromosome CDS1064060 762 + 0.510499
ydcP STM1604 putative collagenasechromosome CDS1693636 1965 - 0.5257
ydhD STM1433 putative glutaredoxin proteinchromosome CDS1511277 348 + 0.5
ydhH STM1446 putative cytoplasmic proteinchromosome CDS1521107 1122 + 0.57754
yeaA STM1291 methionine sulfoxide reductase Bchromosome CDS1370000 444 + 0.511261
yeaZ STM1820 putative molecular chaperonechromosome CDS1917765 696 - 0.602012
yedF STM1966 putative transcriptional regulatorchromosome CDS2055004 234 + 0.491453
yegD STM2125 putative heat shock proteinchromosome CDS2212491 1353 + 0.597191
yegQ STM2136 putative proteasechromosome CDS2229684 1362 + 0.544787
yegU STM2143 putative glycohydrolasechromosome CDS2237539 1005 + 0.585075
yfcF STM2348 putative glutathione S-transferasechromosome CDS2459626 645 - 0.562791
yfcG STM2349 putative glutathione S-transferasechromosome CDS2460413 648 + 0.532407
ygcF STM2951 hypothetical proteinchromosome CDS3096557 672 - 0.508929
yggG STM3077 putative Zn-dependent proteasechromosome CDS3238660 759 + 0.549407
yggX STM3111 hypothetical proteinchromosome CDS3269765 276 + 0.474638
yghU STM3140 putative glutathione S-transferasechromosome CDS3304430 867 + 0.545559
yhbU STM3274 putative proteasechromosome CDS3440273 996 + 0.590361
yhbV STM3275.S putative proteasechromosome CDS3441277 879 + 0.564278
yhfA STM3465 putative inner membrane proteinchromosome CDS3614933 405 - 0.538272
yhgI STM3511 putative thioredoxin-like proteinchromosome CDS3669438 576 + 0.538194
yhhP STM3578 hypothetical proteinchromosome CDS3746509 246 - 0.536585
yibF STM3684 putative glutathione S-transferasechromosome CDS3874183 609 - 0.550082
yifB STM3899 putative magnesium chelatase subunit ChlIchromosome CDS4106863 1521 - 0.52597
yjjW STM4565 pyruvate formate lyase-activating enzymechromosome CDS4818786 864 - 0.559028
yliJ STM0862 putative glutathione S-transferasechromosome CDS934627 627 - 0.54386
yqjG STM3233 putative glutathione S-transferasechromosome CDS3398498 987 + 0.52381
 
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA2975 hypothetical proteinchromosome CDS3325954 651 - 0.447005
NA ECA3044 putative glutathione-S transferasechromosome CDS3401812 627 + 0.5311
NA ECA0721 hypothetical proteinchromosome CDS790573 879 - 0.536974
NA ECA3769 putative pyruvate formate-lyase activating enzymechromosome CDS4211839 951 + 0.498423
NA ECA1072 glutathione S-transferasechromosome CDS1201077 630 - 0.438095
NA ECA2690 putative glutathione S-transferasechromosome CDS3025403 618 + 0.535599
NA ECA1195 hypothetical proteinchromosome CDS1356757 456 - 0.572368
NA ECA2374 hypothetical proteinchromosome CDS2684682 702 - 0.574074
NA ECA1267 thioredoxinchromosome CDS1440451 1266 - 0.548183
NA ECA1587 probable glutathione-S-transferasechromosome CDS1840982 693 + 0.536797
NA ECA0554 hypothetical proteinchromosome CDS622423 876 + 0.477169
NA ECA2649 thioredoxin reductasechromosome CDS2982496 960 + 0.519792
NA ECA4063 hypothetical proteinchromosome CDS4528356 408 - 0.509804
NA ECA1450 putative proteasechromosome CDS1645215 1620 + 0.543827
NA ECA1196 hypothetical proteinchromosome CDS1357212 915 - 0.525683
NA ECA1749 hypothetical proteinchromosome CDS1998033 1728 - 0.518519
NA ECA3850 hypothetical proteinchromosome CDS4304195 771 - 0.555123
NA ECA3656 hypothetical proteinchromosome CDS4105353 657 + 0.578387
NA ECA1117 probable peroxidasechromosome CDS1269999 603 - 0.524046
NA ECA4230 probable magnesium-chelatasechromosome CDS4733613 1527 + 0.525868
NA ECA3915 putative peptidasechromosome CDS4383748 753 + 0.512616
NA ECA0722 putative proteasechromosome CDS791463 996 - 0.560241
NA ECA3193 putative proteasechromosome CDS3573115 1365 + 0.542857
NA ECA1933 hypothetical proteinchromosome CDS2190305 1113 + 0.580413
NA ECA3377 glutaredoxinchromosome CDS3794082 636 + 0.506289
NA ECA0376 hypothetical proteinchromosome CDS427331 738 - 0.533875
NA ECA0635 hypothetical proteinchromosome CDS707778 996 - 0.518072
NA ECA0762 putative lipoproteinchromosome CDS834358 324 - 0.515432
NA ECA1220 putative thioredoxinchromosome CDS1389664 861 - 0.547038
NA ECA0388 putative peptidasechromosome CDS438255 1038 + 0.529865
NA ECA2716 putative glutathione S transferasechromosome CDS3052224 645 + 0.497674
NA ECA3192 hypothetical proteinchromosome CDS3571960 960 + 0.528125
NA ECA2312 hypothetical proteinchromosome CDS2617692 1143 + 0.503062
NA ECA1555 hypothetical proteinchromosome CDS1810590 1794 - 0.571349
NA ECA3436 putative chaperonechromosome CDS3852301 2598 - 0.561586
NA ECA2926 putative glutathione-S-transferase (partial)chromosome CDS3269020 126 + 0.507937
NA ECA2135 periplasmic pectate lyasechromosome CDS2434874 1707 - 0.521968
NA ECA0832 putative phage capsid protein (partial)chromosome CDS922240 327 + 0.495413
NA ECA4134 hypothetical proteinchromosome CDS4614245 576 + 0.526042
NA ECA1927 hypothetical proteinchromosome CDS2186467 351 + 0.478632
NA ECA2626 putative phage-related proteinchromosome CDS2958118 327 - 0.461774
NA ECA2791 putative glutathione S-transferasechromosome CDS3132533 687 + 0.544396
NA ECA0975 hypothetical proteinchromosome CDS1085686 273 - 0.483516
NA ECA1516 putative lipoproteinchromosome CDS1764218 498 + 0.556225
NA ECA2037 OsmC-like proteinchromosome CDS2318802 477 + 0.545073
NA ECA1570 putative glutathione S-transferasechromosome CDS1826507 840 - 0.567857
NA ECA0787 hypothetical proteinchromosome CDS861360 552 + 0.539855
NA ECA3554 hypothetical proteinchromosome CDS3985365 672 - 0.563988
NA ECA1820 hypothetical proteinchromosome CDS2065357 1371 - 0.54267
NA ECA4212 thioredoxinchromosome CDS4709153 327 - 0.470948
aat ECA2652 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS2987214 714 + 0.509804
ahpC ECA3942 alkyl hydroperoxide reductase C22 proteinchromosome CDS4413135 564 - 0.496454
ahpF ECA3941 alkyl hydroperoxide reductase subunit Fchromosome CDS4411424 1581 - 0.515496
bcp ECA1260 bacterioferritin comigratory proteinchromosome CDS1433409 468 - 0.444444
btuE ECA1833 putative vitamin B12 transport periplasmic proteinchromosome CDS2079241 552 + 0.494565
ccmA ECA1882 heme exporter protein Achromosome CDS2138606 621 + 0.587762
ccmB ECA1883 heme exporter protein Bchromosome CDS2139226 657 + 0.598173
ccmC ECA1884 heme exporter protein Cchromosome CDS2139951 741 + 0.556005
ccmE ECA1886 cytochrome C-type biogenesis proteinchromosome CDS2140906 483 + 0.561077
ccmF ECA1887 cytochrome C-type biogenesis proteinchromosome CDS2141385 1956 + 0.576687
ccmH1 ECA1889 cytochrome C-type biogenesis proteinchromosome CDS2143891 459 + 0.511983
ccmH2 ECA1890 cytochrome C-type biogenesis proteinchromosome CDS2144346 870 + 0.550575
clpA ECA2656 ATP-dependent CLP protease ATP-binding subunitchromosome CDS2990582 2274 - 0.529464
clpB ECA3345 ClpB protein (heat shock protein f84.1)chromosome CDS3760023 2577 - 0.496314
clpP ECA1148 ATP-dependent Clp protease proteolytic subunitchromosome CDS1301367 624 + 0.472756
clpX ECA1149 ATP-dependent protease ATP-binding subunitchromosome CDS1302154 1275 + 0.509804
cydC ECA2651 ABC transporter ATP-binding proteinchromosome CDS2985450 1740 + 0.547126
cydD ECA2650 ABC transporter ATP-binding proteinchromosome CDS2983684 1767 + 0.539898
cyoE ECA1139 protoheme IX farnesyltransferasechromosome CDS1291267 891 - 0.499439
cysT ECA0884 sulphate transport system permease proteinchromosome CDS985221 855 + 0.547368
cysU ECA3298 sulfate ABC transporter permease proteinchromosome CDS3704801 813 - 0.522755
degP ECA3301 protease Dochromosome CDS3708493 1467 - 0.539877
degQ ECA0303 exported proteasechromosome CDS348586 1371 - 0.531729
degS ECA0302 exported proteasechromosome CDS347351 1098 - 0.509107
djlA ECA3855 Dna-J like membrane chaperone proteinchromosome CDS4313211 876 - 0.526256
dnaJ ECA3881 chaperone protein DnaJchromosome CDS4342359 1140 - 0.549123
dnaK ECA3882 molecular chaperone DnaKchromosome CDS4343607 1908 - 0.506813
dsbA ECA0020 thiol:disulfide interchange proteinchromosome CDS24825 624 + 0.450321
dsbB ECA2362 disulfide bond formation protein Bchromosome CDS2674846 531 + 0.504708
dsbC ECA0771 thiol:disulfide interchange proteinchromosome CDS840892 717 + 0.523013
dsbD ECA0618 thiol:disulfide interchange protein precursorchromosome CDS690918 1734 - 0.563437
dsbE ECA1888 thiol:disulfide interchange proteinchromosome CDS2143337 558 + 0.546595
dsbG ECA0066 thiol:disulfide interchange proteinchromosome CDS80829 756 - 0.533069
fdhE ECA3002 formate dehydrogenase accessory protein FdhEchromosome CDS3355865 930 - 0.54086
fklB ECA3607 FkbP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4057307 621 - 0.542673
fkpA ECA4049 FkbP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4516657 819 - 0.484737
fkpB ECA3874 FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerasechromosome CDS4334383 474 - 0.550633
flgA ECA1701 flagellar basal body P-ring biosynthesis proteinchromosome CDS1950142 669 - 0.490284
flgJ ECA1710 flagellar biosynthesis proteinchromosome CDS1957413 963 + 0.49325
flgN ECA1699 flagella synthesis proteinchromosome CDS1949261 438 - 0.456621
fliJ ECA1722 flagellar proteinchromosome CDS1967157 447 - 0.46085
fliS ECA1729 flagellar protein FliSchromosome CDS1973615 411 - 0.486618
gcp ECA0683 O-sialoglycoprotein endopeptidasechromosome CDS755628 1014 + 0.560158
glnD ECA1029 PII uridylyl-transferasechromosome CDS1150431 2715 - 0.55175
glnE ECA3585 glutamate-ammonia-ligase adenylyltransferasechromosome CDS4029078 2856 - 0.55077
groEL ECA0625 chaperonin GroELchromosome CDS697515 1650 + 0.515152
groES ECA0624 co-chaperonin GroESchromosome CDS697176 294 + 0.472789
grpE ECA0842 heat shock proteinchromosome CDS932209 588 + 0.520408
grxA ECA2681 glutaredoxin 1chromosome CDS3016496 267 + 0.483146
grxB ECA2526 glutaredoxin 2chromosome CDS2842935 648 + 0.503086
gst ECA1938 glutathione S-transferasechromosome CDS2195117 609 - 0.474548
hflB ECA0698 cell division proteinchromosome CDS768185 1938 + 0.508772
hflC ECA3931 putative phage-related proteinchromosome CDS4398820 996 - 0.51004
hflK ECA3932 putative phage-related proteinchromosome CDS4399819 1254 - 0.5311
hscA ECA3233 chaperone protein HscAchromosome CDS3616632 1851 - 0.56564
hscB ECA3234 co-chaperone HscBchromosome CDS3618557 519 - 0.526012
hslO ECA4105 Hsp33-like chaperoninchromosome CDS4574406 870 + 0.527586
hslU ECA4262 ATP-dependent protease ATP-binding subunitchromosome CDS4776424 1332 + 0.529279
hslV ECA4261 ATP-dependent protease peptidase subunitchromosome CDS4775884 531 + 0.544256
htpG ECA1179 heat shock protein 90chromosome CDS1333507 1890 + 0.503175
htpX ECA2427 heat shock protein HtpXchromosome CDS2740491 882 - 0.515873
hypB ECA1234 hydrogenase isoenzyme nickel incorporation proteinchromosome CDS1404189 876 - 0.528539
hypC ECA1233 hydrogenase isoenzyme formation proteinchromosome CDS1403920 279 - 0.519713
hypD ECA1232 hydrogenase isoenzyme formation proteinchromosome CDS1402802 1119 - 0.532618
hypE ECA1231 hydrogenase isoenzyme formation proteinchromosome CDS1401792 1011 - 0.551929
hypF ECA1251 hydrogenase maturation proteinchromosome CDS1422749 2304 + 0.579427
ibpA ECA4403 heat shock protein Achromosome CDS4942274 414 - 0.521739
ibpB ECA4402 heat shock protein Bchromosome CDS4941693 453 - 0.532009
lon ECA1150 ATP-dependent protease lachromosome CDS1303620 2382 + 0.510076
msrA ECA3597 methionine sulfoxide reductase Achromosome CDS4046883 639 + 0.568075
msrB ECA2343 methionine sulfoxide reductase Bchromosome CDS2653967 420 - 0.535714
nifM ECA2941 nitrogen fixation proteinchromosome CDS3286909 798 - 0.567669
nifU ECA2946 nitrogen fixation proteinchromosome CDS3290800 840 - 0.567857
nrdG ECA0374 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS424243 465 - 0.546237
nrdH ECA3335 putative glutaredoxinchromosome CDS3744803 240 + 0.483333
nrfE ECA1879 cytochrome C-type biogenesis proteinchromosome CDS2135317 1878 + 0.562833
nrfF ECA1880 formate-dependent nitrite reductase complex subunitchromosome CDS2137187 402 + 0.542289
nrfG ECA1881 formate-dependent nitrite reductase complex subunitchromosome CDS2137585 831 + 0.559567
ohr ECA3167 organic hydroperoxide resistance proteinchromosome CDS3536586 426 - 0.514085
osmC ECA2221 osmotically inducible protein Cchromosome CDS2524682 429 + 0.51049
outO ECA3098 type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS3458845 849 - 0.551237
pcm ECA3532 protein-L-isoaspartate O-methyltransferasechromosome CDS3960622 627 - 0.523126
pcp ECA1354 pyrrolidone-carboxylate peptidasechromosome CDS1533499 648 + 0.54784
pilU ECA0543 putative prepilin peptidasechromosome CDS613398 660 + 0.530303
ppiA ECA4071 peptidyl-prolyl cis-trans isomerase Achromosome CDS4538833 570 - 0.503509
ppiB ECA3154 peptidyl-prolyl cis-trans isomerase Bchromosome CDS3520193 495 + 0.486869
ppiC ECA4216 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4714592 282 + 0.482269
ppiD ECA1152 peptidyl-prolyl cis-trans isomerase Dchromosome CDS1306869 1881 + 0.492291
ptrA ECA0994 protease III precursorchromosome CDS1106941 2949 + 0.527976
radA ECA0464 putative DNA repair proteinchromosome CDS528905 1383 - 0.571222
sirA ECA4353 hypothetical proteinchromosome CDS4874828 246 - 0.536585
slyD ECA4054 FkbP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4519847 585 - 0.538462
smpB ECA0836 SsrA-binding proteinchromosome CDS927358 483 - 0.505176
sohB ECA2288 proteasechromosome CDS2593787 1053 - 0.519468
sppA ECA2339 protease IVchromosome CDS2649493 1851 + 0.517018
sspA ECA0308 stringent starvation protein Achromosome CDS353367 642 + 0.515576
sufB ECA1860 hypothetical proteinchromosome CDS2112831 1500 + 0.530667
sufC ECA1861 probable ABC transporter ATP-dependent proteinchromosome CDS2114428 747 + 0.507363
sufD ECA1862 hypothetical proteinchromosome CDS2115176 1320 + 0.559091
surA ECA3857 survival proteinchromosome CDS4316738 1296 + 0.506944
tig ECA1147 trigger factorchromosome CDS1299536 1305 + 0.495785
tpx ECA1990 thiol peroxidasechromosome CDS2258122 504 - 0.503968
trxC ECA3517 thioredoxin 2chromosome CDS3938346 420 + 0.516667
 
Escherichia coli 536, 536
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECP_4556 hemolysin-activating lysine-acyltransferase HlyCchromosome CDS4766716 513 - 0.368421
NA ECP_2237 cytochrome c-type biogenesis protein CcmEchromosome CDS2332489 480 - 0.535417
NA ECP_0639 alkyl hydroperoxide reductase subunit Fchromosome CDS675516 1596 + 0.524436
NA ECP_1658 vitamin B12 transport periplasmic protein BtuEchromosome CDS1708345 552 - 0.481884
NA ECP_3318 protease DegS precursorchromosome CDS3483800 1068 + 0.52809
NA ECP_1377 thiol peroxidasechromosome CDS1409722 507 - 0.516765
NA ECP_1482 30S ribosomal protein S22chromosome CDS1525551 138 - 0.449275
NA ECP_0637 thiol:disulfide interchange protein DsbG precursorchromosome CDS673694 747 - 0.464525
NA ECP_2690 hydrogenase isoenzymes nickel incorporation protein HypBchromosome CDS2828573 873 + 0.558992
NA ECP_1714 protease IVchromosome CDS1766245 1857 + 0.519117
NA ECP_0058 DnaJ-like protein DjlAchromosome CDS59469 816 + 0.523284
NA ECP_4419 HflK proteinchromosome CDS4631655 1260 + 0.561905
NA ECP_3142 glutamate-ammonia-ligase adenylyltransferasechromosome CDS3308587 2172 - 0.552026
NA ECP_1599 hypothetical protein YdhD (putative glutaredoxin protein)chromosome CDS1648727 348 - 0.525862
NA ECP_3131 putative thiol-disulfide isomerase and thioredoxinchromosome CDS3298946 669 + 0.449925
NA ECP_2672 hydrogenase maturation protein HypFchromosome CDS2812151 2253 - 0.580115
NA ECP_3438 FKBP-type peptidyl-prolyl cis-trans isomerase SlyDchromosome CDS3589555 591 - 0.551607
NA ECP_1170 minor capsid protein Cchromosome CDS1211796 1320 + 0.606818
NA ECP_3317 protease DegQ precursorchromosome CDS3482343 1368 + 0.522661
NA ECP_3447 hypothetical protein YhfAchromosome CDS3597062 405 - 0.523457
NA ECP_2928 putative SPFH domain proteinchromosome CDS3095561 909 + 0.49505
NA ECP_0897 ATP-binding component of serine proteasechromosome CDS936997 2277 + 0.529644
NA ECP_0015 chaperone protein DnaJchromosome CDS14202 1161 + 0.542636
NA ECP_4165 pyruvate formate-lyase 2 activating enzymechromosome CDS4352981 879 + 0.546075
NA ECP_3437 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursorchromosome CDS3588243 813 - 0.483395
NA ECP_1322 possible protease SohBchromosome CDS1352440 1050 + 0.501905
NA ECP_0499 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS524654 1275 + 0.517647
NA ECP_4307 cytochrome c-type biogenesis protein NrfEchromosome CDS4517154 1659 + 0.576854
NA ECP_2869 hypothetical protein YqeBchromosome CDS3031497 1626 - 0.523985
NA ECP_0554 hypothetical proteinchromosome CDS584265 459 - 0.577342
NA ECP_4472 peptide methionine sulfoxide reductase MsrAchromosome CDS4678896 639 - 0.546166
NA ECP_3247 hypothetical peptidase YhbVchromosome CDS3412939 879 + 0.558589
NA ECP_0837 putative pyruvate formate-lyase 3 activating enzymechromosome CDS876763 900 - 0.535556
NA ECP_1750 hypothetical protease YeaZchromosome CDS1802422 696 - 0.556035
NA ECP_2125 putative protease YegQchromosome CDS2207957 1362 + 0.544787
NA ECP_3500 hypothetical protein YhgI (HesB-like domain)chromosome CDS3652148 576 + 0.526042
NA ECP_3132 putative disulfide isomerasechromosome CDS3299644 657 + 0.48554
NA ECP_3487 heat shock protein 33, redox regulated chaparonechromosome CDS3636093 885 + 0.528814
NA ECP_2496 hypothetical protein YfgC precursorchromosome CDS2614176 1464 + 0.536885
NA ECP_2341 glutathione S-transferasechromosome CDS2451908 648 + 0.512346
NA ECP_4599 hypothetical proteinchromosome CDS4806737 948 - 0.495781
NA ECP_3198 putative glutathione S-transferasechromosome CDS3367308 987 + 0.51773
NA ECP_0960 putative protease Lachromosome CDS1019913 1761 - 0.51732
NA ECP_4486 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS4696778 465 - 0.51828
NA ECP_3826 hemolysin-activating lysine-acyltransferase HlyCchromosome CDS3993046 513 + 0.368421
NA ECP_2833 protease III precursorchromosome CDS2986650 2889 - 0.507788
NA ECP_3711 glutaredoxin 3chromosome CDS3891849 252 - 0.5
NA ECP_1438 putative peptidasechromosome CDS1481076 2004 + 0.506986
NA ECP_3887 heat shock proteinchromosome CDS4050965 435 - 0.485057
NA ECP_2340 hypothetical GST-like protein YfcFchromosome CDS2451128 645 - 0.517829
NA ECP_0171 proteasechromosome CDS186110 1425 + 0.538947
NA ECP_4773 DNA repair protein RadAchromosome CDS4922785 1383 + 0.571945
NA ECP_0913 pyruvate formate-lyase 1 activating enzymechromosome CDS960899 741 - 0.497976
NA ECP_2692 hydrogenase isoenzymes formation protein HYpdchromosome CDS2829708 1122 + 0.546346
NA ECP_2494 bacterioferritin comigratory proteinchromosome CDS2612333 471 + 0.492569
NA ECP_4308 formate-dependent nitrite reductase complex NrfF subunit precursorchromosome CDS4518805 384 + 0.515625
NA ECP_2725 protein-L-isoaspartate O-methyltransferasechromosome CDS2864085 336 - 0.517857
NA ECP_0175 [protein-PII] uridylyltransferasechromosome CDS190451 2673 - 0.53685
NA ECP_0899 leucyl/phenylalanyl-tRNA-protein transferasechromosome CDS940520 705 - 0.537589
NA ECP_1773 probable protease HtpXchromosome CDS1823545 882 - 0.527211
NA ECP_2724 protein-L-isoaspartate O-methyltransferasechromosome CDS2863794 153 - 0.54902
NA ECP_0229 Clp ATPasechromosome CDS250351 2763 - 0.586681
NA ECP_1000 curved DNA-binding proteinchromosome CDS1058718 921 - 0.533116
NA ECP_1629 probable ATP-dependent transporter SufCchromosome CDS1676726 747 - 0.499331
NA ECP_4763 hypothetical protein YjjWchromosome CDS4912645 864 - 0.560185
NA ECP_2109 putative heat shock proteinchromosome CDS2185535 1353 + 0.560237
NA ECP_4380 thiol:disulfide interchange protein DsbD precursorchromosome CDS4593817 1698 - 0.536514
NA ECP_4387 60 kDa chaperoninchromosome CDS4601497 1647 + 0.529447
NA ECP_1859 flagellar protein FliSchromosome CDS1908138 411 + 0.486618
NA ECP_1726 peptide methionine sulfoxide reductase MsrBchromosome CDS1779425 414 - 0.480676
NA ECP_0920 putative metalloprotease YcaLchromosome CDS970815 774 + 0.488372
NA ECP_3246 putative protease YhbU precursorchromosome CDS3411935 996 + 0.572289
NA ECP_2235 thiol:disulfide interchange protein DsbEchromosome CDS2329923 630 - 0.552381
NA ECP_2531 chaperone protein HscAchromosome CDS2666380 1851 - 0.579687
NA ECP_0555 hypothetical proteinchromosome CDS584720 918 - 0.527233
NA ECP_4140 ATP-dependent hsl protease ATP-binding subunit HslUchromosome CDS4319820 1332 - 0.521772
NA ECP_2584 thioredoxin 2chromosome CDS2723969 420 + 0.502381
NA ECP_0497 trigger factorchromosome CDS522361 1299 + 0.510393
NA ECP_2532 chaperone protein HscBchromosome CDS2668247 516 - 0.523256
NA ECP_3694 hypothetical GST-like protein YibFchromosome CDS3870880 609 - 0.522168
NA ECP_2595 ClpB proteinchromosome CDS2739465 2574 - 0.511655
NA ECP_1056 glutaredoxin 2chromosome CDS1114290 648 - 0.489198
NA ECP_0586 peptidyl-prolyl cis-trans isomerase Bchromosome CDS616905 495 - 0.476768
NA ECP_2614 GrpE proteinchromosome CDS2757867 594 - 0.506734
NA ECP_3265 cell division protein FtsHchromosome CDS3435448 1935 - 0.53385
NA ECP_0534 chaperone protein HtpGchromosome CDS562361 1875 + 0.526933
NA ECP_2956 putative cytoplasmic protein YggXchromosome CDS3121811 276 + 0.471014
NA ECP_0863 glutaredoxin 1chromosome CDS904647 258 - 0.46124
NA ECP_2242 cytochrome c-type biogenesis ATP-binding protein CcmAchromosome CDS2334610 618 - 0.553398
NA ECP_3454 peptidyl-prolyl cis-trans isomerase A precursorchromosome CDS3603384 573 - 0.513089
NA ECP_2693 hydrogenase isoenzymes formation protein HypEchromosome CDS2830826 1011 + 0.571711
NA ECP_2515 putative cytoplasmic proteinchromosome CDS2645350 216 - 0.453704
NA ECP_0026 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerasechromosome CDS27352 450 + 0.546667
NA ECP_0498 ATP-dependent Clp protease proteolytic subunitchromosome CDS523905 624 + 0.501603
NA ECP_1580 glutathione S-transferasechromosome CDS1633739 606 + 0.504951
NA ECP_2886 thiol:disulfide interchange protein DsbC precursorchromosome CDS3056995 711 - 0.483826
NA ECP_4070 thiol:disulfide interchange protein DsbA precursorchromosome CDS4249111 627 + 0.476874
NA ECP_2691 hydrogenase isoenzymes formation protein HypCchromosome CDS2829436 273 + 0.542125
NA ECP_3565 SirA proteinchromosome CDS3728763 246 - 0.50813
NA ECP_1876 flagellar FliJ proteinchromosome CDS1922872 444 + 0.522523
NA ECP_4141 ATP-dependent protease HslVchromosome CDS4321161 531 - 0.52919
NA ECP_3973 thioredoxin 1chromosome CDS4148573 435 + 0.485057
NA ECP_0014 chaperone protein DnaKchromosome CDS12227 1917 + 0.510694
NA ECP_0852 hypothetical GST-like protein YliJchromosome CDS894005 627 - 0.519936
NA ECP_2930 putative metalloprotease YggGchromosome CDS3098832 885 + 0.518644
NA ECP_1228 disulfide bond formation protein Bchromosome CDS1252970 531 - 0.527307
NA ECP_2137 hypothetical protein YegU (putative hydrolase)chromosome CDS2220591 1005 + 0.550249
NA ECP_3154 probable O-sialoglycoprotein endopeptidasechromosome CDS3321216 1014 - 0.565089
NA ECP_2241 cytochrome c-type biogenesis protein CcmBchromosome CDS2333951 663 - 0.564103
NA ECP_2638 glutaredoxin-like protein NrdHchromosome CDS2777998 246 + 0.544715
NA ECP_1864 hypothetical protein YedFchromosome CDS1912314 234 + 0.478632
NA ECP_4103 protein FdhEchromosome CDS4283584 930 - 0.554839
NA ECP_0638 alkyl hydroperoxide reductase C22 proteinchromosome CDS674812 564 + 0.496454
NA ECP_3961 putative magnesium chelatase family proteinchromosome CDS4132239 1521 - 0.507561
NA ECP_3075 hypothetical proteinchromosome CDS3240930 585 + 0.547009
NA ECP_0500 ATP-dependent protease Lachromosome CDS526116 2355 + 0.52569
NA ECP_3076 hydrogenase-2 operon protein HybGchromosome CDS3241584 249 - 0.53012
NA ECP_0502 peptidyl-prolyl cis-trans isomerase Dchromosome CDS529143 1872 + 0.520833
NA ECP_2236 cytochrome c-type biogenesis protein CcmFchromosome CDS2330549 1944 - 0.56893
NA ECP_4386 10 kDa chaperoninchromosome CDS4601160 294 + 0.486395
NA ECP_3968 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4143225 282 - 0.507092
NA ECP_3888 heat shock proteinchromosome CDS4051505 414 - 0.471014
NA ECP_1710 chaperone protein HscCchromosome CDS1760354 1701 - 0.450911
NA ECP_1484 osmotically inducible protein Cchromosome CDS1526350 432 + 0.497685
NA ECP_4420 HflC proteinchromosome CDS4632917 1005 + 0.523383
NA ECP_3311 stringent starvation protein Achromosome CDS3478381 639 - 0.536776
NA ECP_2755 hypothetical protein YgcFchromosome CDS2895582 672 - 0.508929
NA ECP_4461 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerasechromosome CDS4667513 621 + 0.563607
NA ECP_0558 putative thioredoxin YbbN proteinchromosome CDS587289 891 - 0.545455
 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_3756 hypothetical proteinchromosome CDS3071118 672 - 0.520833
NA APECO1_3052 hypothetical proteinchromosome CDS3831269 576 + 0.527778
NA APECO1_3374 putative disulfide isomerasechromosome CDS3482526 669 + 0.446936
NA APECO1_387 cryptic prophage CP-933M antitermination protein Q-like proteinchromosome CDS1340531 822 + 0.502433
NA APECO1_2294 putative pyruvate-formate lyase-activating enzymechromosome CDS4729806 918 - 0.466231
NA APECO1_3373 putative disulfide isomerasechromosome CDS3483209 672 + 0.485119
NA APECO1_3595 putative serine proteasechromosome CDS3272377 909 + 0.493949
NA APECO1_2035 lambdoid prophage Qin antitermination protein Q-like proteinchromosome CDS5017174 795 + 0.483019
NA APECO1_3883 Qin-like prophage; predicted antitermination protein Qchromosome CDS2943425 753 - 0.471448
NA APECO1_3712 putative ATPases with chaperone activity, ATP-binding subunitchromosome CDS3123689 2646 + 0.603553
NA APECO1_2002 hypothetical proteinchromosome CDS5054688 864 - 0.560185
NA APECO1_3099 hypothetical proteinchromosome CDS3776196 405 - 0.516049
NA APECO1_2026 putative protease/scaffold proteinchromosome CDS5028569 2178 + 0.517906
aec27 APECO1_1767 putative ATPase with chaperone activitychromosome CDS251007 2760 - 0.587681
ahpC APECO1_1444 alkyl hydroperoxide reductase, C22 subunitchromosome CDS624401 564 + 0.496454
ahpF APECO1_1443 alkyl hydroperoxide reductase subunit Fchromosome CDS625105 1596 + 0.524436
bcp APECO1_4077 thioredoxin-dependent thiol peroxidasechromosome CDS2722612 471 + 0.492569
btuE APECO1_785 vitamin B12 transport proteinchromosome CDS1810372 552 - 0.481884
cbpA APECO1_93 curved DNA-binding proteinchromosome CDS1050299 921 - 0.53203
ccmB APECO1_4359 heme exporter protein Bchromosome CDS2405932 663 - 0.559578
ccmC APECO1_4360 heme exporter protein Cchromosome CDS2405153 738 - 0.552846
ccmE APECO1_4361 periplasmic heme chaperonechromosome CDS2404471 480 - 0.539583
ccmF APECO1_4362 heme lyase, CcmF subunitchromosome CDS2402531 1944 - 0.569959
ccmG APECO1_4363 periplasmic thioredoxin of cytochrome c-type biogenesischromosome CDS2401977 558 - 0.553763
ccmH APECO1_4364 heme lyase, CcmH subunitchromosome CDS2400928 1053 - 0.54321
clpB APECO1_3938 heat shock proteinchromosome CDS2890825 2586 - 0.513148
clpP APECO1_1574 ATP-dependent proteolytic subunit of ClpA-ClpP serine proteasechromosome CDS472393 624 + 0.501603
clpX APECO1_1573 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS473142 1275 + 0.519216
degQ APECO1_3210 periplasmic serine endoprotease DegQchromosome CDS3663322 1368 + 0.522661
degS APECO1_3209 periplasmic serine endoprotease DegSchromosome CDS3664779 1068 + 0.523408
djlA APECO1_1927 Dna-J like membrane chaperone proteinchromosome CDS60450 909 + 0.518152
dnaJ APECO1_1964 chaperone with DnaK; heat shock proteinchromosome CDS14170 1161 + 0.544358
dnaK APECO1_1965 molecular chaperone DnaKchromosome CDS12195 1917 + 0.511215
dsbA APECO1_2601 DsbA, periplasmic protein disulfide isomerase Ichromosome CDS4361589 627 + 0.480064
dsbB APECO1_297 disulfide bond formation protein Bchromosome CDS1243659 537 - 0.523277
dsbC APECO1_3634 protein disulfide isomerase IIchromosome CDS3233873 711 - 0.481013
dsbD APECO1_2252 thiol:disulfide interchange protein precursorchromosome CDS4771181 1779 - 0.532884
dsbG APECO1_1445 thiol:disulfide interchange protein dsbG precursorchromosome CDS623283 807 - 0.460967
fdhE APECO1_2574 formate dehydrogenase accessory protein FdhEchromosome CDS4393159 930 - 0.547312
fklB APECO1_2179 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS4845269 780 + 0.530769
fkpA APECO1_3106 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3767389 813 - 0.483395
fliS APECO1_966 flagellar protein FliSchromosome CDS2010536 411 + 0.481752
glnD APECO1_1820 PII uridylyl-transferasechromosome CDS191020 2673 - 0.536102
glnE APECO1_3361 glutamate-ammonia-ligase adenylyltransferasechromosome CDS3497509 2913 - 0.555441
groEL APECO1_2246 chaperonin GroELchromosome CDS4778861 1647 + 0.530662
grxB APECO1_146 GrxBchromosome CDS1105763 648 - 0.489198
hflB APECO1_3254 putative ATP-dependent zinc metalloproteasechromosome CDS3617731 1935 - 0.532817
hflC APECO1_2216 protease specific for phage lambda cII repressorchromosome CDS4810836 1005 + 0.523383
hflK APECO1_2217 HflK protein, regulator of FtsH protease, subunit of HflK-HflC complexchromosome CDS4809574 1260 + 0.562698
hscA APECO1_3999 chaperone protein HscAchromosome CDS2816478 1905 - 0.573753
hscB APECO1_3998 co-chaperone HscBchromosome CDS2818345 516 - 0.517442
hslJ APECO1_553 heat shock protein HslJchromosome CDS1527808 423 - 0.477541
hslO APECO1_3063 Hsp33-like chaperoninchromosome CDS3815213 885 + 0.525424
hslU APECO1_2539 ATP-dependent protease ATP-binding subunitchromosome CDS4429428 1332 - 0.522523
hslV APECO1_2538 ATP-dependent hslVU protease peptidase subunit hslVchromosome CDS4430769 531 - 0.525424
htpG APECO1_1542 heat shock protein 90chromosome CDS510849 1875 + 0.528
htpX APECO1_884 heat shock proteinchromosome CDS1919610 882 - 0.531746
htrA APECO1_1824 periplasmic serine protease Do, heat shock protein HtrAchromosome CDS186681 1425 + 0.537544
hyaE APECO1_80 protein involved in processing of HyaA and HyaB proteinschromosome CDS1032643 399 + 0.548872
hypB APECO1_3798 GTP hydrolase involved in nickel liganding into hydrogenaseschromosome CDS3025251 873 + 0.558992
hypC APECO1_3797 protein required for maturation of hydrogenases 1 and 3chromosome CDS3026114 273 + 0.542125
hypD APECO1_3796 protein required for maturation of hydrogenaseschromosome CDS3026386 1122 + 0.542781
hypE APECO1_3795 carbamoyl phosphate phosphatase, hydrogenase 3 maturation proteinchromosome CDS3027546 969 + 0.574819
hypF APECO1_3814 hydrogenase maturation protein HypFchromosome CDS3008829 2253 - 0.57834
ibpA APECO1_2770 heat shock proteinchromosome CDS4161373 414 - 0.471014
ibpB APECO1_2771 heat shock proteinchromosome CDS4160833 435 - 0.485057
lon APECO1_1572 DNA-binding ATP-dependent protease Lachromosome CDS474559 2400 + 0.52375
msrA APECO1_2169 methionine sulfoxide reductase Achromosome CDS4856810 666 - 0.54955
nrdG APECO1_2155 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS4874693 465 - 0.516129
nrfE APECO1_2381 formate-dependent nitrite reductase subunit nrfEchromosome CDS4633208 1659 + 0.56962
osmC APECO1_617 osmotically inducible protein OsmCchromosome CDS1612454 432 + 0.5
pcm APECO1_3780 protein-L-isoaspartate O-methyltransferasechromosome CDS3045655 627 - 0.53429
pflA APECO1_1190 pyruvate formate lyase-activating enzyme 1chromosome CDS918973 798 - 0.492481
pflC APECO1_2515 pyruvate formate-lyase 2 activating enzymechromosome CDS4462520 948 + 0.551688
ppiA APECO1_3093 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS3782507 573 - 0.511344
ppiC APECO1_2696 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS4253100 282 - 0.510638
ppiD APECO1_1570 peptidyl-prolyl isomerasechromosome CDS477631 1872 + 0.521368
ptrA APECO1_3684 protease III precursorchromosome CDS3163527 2889 - 0.50848
radA APECO1_1992 DNA repair protein RadAchromosome CDS5065871 1383 + 0.573391
slpA APECO1_1955 putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS27317 450 + 0.546667
slyD APECO1_3105 FKBP-type peptidyl-prolyl cis-trans isomerase SlyDchromosome CDS3768689 591 - 0.551607
smpB APECO1_3915 trans-translation proteinchromosome CDS2914010 483 + 0.515528
sohB APECO1_432 possible protease SohBchromosome CDS1388193 1050 + 0.504762
sppA APECO1_835 protease IVchromosome CDS1862310 1857 + 0.51804
sspA APECO1_3215 stringent starvation protein Achromosome CDS3659360 639 - 0.536776
sufB APECO1_760 component of SufBCD complexchromosome CDS1779508 1527 - 0.517354
surA APECO1_1929 survival proteinchromosome CDS56595 1287 - 0.539239
tig APECO1_1575 trigger factorchromosome CDS470849 1290 + 0.513178
tpx APECO1_477 thiol peroxidasechromosome CDS1445476 507 - 0.514793
trxB APECO1_1201 Thioredoxin reductasechromosome CDS902888 1071 - 0.517274
trxC APECO1_3950 thioredoxin 2chromosome CDS2872638 420 + 0.497619
ybbK APECO1_1520 putative protease YbbKchromosome CDS534438 918 - 0.526144
ybbN APECO1_1517 putative thioredoxin domain-containing proteinchromosome CDS537007 891 - 0.553311
ybiY APECO1_1269 putative pyruvate formate lyase activating enzymechromosome CDS825428 900 - 0.527778
ycaL APECO1_21 YcaLchromosome CDS963735 774 + 0.488372
ycbZ APECO1_60 YcbZchromosome CDS1012826 1587 - 0.522369
ydhO APECO1_735 hypothetical proteinchromosome CDS1750754 348 - 0.522988
yeaA APECO1_846 peptide methionine sulfoxide reductasechromosome CDS1875489 444 - 0.47973
yeaZ APECO1_865 O-sialoglycoprotein endopeptidasechromosome CDS1898486 696 - 0.556035
yegD APECO1_1160 hypothetical chaperone proteinchromosome CDS2235302 1353 + 0.55728
yegQ APECO1_1176 hypothetical proteinchromosome CDS2257723 1362 + 0.543319
yegW APECO1_4446 putative hydrolasechromosome CDS2293629 1005 + 0.550249
yfcF APECO1_4263 putative glutathione S-transferasechromosome CDS2524672 645 - 0.52093
yfcG APECO1_4262 putative S-transferasechromosome CDS2525452 648 + 0.510802
yfgC APECO1_4075 putative peptidase YfgCchromosome CDS2724455 1464 + 0.535519
yggG APECO1_3593 putative metalloprotease YggGchromosome CDS3275648 885 + 0.520904
yggX APECO1_3539 hypothetical proteinchromosome CDS3298744 276 + 0.471014
yghU APECO1_3432 putative glutathione S-transferasechromosome CDS3422399 915 + 0.53224
ygjD APECO1_3350 O-sialoglycoprotein endopeptidasechromosome CDS3510246 1014 - 0.564103
yhbU APECO1_3272 putative collagenasechromosome CDS3594220 996 + 0.569277
yhbV APECO1_3271 putative proteasechromosome CDS3595206 897 + 0.562988
yibF APECO1_2861 predicted glutathione S-transferasechromosome CDS4058062 609 - 0.525452
yifB APECO1_2704 putative bifunctional enzyme and transcriptional regulatorchromosome CDS4242114 1551 - 0.506125
yliJ APECO1_1255 predicted glutathione S-transferasechromosome CDS842670 633 - 0.518167
yqeB APECO1_3651 putative synthasechromosome CDS3208375 1626 - 0.5246
yqjG APECO1_3318 putative glutathione S-transferasechromosome CDS3550461 987 + 0.516717
 
Escherichia coli CFT073, CFT073
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA c1880 hypothetical proteinchromosome CDS1715196 330 + 0.433333
NA c0348 hypothetical proteinchromosome CDS323695 243 + 0.432099
NA c4538 Putative pyruvate formate-lyase 3 activating enzymechromosome CDS4318098 918 + 0.465142
NA c3787 putative disulfide oxidoreductasechromosome CDS3621354 672 + 0.483631
NA c0909 Putative pyruvate formate-lyase 3 activating enzymechromosome CDS883507 927 - 0.531823
NA c3786 Putative disulfide isomerasechromosome CDS3620671 669 + 0.446936
NA c1426 Antitermination protein Q homolog of cryptic prophagechromosome CDS1340628 822 + 0.493917
NA c3392 ClpB proteinchromosome CDS3229545 2637 + 0.603337
NA c1091 Putative protease La homologchromosome CDS1060314 1761 - 0.515616
NA c4688 hypothetical proteinchromosome CDS4450708 330 - 0.490909
NA c3186 Antitermination protein Q homolog from lambdoid prophage Qinchromosome CDS3053277 783 - 0.480204
NA c1209 hypothetical proteinchromosome CDS1166202 396 + 0.477273
NA c1572 Putative capsid assembly protein of prophagechromosome CDS1429149 1506 + 0.60093
NA c1448 Putative capsid assembly protein of prophagechromosome CDS1352906 1506 + 0.602922
NA c1879 hypothetical proteinchromosome CDS1714907 177 + 0.468927
NA c3170 Putative capsid protein of prophagechromosome CDS3040953 1434 - 0.609484
NA c3517 hypothetical proteinchromosome CDS3373532 735 + 0.469388
aat c1022 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS980857 705 - 0.53617
ahpC c0694 Alkyl hydroperoxide reductase C22 proteinchromosome CDS680944 564 + 0.496454
ahpF c0695 Alkyl hydroperoxide reductase subunit Fchromosome CDS681648 1596 + 0.522556
bcp c3008 bacterioferritin comigratory proteinchromosome CDS2871215 471 + 0.490446
btuE c2106 Vitamin B12 transport periplasmic protein btuEchromosome CDS1949526 552 - 0.48913
cbpA c1136 Curved DNA-binding proteinchromosome CDS1097799 921 - 0.533116
ccmA c2738 Heme exporter protein Achromosome CDS2584529 624 - 0.55609
ccmB c2737 Heme exporter protein Bchromosome CDS2583870 663 - 0.564103
ccmC c2736 Heme exporter protein Cchromosome CDS2583091 762 - 0.548556
ccmE c2734 Cytochrome c-type biogenesis protein ccmEchromosome CDS2582409 480 - 0.539583
ccmF c2733 Cytochrome c-type biogenesis protein ccmFchromosome CDS2580469 1944 - 0.567901
ccmH c2731 Cytochrome c-type biogenesis protein ccmH precursorchromosome CDS2578866 1053 - 0.54226
clpA c1019 ATP-dependent clp protease ATP-binding subunit clpAchromosome CDS977378 2292 + 0.529668
clpB c3114 ClpB proteinchromosome CDS2994301 2586 - 0.511988
clpP c0553 ATP-dependent Clp protease proteolytic subunitchromosome CDS530604 624 + 0.501603
clpX c0554 ATP-dependent protease ATP-binding subunitchromosome CDS531353 1275 + 0.516863
cydC c1023 Transport ATP-binding protein cydCchromosome CDS981603 1722 - 0.537747
cydD c1024 Transport ATP-binding protein cydDchromosome CDS983325 1767 - 0.535371
cyoE c0539 protoheme IX farnesyltransferasechromosome CDS520743 891 - 0.533109
cysU c2958 Sulfate transport system permease protein cysTchromosome CDS2821614 834 - 0.565947
degQ c3989 Protease degQ precursorchromosome CDS3804182 1410 + 0.516312
degS c3990 Protease degS precursorchromosome CDS3805681 1068 + 0.530899
djlA c0068 Dna-J like membrane chaperone proteinchromosome CDS60463 909 + 0.517052
dnaJ c0020 Chaperone protein dnaJchromosome CDS14951 1131 + 0.548187
dnaK c0019 molecular chaperone DnaKchromosome CDS12946 1917 + 0.510694
dsbA c4804 Thiol:disulfide interchange protein dsbA precursorchromosome CDS4568909 627 + 0.480064
dsbB c1633 disulfide bond formation protein Bchromosome CDS1469815 537 - 0.52514
dsbC c3473 Thiol:disulfide interchange protein dsbC precursorchromosome CDS3335085 711 - 0.482419
dsbD c5218 thiol:disulfide interchange protein precursorchromosome CDS4972379 1698 - 0.53828
dsbE c2732 Thiol:disulfide interchange protein dsbEchromosome CDS2579915 558 - 0.550179
dsbG c0692 Thiol:disulfide interchange protein dsbG precursorchromosome CDS679826 807 - 0.460967
fdhE c4841 formate dehydrogenase accessory protein FdhEchromosome CDS4603811 930 - 0.547312
fklB c5306 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerasechromosome CDS5045893 780 + 0.532051
fkpA c4121 FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursorchromosome CDS3907995 813 - 0.484625
flgA c1341 flagellar basal body P-ring biosynthesis proteinchromosome CDS1273707 660 - 0.536364
flgJ c1350 flagellar biosynthesis proteinchromosome CDS1280842 972 + 0.539095
flgN c1339 Flagella synthesis protein flgNchromosome CDS1272917 417 - 0.482014
fliJ c2359 flagellar proteinchromosome CDS2169714 444 + 0.522523
fliS c2340 flagellar protein FliSchromosome CDS2154981 411 + 0.479319
glnD c0202 PII uridylyl-transferasechromosome CDS196276 2673 - 0.537972
glnE c3801 Glutamate-ammonia-ligase adenylyltransferasechromosome CDS3635654 2952 - 0.553862
groEL c5227 chaperonin GroELchromosome CDS4980059 1647 + 0.530662
groES c5226 co-chaperonin GroESchromosome CDS4979722 294 + 0.486395
grpE c3135 GrpE proteinchromosome CDS3012701 594 - 0.506734
grxA c0982 Glutaredoxin 1chromosome CDS944871 273 - 0.465201
grxB c1331 Glutaredoxin 2chromosome CDS1266907 648 - 0.489198
grxC c4433 Glutaredoxin 3chromosome CDS4218377 252 - 0.5
gst c2027 Glutathione S-transferasechromosome CDS1874906 606 + 0.504951
hflC c5259 HflC proteinchromosome CDS5011460 1005 + 0.523383
hflK c5258 HflK proteinchromosome CDS5010198 1260 + 0.561905
hlyC c3569 Hemolysin Cchromosome CDS3418210 675 + 0.348148
hofD c4106 Leader peptidasechromosome CDS3896922 678 + 0.504425
hscA c3051 chaperone protein HscAchromosome CDS2925266 1905 - 0.575853
hscB c3052 co-chaperone HscBchromosome CDS2927133 516 - 0.523256
hslJ c1826 Heat shock protein hslJchromosome CDS1659061 435 - 0.478161
hslO c4172 Hsp33-like chaperoninchromosome CDS3955821 885 + 0.527684
hslU c4884 ATP-dependent protease ATP-binding subunitchromosome CDS4640110 1332 - 0.521021
hslV c4885 ATP-dependent protease peptidase subunitchromosome CDS4641451 531 - 0.52919
htpG c0593 heat shock protein 90chromosome CDS569770 1875 + 0.526933
htpX c2238 heat shock protein HtpXchromosome CDS2063367 882 - 0.531746
htrA c0197 Protease do precursorchromosome CDS191223 1425 + 0.540351
hyaE c1117 Hydrogenase-1 operon protein hyaEchromosome CDS1080143 399 + 0.551378
hybG c3727 Hydrogenase-2 operon protein hybGchromosome CDS3561590 249 - 0.522088
hypB c3287 Hydrogenase isoenzyme nickel incorporation protein hypBchromosome CDS3131693 873 + 0.556701
hypC c3288 Hydrogenase isoenzyme formation protein hypCchromosome CDS3132556 273 + 0.542125
hypD c3289 Hydrogenase isoenzyme formation protein hypDchromosome CDS3132828 1122 + 0.549911
hypE c3290 Hydrogenase isoenzyme formation protein hypEchromosome CDS3133946 1011 + 0.570722
hypF c3268 Hydrogenase maturation protein hypFchromosome CDS3117740 2325 - 0.579355
ibpA c4607 16 kDa heat shock protein Achromosome CDS4368745 420 - 0.469048
ibpB c4606 16 kDa heat shock protein Bchromosome CDS4368205 435 - 0.485057
lon c0555 ATP-dependent protease Lachromosome CDS532770 2400 + 0.5225
mchD c1230 MchD proteinchromosome CDS1178897 453 + 0.423841
msrA c5317 methionine sulfoxide reductase Achromosome CDS5057435 705 - 0.540426
nrdG c5336 Anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS5076974 465 - 0.516129
nrdH c3226 Glutaredoxin-like protein nrdHchromosome CDS3081260 246 + 0.536585
nrfE c5070 Cytochrome c-type biogenesis protein nrfEchromosome CDS4844772 1683 + 0.572192
nrfF c5071 Formate-dependent nitrite reductase complex nrfF subunit precursorchromosome CDS4846447 384 + 0.513021
nrfG c5072 Formate-dependent nitrite reductase complex nrfG subunitchromosome CDS4846827 597 + 0.522613
osmC c1916 Osmotically inducible protein Cchromosome CDS1749589 432 + 0.49537
pcm c3310 protein-L-isoaspartate O-methyltransferasechromosome CDS3152102 627 - 0.53429
pflA c1038 Pyruvate formate-lyase 1 activating enzymechromosome CDS1001299 768 - 0.501302
pflC c4911 Pyruvate formate-lyase 2 activating enzymechromosome CDS4673271 879 + 0.547213
ppiA c4138 Peptidyl-prolyl cis-trans isomerase A precursorchromosome CDS3923113 573 - 0.514834
ppiB c0641 Peptidyl-prolyl cis-trans isomerase Bchromosome CDS623001 495 - 0.476768
ppiC c4697 Peptidyl-prolyl cis-trans isomerase Cchromosome CDS4460473 282 - 0.507092
ptr c3415 Protease III precursorchromosome CDS3263316 2889 - 0.507788
rpsV c1913 30S ribosomal protein S22chromosome CDS1748790 138 - 0.449275
slpA c0032 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerasechromosome CDS28071 450 + 0.544444
slyD c4123 FKBP-type peptidyl-prolyl cis-trans isomerase slyDchromosome CDS3909295 591 - 0.551607
smpB c3142 SsrA-binding proteinchromosome CDS3017482 483 + 0.515528
sms c5474 DNA repair protein radAchromosome CDS5215245 1431 + 0.583508
sohB c1737 Possible protease sohBchromosome CDS1572932 1050 + 0.50381
sppA c2170 Protease IVchromosome CDS2006066 1857 + 0.518578
sspA c3982 stringent starvation protein Achromosome CDS3800262 639 - 0.536776
surA c0066 Survival protein surA precursorchromosome CDS56608 1287 - 0.537685
tig c0551 trigger factorchromosome CDS529060 1299 + 0.513472
tpx c1796 thiol peroxidasechromosome CDS1630926 507 - 0.516765
trxA c4701 thioredoxinchromosome CDS4465820 435 + 0.485057
trxB c1025 Thioredoxin reductasechromosome CDS985214 1086 - 0.515654
trxC c3107 Thioredoxin 2chromosome CDS2981427 420 + 0.497619
ybaU c0557 Peptidyl-prolyl cis-trans isomerase Dchromosome CDS535842 1872 + 0.521368
ybbJ c0609 Hypothetical protein ybbJchromosome CDS590361 459 - 0.583878
ybbK c0610 Hypothetical protein ybbKchromosome CDS590816 918 - 0.527233
ybbN c0613 Hypothetical protein ybbNchromosome CDS593386 891 - 0.546577
ybeW c2164 Chaperone protein hscCchromosome CDS1999554 1701 - 0.451499
ycaL c1047 Putative metalloprotease ycaLchromosome CDS1011216 774 + 0.489664
yciQ c1733 Hypothetical protein yciQchromosome CDS1568347 1893 + 0.472266
ydcP c1859 Putative protease ydcP precursorchromosome CDS1697478 2004 + 0.506487
ydhD c2048 Protein ydhDchromosome CDS1889895 348 - 0.525862
ydhH c2032 Hypothetical protein ydhHchromosome CDS1879022 1110 - 0.554955
yeaA c2183 methionine sulfoxide reductase Bchromosome CDS2019246 444 - 0.47973
yeaZ c2211 Hypothetical protease yeaZchromosome CDS2042244 696 - 0.558908
yedF c2345 Hypothetical protein yedFchromosome CDS2159157 234 + 0.482906
yegD c2596 Hypothetical chaperone protein yegDchromosome CDS2434939 1416 + 0.556497
yegQ c2611 Putative protease yegQchromosome CDS2457424 1362 + 0.543319
yegU c2626 Hypothetical protein yegUchromosome CDS2470767 1005 + 0.545274
yfcF c2844 Hypothetical GST-like protein yfcFchromosome CDS2702344 645 - 0.51938
yfcG c2845 Hypothetical GST-like protein yccGchromosome CDS2703124 648 + 0.512346
yfgJ c3032 Hypothetical protein yfgJchromosome CDS2904232 216 - 0.453704
ygcF c3335 Hypothetical protein ygcFchromosome CDS3177637 672 - 0.508929
yggG c3521 Putative metalloprotease yggGchromosome CDS3376764 978 + 0.517382
yggX c3550 hypothetical proteinchromosome CDS3399952 276 + 0.471014
yghU c3726 Hypothetical GST-like protein yghUchromosome CDS3560534 915 + 0.536612
ygjD c3815 Probable O-sialoglycoprotein endopeptidasechromosome CDS3650124 1014 - 0.564103
yhbU c3911 Putative protease yhbU precursorchromosome CDS3735090 1023 + 0.56305
yhbV c3912 Hypothetical protein yhbVchromosome CDS3736103 897 + 0.558528
yhfA c4131 Hypothetical protein yhfAchromosome CDS3916802 405 - 0.51358
yhgI c4191 Protein yhgIchromosome CDS3972233 576 + 0.527778
yhhP c4263 hypothetical proteinchromosome CDS4047406 246 - 0.50813
yibF c4413 Hypothetical GST-like protein yibFchromosome CDS4197047 609 - 0.527094
yifB c4687 Hypothetical protein yifBchromosome CDS4449486 1086 - 0.514733
yjjW c5462 Hypothetical protein yjjWchromosome CDS5203398 864 - 0.55787
yliJ c0923 Hypothetical GST-like protein yliJchromosome CDS900748 633 - 0.519747
ynhC c2076 SufD proteinchromosome CDS1916660 1272 - 0.533805
ynhD c2077 Probable ATP-dependent transporter sufCchromosome CDS1917906 747 - 0.499331
ynhE c2078 SufB proteinchromosome CDS1918662 1527 - 0.516045
 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
aat b0885 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS925951 705 - 0.540426
ahpC b0605 alkyl hydroperoxide reductase, C22 subunitchromosome CDS638168 564 + 0.5
ahpF b0606 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-bindingchromosome CDS638976 1566 + 0.53129
bcp b2480 thioredoxin-dependent thiol peroxidasechromosome CDS2598500 471 + 0.494692
btuE b1710 predicted glutathione peroxidasechromosome CDS1791582 552 - 0.494565
cbpA b1000 curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaKchromosome CDS1062078 921 - 0.528773
ccmB b2200 heme exporter subunitchromosome CDS2294384 663 - 0.559578
ccmC b2199 heme exporter subunitchromosome CDS2293605 738 - 0.552846
ccmE b2197 periplasmic heme chaperonechromosome CDS2292923 480 - 0.535417
ccmF b2196 heme lyase, CcmF subunitchromosome CDS2290983 1944 - 0.570988
ccmG b2195 periplasmic thioredoxin of cytochrome c-type biogenesischromosome CDS2290429 558 - 0.544803
ccmH b2194 heme lyase, CcmH subunitchromosome CDS2289380 1053 - 0.540361
clpA b0882 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activitychromosome CDS922487 2277 + 0.526131
clpB b2592 protein disaggregation chaperonechromosome CDS2729622 2574 - 0.514374
clpP b0437 ATP-dependent Clp protease proteolytic subunitchromosome CDS455901 624 + 0.511218
clpX b0438 ATP-dependent protease ATP-binding subunitchromosome CDS456650 1275 + 0.515294
csgA b1042 cryptic curlin major subunitchromosome CDS1103670 456 + 0.510965
cydC b0886 fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding componentchromosome CDS926697 1722 - 0.537747
cydD b0887 fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding componentchromosome CDS928419 1767 - 0.536503
cyoE b0428 protoheme IX farnesyltransferasechromosome CDS446039 891 - 0.537598
cysU b2424 sulfate/thiosulfate transporter subunitchromosome CDS2539701 834 - 0.56235
degP b0161 serine endoprotease (protease Do), membrane-associatedchromosome CDS180884 1425 + 0.539649
degQ b3234 serine endoprotease, periplasmicchromosome CDS3378765 1368 + 0.520468
degS b3235 serine endoprotease, periplasmicchromosome CDS3380222 1068 + 0.527154
dipZ b4136 thiol:disulfide interchange protein precursorchromosome CDS4361368 1698 - 0.54417
djlA b0055 Dna-J like membrane chaperone proteinchromosome CDS57364 816 + 0.526961
djlB b0646 predicted chaperonechromosome CDS676638 1428 + 0.47479
dnaJ b0015 chaperone Hsp40, co-chaperone with DnaKchromosome CDS14168 1131 + 0.551724
dnaK b0014 molecular chaperone DnaKchromosome CDS12163 1917 + 0.511215
dsbA b3860 periplasmic protein disulfide isomerase Ichromosome CDS4041441 627 + 0.480064
dsbB b1185 disulfide bond formation protein Bchromosome CDS1231723 531 - 0.527307
dsbC b2893 protein disulfide isomerase IIchromosome CDS3036134 711 - 0.483826
dsbG b0604 periplasmic disulfide isomerase/thiol-disulphide oxidasechromosome CDS637050 747 - 0.468541
fdhE b3891 formate dehydrogenase accessory protein FdhEchromosome CDS4078322 930 - 0.546237
fklB b4207 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4426958 621 + 0.557166
fkpA b3347 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3474629 813 - 0.482165
fkpB b0028 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS25826 450 + 0.544444
flgA b1072 flagellar basal body P-ring biosynthesis protein Achromosome CDS1129427 660 - 0.522727
flgJ b1081 flagellar biosynthesis protein FlgJchromosome CDS1136594 942 + 0.546709
flgN b1070 export chaperone for FlgK and FlgLchromosome CDS1128637 417 - 0.482014
fliJ b1942 flagellar biosynthesis chaperonechromosome CDS2015970 444 + 0.515766
fliS b1925 flagellar protein FliSchromosome CDS2003327 411 + 0.498783
ftsH b3178 protease, ATP-dependent zinc-metallochromosome CDS3323023 1935 - 0.535917
glnD b0167 PII uridylyl-transferasechromosome CDS185978 2673 - 0.539469
glnE b3053 fused deadenylyltransferase/adenylyltransferase for glutamine synthetasechromosome CDS3194823 2841 - 0.559662
gntY b3414 predicted gluconate transport associated proteinchromosome CDS3543646 576 + 0.532986
groL b4143 chaperonin GroELchromosome CDS4369048 1647 + 0.52884
groS b4142 co-chaperonin GroESchromosome CDS4368711 294 + 0.486395
grpE b2614 heat shock proteinchromosome CDS2748137 594 - 0.503367
grxA b0849 glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a)chromosome CDS889719 258 - 0.449612
grxB b1064 glutaredoxin 2 (Grx2)chromosome CDS1122630 648 - 0.490741
grxC b3610 glutaredoxin 3chromosome CDS3782214 252 - 0.52381
gspO b3335 bifunctional prepilin leader peptidase/ methylasechromosome CDS3463565 678 + 0.504425
gst b1635 glutathionine S-transferasechromosome CDS1712401 606 + 0.504951
hflC b4175 modulator for HflB protease specific for phage lambda cII repressorchromosome CDS4401323 1005 + 0.530348
hflK b4174 modulator for HflB protease specific for phage lambda cII repressorchromosome CDS4400061 1260 + 0.561905
hscA b2526 chaperone protein HscAchromosome CDS2655107 1851 - 0.576985
hscB b2527 co-chaperone HscBchromosome CDS2656974 516 - 0.523256
hscC b0650 Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcriptionchromosome CDS680946 1671 - 0.500299
hslJ b1379 heat-inducible proteinchromosome CDS1439345 423 - 0.468085
hslO b3401 Hsp33-like chaperoninchromosome CDS3527796 879 + 0.52901
hslU b3931 ATP-dependent protease ATP-binding subunitchromosome CDS4118439 1332 - 0.526276
hslV b3932 ATP-dependent protease peptidase subunitchromosome CDS4119780 531 - 0.527307
htpG b0473 heat shock protein 90chromosome CDS494344 1875 + 0.528533
htpX b1829 heat shock protein HtpXchromosome CDS1909719 882 - 0.535147
hyaE b0976 protein involved in processing of HyaA and HyaB proteinschromosome CDS1035577 399 + 0.566416
hybG b2990 hydrogenase 2 accessory proteinchromosome CDS3137738 249 - 0.522088
hypB b2727 GTP hydrolase involved in nickel liganding into hydrogenaseschromosome CDS2849023 873 + 0.552119
hypC b2728 protein required for maturation of hydrogenases 1 and 3chromosome CDS2849886 273 + 0.553114
hypD b2729 protein required for maturation of hydrogenaseschromosome CDS2850158 1122 + 0.554367
hypE b2730 carbamoyl phosphate phosphatase, hydrogenase 3 maturation proteinchromosome CDS2851318 969 + 0.570691
hypF b2712 carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenaseschromosome CDS2833195 2253 - 0.576121
ibpA b3687 heat shock chaperonechromosome CDS3865032 414 - 0.471014
ibpB b3686 heat shock chaperonechromosome CDS3864492 429 - 0.48951
lon b0439 DNA-binding ATP-dependent protease Lachromosome CDS458112 2355 + 0.523142
msrA b4219 methionine sulfoxide reductase Achromosome CDS4439561 639 - 0.544601
nrdG b4237 anaerobic ribonucleotide reductase activating proteinchromosome CDS4457923 465 - 0.509677
nrdH b2673 glutaredoxin-like proteinchromosome CDS2798745 246 + 0.53252
nrfE b4074 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfEchromosome CDS4289535 1659 + 0.573237
nrfF b4075 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfFchromosome CDS4291186 384 + 0.523438
nrfG b4076 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfGchromosome CDS4291566 597 + 0.517588
osmC b1482 osmotically inducible, stress-inducible membrane proteinchromosome CDS1554649 432 + 0.5
pcm b2743 protein-L-isoaspartate O-methyltransferasechromosome CDS2866915 627 - 0.53429
pflA b0902 pyruvate formate lyase activating enzyme 1chromosome CDS949563 741 - 0.503374
pflC b3952 pyruvate formate lyase II activasechromosome CDS4144281 879 + 0.549488
ppiA b3363 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS3489747 573 - 0.511344
ppiB b0525 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS553166 495 - 0.478788
ppiC b3775 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS3957555 282 - 0.51773
ppiD b0441 peptidyl-prolyl cis-trans isomerase (rotamase D)chromosome CDS461139 1872 + 0.523504
ptr b2821 protease IIIchromosome CDS2954018 2889 - 0.511596
radA b4389 predicted repair proteinchromosome CDS4623935 1383 + 0.577007
slyD b3349 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)chromosome CDS3475929 591 - 0.553299
smpB b2620 SsrA-binding proteinchromosome CDS2752918 483 + 0.517598
sohB b1272 predicted inner membrane peptidasechromosome CDS1327356 1050 + 0.505714
sppA b1766 protease IV (signal peptide peptidase)chromosome CDS1846861 1857 + 0.517501
sra b1480 30S ribosomal subunit protein S22chromosome CDS1553850 138 - 0.442029
sspA b3229 stringent starvation protein Achromosome CDS3374804 639 - 0.536776
sufB b1683 component of SufBCD complexchromosome CDS1760546 1488 - 0.515457
sufC b1682 cysteine desulfurase ATPase componentchromosome CDS1759790 747 - 0.504685
sufD b1681 component of SufBCD complexchromosome CDS1758544 1272 - 0.533019
surA b0053 peptidyl-prolyl cis-trans isomerase (PPIase)chromosome CDS53416 1287 - 0.538462
tig b0436 trigger factorchromosome CDS454357 1299 + 0.511932
tpx b1324 thiol peroxidasechromosome CDS1386329 507 - 0.512821
trxA b3781 thioredoxinchromosome CDS3963784 330 + 0.509091
trxB b0888 thioredoxin reductase, FAD/NAD(P)-bindingchromosome CDS930308 966 - 0.536232
trxC b2582 thioredoxin 2chromosome CDS2716757 420 + 0.495238
yagQ b0283 hypothetical proteinchromosome CDS296994 957 - 0.599791
ybbJ b0488 conserved inner membrane proteinchromosome CDS513625 456 - 0.574561
ybbK b0489 predicted protease, membrane anchoredchromosome CDS514080 918 - 0.528322
ybbN b0492 predicted thioredoxin domain-containing proteinchromosome CDS516649 855 - 0.559064
ybfN b0682 predicted lipoproteinchromosome CDS709013 327 + 0.480122
ybiY b0824 predicted pyruvate formate lyase activating enzymechromosome CDS861835 927 - 0.537217
ycaL b0909 predicted peptidase with chaperone functionchromosome CDS959487 765 + 0.499346
ycbZ b0955 predicted peptidasechromosome CDS1015762 1761 - 0.517888
ydcP b1435 predicted peptidasechromosome CDS1504805 1962 + 0.510703
ydfT b1559 Qin prophage; predicted antitermination protein Qchromosome CDS1640513 753 - 0.479416
ydhD b1654 hypothetical proteinchromosome CDS1731778 348 - 0.525862
ydhH b1640 anhydro-N-acetylmuramic acid kinasechromosome CDS1716517 1110 - 0.545946
yeaA b1778 methionine sulfoxide reductase Bchromosome CDS1860040 414 - 0.485507
yeaZ b1807 predicted peptidasechromosome CDS1888596 696 - 0.556035
yedF b1930 hypothetical proteinchromosome CDS2007503 234 + 0.482906
yeeD b2012 hypothetical proteinchromosome CDS2082250 228 - 0.504386
yegD b2069 predicted chaperonechromosome CDS2145698 1353 + 0.560976
yegQ b2081 predicted peptidasechromosome CDS2163692 1362 + 0.541116
yegU b2099 predicted hydrolasechromosome CDS2178117 1005 + 0.556219
yfcF b2301 predicted enzymechromosome CDS2417863 645 - 0.516279
yfcG b2302 predicted glutathione S-transferasechromosome CDS2418643 648 + 0.513889
yfjH b2623 CP4-57 prophage; predicted proteinchromosome CDS2755666 957 - 0.367816
ygcF b2777 hypothetical proteinchromosome CDS2902769 672 - 0.516369
yggG b2936 predicted peptidasechromosome CDS3079935 759 + 0.515152
yggX b2962 hypothetical proteinchromosome CDS3102115 276 + 0.474638
yghU b2989 predicted S-transferasechromosome CDS3136749 867 + 0.534025
ygjD b3064 O-sialoglycoprotein endopeptidasechromosome CDS3207552 1014 - 0.576923
yhbU b3158 predicted peptidase (collagenase-like)chromosome CDS3299507 996 + 0.568273
yhbV b3159 predicted proteasechromosome CDS3300511 879 + 0.559727
yhfA b3356 hypothetical proteinchromosome CDS3483436 405 - 0.516049
yhhP b3470 cell developmental protein SirAchromosome CDS3606774 246 - 0.536585
yibF b3592 predicted glutathione S-transferasechromosome CDS3759370 609 - 0.527094
yifB b3765 predicted bifunctional enzyme and transcriptional regulatorchromosome CDS3946472 1551 - 0.508059
yjjW b4379 predicted pyruvate formate lyase activating enzymechromosome CDS4612703 864 - 0.563657
yliJ b0838 predicted glutathione S-transferasechromosome CDS879077 627 - 0.519936
yncG b1454 predicted enzymechromosome CDS1524271 618 + 0.47411
yqjG b3102 predicted S-transferasechromosome CDS3249046 987 + 0.511651
 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z2372 unknown protein encoded within prophage CP-933Rchromosome CDS2141118 372 - 0.47043
NA Z2565 putative chaperone proteinchromosome CDS2274910 591 - 0.392555
NA Z1426 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1332590 312 - 0.432692
NA Z4343 hypothetical proteinchromosome CDS3946346 915 + 0.539891
NA Z2134 putative head-tail preconnector protein of prophage CP-933Ochromosome CDS1912872 1506 + 0.604914
NA Z2979 putative stability/partitioning protein encoded within prophage CP-933Tchromosome CDS2677512 960 + 0.547917
NA Z1886 putative capsid protein of prophage CP-933Xchromosome CDS1718285 1320 + 0.607576
NA Z2654 hypothetical proteinchromosome CDS2393413 1110 - 0.54955
NA Z2086 similar to division inhibition protein DicB within CP-933Ochromosome CDS1880857 294 - 0.411565
NA Z2361 putative capsid assembly protein of prophage CP-933Rchromosome CDS2132439 1506 - 0.604914
NA Z3932 putative antiterminator of prophage CP-933Ychromosome CDS3555085 624 - 0.508013
NA Z2112 putative ClpP-like protease encoded within prophage CP-933Ochromosome CDS1897625 798 - 0.526316
NA Z3391 putative glutathione-S-transferasechromosome CDS3031951 648 - 0.541667
NA Z2265 putative transferasechromosome CDS2045844 618 - 0.472492
NA Z3262 hypothetical proteinchromosome CDS2923847 1005 + 0.556219
NA Z4042 hypothetical proteinchromosome CDS3647865 135 - 0.451852
NA Z1305 putative ATP-dependent proteasechromosome CDS1235233 1761 - 0.519591
NA Z1495 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1379853 8421 + 0.542572
NA Z1345 antitermination protein Q homolog of cryptic prophage CP-933Mchromosome CDS1265949 822 + 0.478102
NA Z0254 putative proteasechromosome CDS251126 2772 - 0.597763
NA Z2542 hypothetical proteinchromosome CDS2259827 1584 - 0.469066
NA Z6052 unknown protein encoded by cryptic prophage CP-933Pchromosome CDS2311828 348 - 0.474138
NA Z0967 putative protease encoded in prophage CP-933Kchromosome CDS909701 2028 + 0.5143
NA Z3097 putative peptidase encoded within prophage CP-933Uchromosome CDS2762762 960 - 0.526042
EHEC-hlyC L7047 hemolysin transport proteinpO157 CDS39305 516 + 0.348837
aat Z1229 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1147028 705 - 0.53617
ahpC Z0749 alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxideschromosome CDS720197 564 + 0.5
ahpF Z0750 alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxideschromosome CDS720859 1596 + 0.525063
bcp Z3739 bacterioferritin comigratory proteinchromosome CDS3386407 471 + 0.496815
btuE Z2739 vitamin B12 transportchromosome CDS2468473 552 - 0.490942
cbpA Z1418 curved DNA-binding protein; functions closely related to DnaJchromosome CDS1326027 921 - 0.53203
ccmA Z3458 ATP binding protein of heme exporter Achromosome CDS3101843 618 - 0.55178
ccmB Z3457 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS3101184 663 - 0.553545
ccmC Z3456 heme exporter protein Cchromosome CDS3100405 738 - 0.552846
ccmE Z3454 cytochrome c biogenesis, possible subunit of a heme lyasechromosome CDS3099723 480 - 0.539583
ccmF Z3453 cytochrome c-type biogenesis proteinchromosome CDS3097783 1944 - 0.570988
ccmH Z3451 possible subunit of heme lyasechromosome CDS3096180 1053 - 0.537512
clpA Z1119 ATP-binding component of serine proteasechromosome CDS1055999 2277 + 0.526131
clpB Z3886 heat shock proteinchromosome CDS3521568 2586 - 0.514308
clpP Z0542 ATP-dependent Clp protease proteolytic subunitchromosome CDS522731 624 + 0.503205
clpX Z0543 ATP-dependent protease ATP-binding subunitchromosome CDS523480 1275 + 0.516863
csgA Z1676 curlin major subunit, coiled surface structures; crypticchromosome CDS1548672 459 + 0.503268
cydC Z1230 ATP-binding component of cytochrome-related transportchromosome CDS1147774 1722 - 0.538328
cydD Z1231 ATP-binding component of cytochrome-related transport, Zn sensitivechromosome CDS1149496 1767 - 0.532541
cyoE Z0531 protoheme IX farnesyltransferasechromosome CDS512870 891 - 0.535354
cysU Z3689 sulfate, thiosulfate transport system permease T proteinchromosome CDS3334944 834 - 0.55036
degQ Z4593 serine endoproteasechromosome CDS4183196 1368 + 0.521199
degS Z4594 proteasechromosome CDS4184653 1068 + 0.526217
djlA Z0064 Dna-J like membrane chaperone proteinchromosome CDS62340 816 + 0.528186
dnaJ Z0015 chaperone with DnaK; heat shock proteinchromosome CDS14185 1131 + 0.55084
dnaK Z0014 molecular chaperone DnaKchromosome CDS12180 1917 + 0.513824
dsbA Z5392 protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reductionchromosome CDS4908134 627 + 0.478469
dsbB Z1948 disulfide bond formation protein Bchromosome CDS1765393 531 - 0.52354
dsbC Z4231 protein disulfide isomerase IIchromosome CDS3843569 711 - 0.481013
dsbD Z5741 thiol:disulfide interchange protein precursorchromosome CDS5247781 1698 - 0.542403
dsbE Z3452 disulfide oxidoreductase (in biogenesis of cytochrome c?chromosome CDS3097229 558 - 0.544803
dsbG Z0748 thiol:disulfide interchange proteinchromosome CDS719079 807 - 0.462206
fdhE Z5433 formate dehydrogenase accessory protein FdhEchromosome CDS4947699 930 - 0.552688
fklB Z5818 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS5314236 780 + 0.525641
fkpA Z4705 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4263735 813 - 0.483395
flgA Z1710 flagellar basal body P-ring biosynthesis proteinchromosome CDS1574434 660 - 0.522727
flgJ Z1719 flagellar biosynthesis proteinchromosome CDS1581564 942 + 0.547771
flgN Z1708 protein of flagellar biosynthesischromosome CDS1573644 417 - 0.479616
fliJ Z3032 flagellar proteinchromosome CDS2717704 444 + 0.529279
fliS Z3015 flagellar protein FliSchromosome CDS2703036 411 + 0.491484
glnD Z0177 PII uridylyl-transferasechromosome CDS189465 2673 - 0.531612
glnE Z4406 adenylylating enzyme for glutamine synthetasechromosome CDS4003644 2841 - 0.560366
groEL Z5748 chaperonin GroELchromosome CDS5255461 1647 + 0.534305
groES Z5747 co-chaperonin GroESchromosome CDS5255124 294 + 0.489796
grpE Z3907 phage lambda replication; host DNA synthesis; heat shock protein; protein repairchromosome CDS3539973 594 - 0.501683
grxA Z1076 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS1017442 258 - 0.457364
grxB Z1701 glutaredoxin 2chromosome CDS1567637 648 - 0.489198
grxC Z5037 glutaredoxin 3chromosome CDS4600005 252 - 0.511905
gst Z2647 glutathionine S-transferasechromosome CDS2389296 606 + 0.50165
hflB Z4540 degrades sigma32, integral membrane peptidase, cell division proteinchromosome CDS4134715 1935 - 0.536951
hflC Z5782 protease specific for phage lambda cII repressorchromosome CDS5287011 1005 + 0.533333
hflK Z5781 protease specific for phage lambda cII repressorchromosome CDS5285749 1260 + 0.55873
hopD Z4693 putative leader peptidasechromosome CDS4255883 468 + 0.478632
hscA Z3793 chaperone protein HscAchromosome CDS3447577 1851 - 0.576445
hscB Z3794 co-chaperone HscBchromosome CDS3449444 516 - 0.515504
hslJ Z2330 heat shock protein hslJchromosome CDS2109236 423 + 0.470449
hslO Z4755 Hsp33-like chaperoninchromosome CDS4309184 885 + 0.527684
hslU Z5478 ATP-dependent protease ATP-binding subunitchromosome CDS4990672 1332 - 0.524775
hslV Z5479 ATP-dependent protease peptidase subunitchromosome CDS4992013 531 - 0.516008
htpG Z0590 heat shock protein 90chromosome CDS561018 1875 + 0.526933
htpX Z2876 heat shock protein HtpXchromosome CDS2588732 882 - 0.53288
htrA Z0173 periplasmic serine protease Do; heat shock protein HtrAchromosome CDS185084 1425 + 0.538246
hyaE Z1393 processing of HyaA and HyaB proteinschromosome CDS1300291 399 + 0.556391
hybG Z4344 hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2chromosome CDS3947383 249 - 0.53012
hypB Z4036 guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3chromosome CDS3641983 873 + 0.550974
hypC Z4037 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS3642846 273 + 0.553114
hypD Z4038 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS3643118 1122 + 0.560606
hypE Z4039 plays structural role in maturation of all 3 hydrogenasechromosome CDS3644278 969 + 0.573787
hypF Z4020 transcriptional regulatory proteinchromosome CDS3626190 2253 - 0.575233
ibpA Z5183 heat shock proteinchromosome CDS4726976 414 - 0.468599
ibpB Z5182 heat shock proteinchromosome CDS4726436 435 - 0.485057
lon Z0545 DNA-binding, ATP-dependent protease La; heat shock K-proteinchromosome CDS524897 2400 + 0.519583
msrA Z5830 methionine sulfoxide reductase Achromosome CDS5327004 639 - 0.538341
nrdG Z5847 anaerobic ribonucleotide reductase activating proteinchromosome CDS5345392 465 - 0.507527
nrdH Z3975 glutaredoxin-like protein; hydrogen donorchromosome CDS3592163 246 + 0.53252
nrfE Z5673 formate-dependent nitrite reductase; possible assembly functionchromosome CDS5174646 1659 + 0.566606
nrfF Z5674 part of formate-dependent nitrite reductase complexchromosome CDS5176297 384 + 0.523438
nrfG Z5675 part of formate-dependent nitrite reductase complexchromosome CDS5176677 597 + 0.520938
osmC Z2228 osmotically inducible proteinchromosome CDS2010173 432 - 0.5
pcm Z4051 protein-L-isoaspartate O-methyltransferasechromosome CDS3656714 627 - 0.54067
pflA Z1246 pyruvate formate lyase activating enzyme 1chromosome CDS1169206 741 - 0.495277
pflC Z5508 probable pyruvate formate lyase activating enzyme 2chromosome CDS5021906 879 + 0.551763
ppiA Z4724 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS4278853 573 - 0.511344
ppiB Z0680 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS646089 495 - 0.478788
ppiC Z5286 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS4821922 282 - 0.510638
ptr Z4138 protease IIIchromosome CDS3745694 2889 - 0.507442
rpsV Z2230 30S ribosomal subunit protein S22chromosome CDS2011267 138 + 0.449275
sepQ Z5116 sepQchromosome CDS4673008 918 - 0.374728
slpA Z0033 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS30201 450 + 0.553333
slyD Z4707 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4265035 591 - 0.554992
smpB Z3913 SsrA-binding proteinchromosome CDS3544754 483 + 0.505176
sms Z5990 probable ATP-dependent proteasechromosome CDS5512705 1383 + 0.57556
sohB Z2538 putative proteasechromosome CDS2256088 1050 - 0.504762
sppA Z2799 protease IV, a signal peptide peptidasechromosome CDS2523552 1857 + 0.519655
sspA Z4587 stringent starvation protein Achromosome CDS4179235 639 - 0.535211
surA Z0062 survival proteinchromosome CDS58392 1287 - 0.537685
tig Z0541 trigger factorchromosome CDS521188 1299 + 0.510393
tpx Z2452 thiol peroxidasechromosome CDS2190542 507 + 0.514793
trxA Z5291 thioredoxinchromosome CDS4828098 384 + 0.5
trxB Z1232 thioredoxin reductasechromosome CDS1151385 966 - 0.532091
trxC Z3867 putative thioredoxin-like proteinchromosome CDS3508771 420 + 0.495238
ureD Z1142 putative urease accessory protein Dchromosome CDS1078653 699 + 0.537911
ureD_2 Z1581 putative urease accessory protein Dchromosome CDS1474260 699 + 0.537911
ureE Z1146 putative urease accessory protein Echromosome CDS1081779 465 + 0.548387
ureE_2 Z1585 putative urease accessory protein Echromosome CDS1477386 465 + 0.548387
ureF Z1147 putative urease accessory protein Fchromosome CDS1082244 675 + 0.591111
ureF_2 Z1586 putative urease accessory protein Fchromosome CDS1477851 675 + 0.591111
ureG Z1148 putative urease accessory protein Gchromosome CDS1082930 618 + 0.537217
ureG_2 Z1587 putative urease accessory protein Gchromosome CDS1478537 618 + 0.537217
yagQ Z0349 hypothetical proteinchromosome CDS330179 957 - 0.599791
ybaU Z0548 putative protease maturation proteinchromosome CDS527969 1872 + 0.519765
ybbJ Z0641 hypothetical proteinchromosome CDS607892 459 - 0.579521
ybbK Z0642 putative proteasechromosome CDS608347 918 - 0.527233
ybbN Z0645 putative thioredoxin-like proteinchromosome CDS610916 891 - 0.554433
ybeS Z0795 putative enzyme of polynucleotide modificationchromosome CDS758556 1428 + 0.471289
ybeW Z0800 putative dnaK proteinchromosome CDS762864 1671 - 0.501496
ybfN Z0830 hypothetical proteinchromosome CDS789595 327 + 0.495413
ybiY Z1047 putative pyruvate formate-lyase 2 activating enzymechromosome CDS988501 900 - 0.545556
ycaL Z1255 putative heat shock proteinchromosome CDS1179106 789 + 0.496831
ydcP Z2284 putative collagenasechromosome CDS2063968 2004 - 0.506487
ydhD Z2676 hypothetical proteinchromosome CDS2408674 348 - 0.525862
yeaA Z2817 methionine sulfoxide reductase Bchromosome CDS2538821 414 - 0.480676
yeaZ Z2850 hypothetical proteinchromosome CDS2567605 696 - 0.550287
yedF Z3020 hypothetical proteinchromosome CDS2707212 234 + 0.482906
yeeD Z3174 hypothetical proteinchromosome CDS2826946 228 - 0.517544
yegD Z3238 putative heat shock proteinchromosome CDS2893668 1416 + 0.559322
yegQ Z3250 hypothetical proteinchromosome CDS2911321 1362 + 0.539648
yfcF Z3563 hypothetical proteinchromosome CDS3215967 645 - 0.503876
yfcG Z3564 putative S-transferasechromosome CDS3216747 648 + 0.518519
ygcF Z4089 hypothetical proteinchromosome CDS3691853 672 - 0.513393
yggG Z4280 hypothetical proteinchromosome CDS3889706 885 + 0.514124
yggX Z4307 hypothetical proteinchromosome CDS3912999 276 + 0.471014
ygjD Z4417 putative O-sialoglycoprotein endopeptidasechromosome CDS4016376 1014 - 0.572978
yhaB Z4472 hypothetical proteinchromosome CDS4074678 561 + 0.356506
yhbU Z4519 putative collagenasechromosome CDS4111199 996 + 0.573293
yhbV Z4520 hypothetical proteinchromosome CDS4112185 897 + 0.556299
yhfA Z4717 hypothetical proteinchromosome CDS4272542 405 - 0.51358
yhgI Z4769 hypothetical proteinchromosome CDS4325019 576 + 0.524306
yhhP Z4844 hypothetical proteinchromosome CDS4395222 246 - 0.520325
yibF Z5013 putative S-transferasechromosome CDS4571276 609 - 0.525452
yifB Z5277 putative 2-component regulatorchromosome CDS4810874 1551 - 0.506125
yiiF Z5432 hypothetical proteinchromosome CDS4947127 243 + 0.444444
yjjW Z5981 putative activating enzymechromosome CDS5502516 864 - 0.559028
yliJ Z1064 putative transferasechromosome CDS1006800 633 - 0.516588
ynhC Z2709 hypothetical proteinchromosome CDS2435427 1272 - 0.532233
ynhD Z2710 putative ATP-binding component of a transport systemchromosome CDS2436673 747 - 0.500669
ynhE Z2711 hypothetical proteinchromosome CDS2437429 1527 - 0.518009
yqjG Z4456 putative transferasechromosome CDS4057872 987 + 0.504559
 
Escherichia coli O157:H7 str. Sakai, Sakai
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECs3536 glutaredoxin-like proteinchromosome CDS3524873 246 + 0.53252
NA ECs2902 hypothetical proteinchromosome CDS2853628 1005 + 0.556219
NA ECs5214 anaerobic ribonucleotide reductase activating proteinchromosome CDS5315406 465 - 0.507527
NA ECs2363 hypothetical proteinchromosome CDS2333480 348 - 0.525862
NA ECs5057 NrfFchromosome CDS5146312 384 + 0.523438
NA ECs3838 hypothetical proteinchromosome CDS3845687 276 + 0.471014
NA ECs1172 hypothetical proteinchromosome CDS1251496 192 - 0.46875
NA ECs0992 putative heat shock proteinchromosome CDS1089883 789 + 0.496831
NA ECs0973 thioredoxin reductasechromosome CDS1062162 966 - 0.532091
NA ECs4488 glutaredoxin 3chromosome CDS4531023 252 - 0.511905
NA ECs3185 hypothetical proteinchromosome CDS3146012 645 - 0.503876
NA ECs4200 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4197813 591 - 0.554992
NA ECs0313 hypothetical proteinchromosome CDS330178 957 - 0.599791
NA ECs0968 ATP-binding component of serine proteasechromosome CDS1054339 2277 + 0.526131
NA ECs2814 hypothetical proteinchromosome CDS2756733 228 - 0.517544
NA ECs0929 glutaredoxin 1chromosome CDS1015783 258 - 0.457364
NA ECs2058 putative transferasechromosome CDS2042012 618 + 0.472492
NA ECs3811 hypothetical proteinchromosome CDS3822524 759 + 0.516469
NA ECs1326 UreFchromosome CDS1394079 675 + 0.591111
NA ECs2388 hypothetical proteinchromosome CDS2360231 1272 - 0.532233
NA ECs3448 putative thioredoxin-like proteinchromosome CDS3438933 420 + 0.495238
NA ECs3455 heat shock proteinchromosome CDS3451719 2574 - 0.514374
NA ECs0526 heat shock protein 90chromosome CDS561015 1875 + 0.527467
NA ECs0058 survival proteinchromosome CDS58391 1287 - 0.537685
NA ECs3088 heme exporter protein Cchromosome CDS3029136 738 - 0.554201
NA ECs3089 heme exporter protein Bchromosome CDS3029915 663 - 0.555053
NA ECs2516 hypothetical proteinchromosome CDS2492401 696 - 0.550287
NA ECs4949 hypothetical proteinchromosome CDS5045650 282 + 0.535461
NA ECs0552 putative proteasechromosome CDS608653 918 - 0.527233
NA ECs1321 UreDchromosome CDS1390443 744 + 0.534946
NA ECs0645 alkyl hydroperoxide reductase F52a subunitchromosome CDS721077 1596 + 0.525063
NA ECs2539 heat shock protein HtpXchromosome CDS2513525 882 - 0.53288
NA ECs4000 hypothetical proteinchromosome CDS4007462 561 + 0.358289
NA ECs4469 putative S-transferasechromosome CDS4504047 609 - 0.525452
NA ECs2187 hypothetical proteinchromosome CDS2185582 345 - 0.472464
NA ECs4816 hypothetical proteinchromosome CDS4878363 243 + 0.444444
NA ECs0972 ATP-binding component of cytochrome-related transportchromosome CDS1060273 1767 - 0.533673
NA ECs5347 putative ATP-dependent proteasechromosome CDS5482710 1383 + 0.576283
NA ECs4881 putative pyruvate formate lyase activating enzyme 2chromosome CDS4953179 840 + 0.552381
NA ECs5056 NrfEchromosome CDS5144661 1659 + 0.567209
NA ECs2039 putative collagenasechromosome CDS2022502 2004 + 0.506986
NA ECs4319 hypothetical proteinchromosome CDS4327998 246 - 0.520325
NA ECs1108 putative head-tail preconnector proteinchromosome CDS1193749 1506 + 0.604914
NA ECs4107 serine endoproteasechromosome CDS4115979 1368 + 0.52193
NA ECs1162 hypothetical proteinchromosome CDS1247773 312 - 0.432692
NA ECs3875 HybGchromosome CDS3880070 249 - 0.53012
NA ECs3476 GrpEchromosome CDS3470124 594 - 0.501683
NA ECs4858 ATP-dependent protease ATP-binding subunitchromosome CDS4921908 1332 - 0.524775
NA ECs1420 CsgAchromosome CDS1463586 459 + 0.503268
NA ECs3874 hypothetical proteinchromosome CDS3879081 867 + 0.542099
NA ECs0492 ATP-dependent protease ATP-binding subunitchromosome CDS523478 1275 + 0.516863
NA ECs2960 putative protease/scaffold proteinchromosome CDS2913472 1107 - 0.531165
NA ECs5337 putative activating enzymechromosome CDS5472523 864 - 0.560185
NA ECs4188 HopDchromosome CDS4188661 468 + 0.478632
NA ECs4709 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4752937 282 - 0.510638
NA ECs4817 formate dehydrogenase accessory protein FdhEchromosome CDS4878935 930 - 0.552688
NA ECs1155 curved DNA-binding proteinchromosome CDS1241210 921 - 0.53203
NA ECs3718 EprIchromosome CDS3720287 240 - 0.391667
NA ECs4108 proteasechromosome CDS4117436 1068 + 0.527154
NA ECs3084 DsbEchromosome CDS3025960 558 - 0.544803
NA ECs1459 flagellar biosynthesis proteinchromosome CDS1496478 942 + 0.547771
NA ECs0493 endopeptidase Lachromosome CDS524940 2355 + 0.521868
NA ECs3295 sulfate transport system permease T proteinchromosome CDS3265110 834 - 0.551559
NA ECs1633 minor capsid proteinchromosome CDS1634310 1320 + 0.607576
NA ECs2344 glutathionine S-transferasechromosome CDS2314104 606 + 0.50165
NA ECs1448 FlgNchromosome CDS1488558 417 - 0.479616
NA ECs0902 putative pyruvate formate-lyase 2 activating enzymechromosome CDS986843 900 - 0.546667
NA ECs3947 putative O-sialoglycoprotein endopeptidasechromosome CDS3949061 1014 - 0.572978
NA ECs2260 hypothetical proteinchromosome CDS2236545 345 - 0.478261
NA ECs0015 DnaJchromosome CDS14185 1131 + 0.55084
NA ECs3028 putative glutathione-S-transferasechromosome CDS2960685 648 - 0.541667
NA ECs3090 ATP binding protein of heme exporter Achromosome CDS3030574 618 - 0.55178
NA ECs3765 protein disulfide isomerase IIchromosome CDS3776261 711 - 0.482419
NA ECs0684 hypothetical protein of polynucleotide modificationchromosome CDS758775 1428 + 0.471989
NA ECs1442 glutaredoxin 2chromosome CDS1482551 648 - 0.489198
NA ECs3085 cytochrome c-type biogenesis proteinchromosome CDS3026514 1944 - 0.572016
NA ECs4040 hypothetical proteinchromosome CDS4044969 897 + 0.557414
NA ECs2086 osmotically inducible proteinchromosome CDS2077868 432 + 0.5
NA ECs2417 vitamin B12 transportchromosome CDS2393272 552 - 0.490942
NA ECs2889 hypothetical proteinchromosome CDS2841103 1362 + 0.539648
NA ECs0918 putative transferasechromosome CDS1005142 627 - 0.516746
NA ECs3186 putative S-transferasechromosome CDS3146792 648 + 0.518519
NA ECs3501 putative antitermination proteinchromosome CDS3487762 624 - 0.508013
NA ECs1783 hypothetical proteinchromosome CDS1776921 345 + 0.478261
NA ECs0482 protoheme IX farnesyltransferasechromosome CDS512868 891 - 0.535354
NA ECs4700 putative 2-component regulatorchromosome CDS4741893 1551 - 0.506125
NA ECs2669 hypothetical proteinchromosome CDS2632000 234 + 0.482906
NA ECs4039 putative collagenasechromosome CDS4043983 996 + 0.573293
NA ECs4198 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4196513 813 - 0.484625
NA ECs3482 SsrA-binding proteinchromosome CDS3474905 483 + 0.507246
NA ECs2472 protease IVchromosome CDS2448349 1857 + 0.521271
NA ECs0643 thiol:disulfide interchange proteinchromosome CDS719297 801 - 0.463171
NA ECs3984 putative transferasechromosome CDS3990656 987 + 0.505572
NA ECs2389 putative ATP-binding component of a transport systemchromosome CDS2361477 747 - 0.500669
NA ECs0169 PII uridylyl-transferasechromosome CDS189464 2673 - 0.531612
NA ECs5058 NrfGchromosome CDS5146692 597 + 0.520938
NA ECs2742 hypothetical proteinchromosome CDS2692656 345 - 0.481159
NA ECs0985 pyruvate formate lyase activating enzyme 1chromosome CDS1079983 741 - 0.495277
NA ECs2664 flagellar protein FliSchromosome CDS2627824 411 + 0.493917
NA ECs3086 CcmEchromosome CDS3028454 480 - 0.539583
NA ECs2878 putative heat shock proteinchromosome CDS2823515 1353 + 0.560976
NA ECs1450 flagellar basal body P-ring biosynthesis proteinchromosome CDS1489348 660 - 0.522727
NA ECs2390 hypothetical proteinchromosome CDS2362233 1488 - 0.518145
NA ECs0689 putative DnaKchromosome CDS763083 1671 - 0.501496
NA ECs4626 IbpBchromosome CDS4657453 435 - 0.485057
NA ECs1844 putative proteasechromosome CDS1830039 1050 + 0.504762
NA ECs4256 hypothetical proteinchromosome CDS4257797 576 + 0.524306
NA ECs5150 protease specific for phage lambda cII repressorchromosome CDS5255764 1260 + 0.55873
NA ECs3583 HypBchromosome CDS3574685 873 + 0.552119
NA ECs2487 methionine sulfoxide reductase Bchromosome CDS2463618 414 - 0.480676
NA ECs1680 disulfide bond formation protein Bchromosome CDS1673986 531 - 0.52354
NA ECs3568 transcriptional regulatory proteinchromosome CDS3558892 2253 - 0.576121
NA ECs4859 ATP-dependent protease peptidase subunitchromosome CDS4923249 531 - 0.516008
NA ECs4565 SepQchromosome CDS4604025 918 - 0.374728
NA ECs4057 FtsHchromosome CDS4067499 1935 - 0.536951
NA ECs0713 hypothetical proteinchromosome CDS789814 327 + 0.495413
NA ECs2176 putative minor capsid protein precursorchromosome CDS2176525 1320 - 0.607576
NA ECs0223 putative ATP-dependent Clp proteinase ATP-binding chainchromosome CDS251125 2772 - 0.597763
NA ECs0551 hypothetical proteinchromosome CDS608198 456 - 0.58114
NA ECs1825 bfpT-regulated chaperone-like proteinchromosome CDS1811677 591 + 0.392555
NA ECs3678 protease IIIchromosome CDS3678396 2889 - 0.507788
NA ECs1242 hypothetical proteinchromosome CDS1295881 8382 + 0.542949
NA ECs0555 putative thioredoxin-like proteinchromosome CDS611222 855 - 0.560234
NA ECs3936 glutamate-ammonia-ligase adenylyltransferasechromosome CDS3936329 2841 - 0.560366
NA ECs3597 protein-L-isoaspartate O-methyltransferasechromosome CDS3589416 627 - 0.54067
NA ECs0491 ATP-dependent Clp protease proteolytic subunitchromosome CDS522729 624 + 0.503205
NA ECs2349 hypothetical proteinchromosome CDS2318220 1110 - 0.54955
NA ECs4783 protein disulfide isomerase Ichromosome CDS4839370 627 + 0.478469
NA ECs1840 hypothetical proteinchromosome CDS1825766 1584 + 0.469066
NA ECs4207 hypothetical proteinchromosome CDS4205320 405 - 0.51358
NA ECs2681 flagellar proteinchromosome CDS2642492 444 + 0.529279
NA ECs1327 UreGchromosome CDS1394765 618 + 0.537217
NA ECs1325 UreEchromosome CDS1393614 465 + 0.548387
NA ECs1132 HyaEchromosome CDS1215474 399 + 0.558897
NA ECs2732 putative head-tail preconnector proteinchromosome CDS2683952 1506 - 0.604914
NA ECs0829 putative protease/scaffold proteinchromosome CDS907957 2124 + 0.514124
NA ECs3083 CcmH precursorchromosome CDS3024911 1053 - 0.538462
NA ECs4214 peptidyl-prolyl cis-trans isomerase Achromosome CDS4211631 573 - 0.511344
NA ECs4627 IbpAchromosome CDS4657993 414 - 0.468599
NA ECs0031 putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS30200 450 + 0.553333
NA ECs3585 HypDchromosome CDS3575820 1122 + 0.560606
NA ECs0971 ATP-binding component of cytochrome-related transportchromosome CDS1058551 1722 - 0.538328
NA ECs5185 FKBP-type 22KD peptidyl-prolyl cis-trans isomerasechromosome CDS5284409 621 + 0.555556
NA ECs3584 HypCchromosome CDS3575548 273 + 0.553114
NA ECs2001 HslJchromosome CDS1978823 423 - 0.470449
NA ECs0165 periplasmic serine protease Dochromosome CDS185083 1425 + 0.538246
NA ECs0495 putative protease maturation proteinchromosome CDS527967 1872 + 0.519765
NA ECs2634 putative plasmid partition proteinchromosome CDS2602301 960 + 0.547917
NA ECs1039 putative ATP-dependent proteasechromosome CDS1146010 1761 - 0.519591
NA ECs2084 30S ribosomal subunit protein S22chromosome CDS2077069 138 - 0.449275
NA ECs0587 peptidyl-prolyl cis-trans isomerase Bchromosome CDS646395 495 - 0.478788
NA ECs5151 protease specific for phage lambda cII repressorchromosome CDS5257026 1005 + 0.533333
NA ECs3586 HypEchromosome CDS3576980 969 + 0.574819
NA ECs0644 alkyl hydroperoxide reductase C22 subunitchromosome CDS720415 564 + 0.5
NA ECs5197 methionine sulfoxide reductase Achromosome CDS5297018 639 - 0.538341
NA ECs1524 putative antitermination proteinchromosome CDS1553207 822 + 0.478102
NA ECs3633 hypothetical proteinchromosome CDS3624555 672 - 0.514881
aat ECs0970 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1057805 705 - 0.537589
bcp ECs3342 bacterioferritin comigratory proteinchromosome CDS3316573 471 + 0.496815
djlA ECs0060 Dna-J like membrane chaperone proteinchromosome CDS62339 816 + 0.528186
dnaK ECs0014 molecular chaperone DnaKchromosome CDS12180 1917 + 0.513824
dsbD ECs5117 thiol:disulfide interchange protein precursorchromosome CDS5217796 1698 - 0.542403
etpN pO157p13 EptNpO157 CDS12995 717 + 0.527197
groEL ECs5124 chaperonin GroELchromosome CDS5225476 1647 + 0.534305
groES ECs5123 co-chaperonin GroESchromosome CDS5225139 294 + 0.489796
hlyC pO157p17 hemolysin CpO157 CDS16119 492 + 0.349593
hscA ECs3392 chaperone protein HscAchromosome CDS3377740 1851 - 0.576985
hscB ECs3393 co-chaperone HscBchromosome CDS3379607 516 - 0.51938
hslO ECs4243 Hsp33-like chaperoninchromosome CDS4241962 885 + 0.527684
sspA ECs4102 stringent starvation protein Achromosome CDS4112018 639 - 0.535211
tig ECs0490 trigger factorchromosome CDS521186 1299 + 0.510393
tpx ECs1903 thiol peroxidasechromosome CDS1896119 507 - 0.514793
trxA ECs4714 thioredoxinchromosome CDS4759113 384 + 0.5
 
Escherichia coli UTI89, UTI89
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA UTI89_C3474 putative disulfide isomerasechromosome CDS3409619 669 + 0.446936
NA UTI89_C3475 putative disulfide isomerasechromosome CDS3410302 672 + 0.485119
NA UTI89_C0953 putative serine proteasechromosome CDS942252 825 - 0.513939
NA UTI89_C0948 prophage CP-933T putative stability/partitioning proteinchromosome CDS937348 960 - 0.544792
NA UTI89_C5120 putative protease/scaffold proteinchromosome CDS5011325 2124 + 0.515066
NA UTI89_C0242 hypothetical proteinchromosome CDS251029 2760 - 0.587681
NA UTI89_C0946 ATP-dependent specificity component of ClpP serine protease, chaperonechromosome CDS936636 333 - 0.438438
NA UTI89_C3322 putative SPFH domain containing serine proteasechromosome CDS3255282 909 + 0.493949
NA UTI89_P016 putative thioredoxin-family proteinpUTI89 CDS13136 486 + 0.580247
NA UTI89_C1500 putative capsid assembly protein of prophagechromosome CDS1414166 1506 + 0.605578
NA UTI89_C2373 hypothetical proteinchromosome CDS2320853 1005 + 0.550249
NA UTI89_C1020 putative protease La-like proteinchromosome CDS1013859 1761 - 0.516184
NA UTI89_C0827 putative pyruvate formate-lyase 3 activating enzymechromosome CDS823827 927 - 0.523193
NA UTI89_C1479 cryptic prophage CP-933M antitermination protein Q-like proteinchromosome CDS1402135 822 + 0.502433
NA UTI89_C2993 lambdoid prophage Qin antitermination protein Q-like proteinchromosome CDS2928398 783 - 0.473819
aat UTI89_C0900 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS897110 705 - 0.53617
ahpC UTI89_C0608 alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxideschromosome CDS622803 564 + 0.496454
ahpF UTI89_C0609 alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxideschromosome CDS623507 1596 + 0.524436
bcp UTI89_C2807 thiol peroxidasechromosome CDS2750075 471 + 0.492569
btuE UTI89_C1903 vitamin B12 transportchromosome CDS1829145 552 - 0.481884
cbpA UTI89_C1064 curved DNA-binding proteinchromosome CDS1051342 921 - 0.53203
ccmB UTI89_C2478 heme exporter protein Bchromosome CDS2433242 663 - 0.559578
ccmC UTI89_C2477 heme exporter protein Cchromosome CDS2432463 762 - 0.548556
ccmE UTI89_C2475 cytochrome c biogenesis, possible subunit of a heme lyasechromosome CDS2431781 480 - 0.539583
ccmF UTI89_C2474 cytochrome c-type biogenesis protein CcmFchromosome CDS2429841 1944 - 0.569444
ccmG UTI89_C2473 disulfide oxidoreductasechromosome CDS2429287 558 - 0.553763
ccmH UTI89_C2472 cytochrome c-type biogenesis protein CcmH precursorchromosome CDS2428238 1053 - 0.54321
clpA UTI89_C0888 ATP-dependent clp protease ATP-binding subunit clpAchromosome CDS884034 2292 + 0.529668
clpB UTI89_C2925 heat shock proteinchromosome CDS2875801 2586 - 0.513148
clpP UTI89_C0465 ATP-dependent proteolytic subunit of clpA-ClpP serine protease, heat shock protein F21.5chromosome CDS470795 624 + 0.501603
clpX UTI89_C0466 ATP-dependent specificity component of ClpP serine protease, chaperonechromosome CDS471544 1275 + 0.519216
degP UTI89_C0177 periplasmic serine protease DegPchromosome CDS186705 1425 + 0.537544
degQ UTI89_C3665 serine endoprotease DegQ precursorchromosome CDS3590368 1410 + 0.51773
degS UTI89_C3666 inner membrane serine protease DegS precursorchromosome CDS3591867 1068 + 0.523408
djlA UTI89_C0062 DnaJ-like protein DjlAchromosome CDS60469 909 + 0.518152
dnaJ UTI89_C0017 chaperone with DnaK; heat shock proteinchromosome CDS14219 1131 + 0.548187
dnaK UTI89_C0016 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteinschromosome CDS12214 1917 + 0.511215
dsbA UTI89_C4447 disulfide oxidoreductasechromosome CDS4329575 627 + 0.480064
dsbB UTI89_C1371 disulfide bond formation protein Bchromosome CDS1305251 537 - 0.523277
dsbC UTI89_C3278 thiol:disulfide interchange protein DsbC precursorchromosome CDS3216778 711 - 0.481013
dsbD UTI89_C4733 thiol:disulfide interchange protein DsbD precursorchromosome CDS4635457 1698 - 0.536514
dsbG UTI89_C0607 thiol:disulfide interchange protein DsbG precursorchromosome CDS621685 807 - 0.460967
fdhE UTI89_C4478 formate dehydrogenase-N activity influencing protein fdhEchromosome CDS4361145 930 - 0.547312
fklB UTI89_C4816 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS4710322 780 + 0.530769
fkpA UTI89_C3849 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3734612 813 - 0.483395
fliS UTI89_C2126 flagellar protein FliSchromosome CDS2029310 411 + 0.481752
glnD UTI89_C0181 [protein-PII] uridylyltransferasechromosome CDS191044 2673 - 0.536102
glnE UTI89_C3489 glutamate-ammonia-ligase adenylyltransferasechromosome CDS3424603 2952 - 0.554201
groEL UTI89_C4741 GroEL (chaperone Hsp60)chromosome CDS4643137 1647 + 0.530662
groES UTI89_C4740 GroES (10 Kd chaperone protein)chromosome CDS4642800 294 + 0.486395
grpE UTI89_C2947 GrpE proteinchromosome CDS2894203 594 - 0.501683
grxA UTI89_C0852 glutaredoxin 1chromosome CDS851691 273 - 0.457875
grxB UTI89_C1189 glutaredoxin 2chromosome CDS1168375 648 - 0.489198
grxC UTI89_C4152 glutaredoxin 3chromosome CDS4045907 252 - 0.496032
gst UTI89_C1826 glutathione S-transferasechromosome CDS1754538 606 + 0.5
hflC UTI89_C4775 HflC protein regulator of FtsH protease, subunit of HflK-HflC complexchromosome CDS4675112 1005 + 0.523383
hflK UTI89_C4774 HflK protein regulator of FtsH protease, subunit of HflK-HflC complexchromosome CDS4673850 1260 + 0.562698
hlyC UTI89_C4927 hemolysin Cchromosome CDS4828108 645 - 0.344186
hscA UTI89_C2848 chaperone protein HscAchromosome CDS2804147 1905 - 0.573228
hscB UTI89_C2849 hsc20 molecular co-chaperonechromosome CDS2806014 516 - 0.517442
hslJ UTI89_C1622 heat shock protein HslJchromosome CDS1537566 435 - 0.475862
hslO UTI89_C3899 heat shock protein 33chromosome CDS3782436 885 + 0.526554
hslU UTI89_C4516 ATP-dependent hslVU protease ATP-binding subunit hslUchromosome CDS4397414 1332 - 0.522523
hslV UTI89_C4517 ATP-dependent hslVU protease peptidase subunit hslVchromosome CDS4398755 531 - 0.525424
htpG UTI89_C0501 chaperone Hsp90, heat shock protein C 62.5chromosome CDS509251 1875 + 0.528
htpX UTI89_C2030 probable protease (heat shock protein HtpX)chromosome CDS1938385 882 - 0.531746
hyaE UTI89_C1044 hydrogenase-1 operon protein HyaEchromosome CDS1033676 399 + 0.548872
hybG UTI89_C3412 hydrogenase-2 operon protein HybGchromosome CDS3350539 249 - 0.522088
hypB UTI89_C3090 hydrogenase isoenzymes nickel incorporation protein hypBchromosome CDS3010094 873 + 0.558992
hypC UTI89_C3091 hydrogenase isoenzymes formation protein HypCchromosome CDS3010957 273 + 0.542125
hypE UTI89_C3093 hydrogenase isoenzymes formation protein HypEchromosome CDS3012347 1011 + 0.576657
hypF UTI89_C3074 hydrogenase maturation protein HypFchromosome CDS2993663 2325 - 0.579355
ibpA UTI89_C4238 16 kDa heat shock protein Achromosome CDS4128576 420 - 0.466667
ibpB UTI89_C4237 16 kDa heat shock protein Bchromosome CDS4128036 435 - 0.485057
lon UTI89_C0467 DNA-binding, ATP-dependent protease La; heat shock K-proteinchromosome CDS472961 2400 + 0.52375
mrsC UTI89_C3610 ATP-binding proteinchromosome CDS3544831 1935 - 0.532817
msrA UTI89_C4827 methionine sulfoxide reductase A / protein-methionine-S-oxide reductase / methionine sulfoxide reductasechromosome CDS4721863 705 - 0.543262
msrB UTI89_C1974 methionine sulfoxide reductase B; protein-methionine-S-oxide reductasechromosome CDS1894264 444 - 0.47973
nrdG UTI89_C4841 NrdG subunit of ribonucleoside triphosphate reductase activasechromosome CDS4739746 465 - 0.513978
nrdH UTI89_C3033 glutaredoxin-like protein; hydrogen donorchromosome CDS2957452 246 + 0.544715
nrfE UTI89_C4664 formate-dependent nitrite reductase subunit nrfE; possible assembly functionchromosome CDS4560882 1683 + 0.568033
nrfF UTI89_C4665 formate-dependent nitrite reductase complex NrfF subunit precursorchromosome CDS4562557 384 + 0.513021
osmC UTI89_C1701 osmotically inducible protein OsmCchromosome CDS1623536 432 + 0.5
pcm UTI89_C3114 protein-L-isoaspartate O-methyltransferasechromosome CDS3031077 627 - 0.53429
pflA UTI89_C0973 pyruvate formate lyase activating enzyme 1chromosome CDS954846 768 - 0.501302
pflC UTI89_C4543 pyruvate formate-lyase 2 activating enzymechromosome CDS4430575 879 + 0.547213
ppiA UTI89_C3866 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS3749730 573 - 0.511344
ppiB UTI89_C0554 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS564961 495 - 0.480808
ppiC UTI89_C4331 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS4220303 282 - 0.510638
ptrA UTI89_C3222 protease III precursorchromosome CDS3146432 2889 - 0.50848
radA UTI89_C5160 DNA repair protein RadAchromosome CDS5049558 1431 + 0.575122
rpsV UTI89_C1698 30S ribosomal subunit protein S22chromosome CDS1622737 138 - 0.449275
scsC UTI89_P007 secreted copper-sensitivity suppressor CpUTI89 CDS4056 210 + 0.557143
scsD UTI89_P008 secreted copper-sensitivity suppressor DpUTI89 CDS4255 507 + 0.593688
sira UTI89_C3986 possible RNA-binding protein required for wild-type FtsZ ring formation on rich mediachromosome CDS3875240 246 - 0.51626
slpA UTI89_C0030 probable FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS27336 450 + 0.546667
slyD UTI89_C3851 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3735912 591 - 0.551607
smpB UTI89_C2954 SsrA-binding proteinchromosome CDS2898984 483 + 0.515528
sohB UTI89_C1540 possible protease SohBchromosome CDS1450279 1050 + 0.504762
sppA UTI89_C1962 protease IV, a signal peptide peptidasechromosome CDS1881084 1857 + 0.518578
sspA UTI89_C3658 stringent starvation protein Achromosome CDS3586448 639 - 0.536776
stbA UTI89_P062 stable plasmid inheritance proteinpUTI89 CDS53186 972 + 0.425926
sufB UTI89_C1875 component of SufB-SufC-SufD cysteine desulfurase (SufS) activator complexchromosome CDS1798281 1527 - 0.516699
surA UTI89_C0060 peptidyl-prolyl cis-trans isomerasechromosome CDS56614 1287 - 0.539239
tpx UTI89_C1595 thiol peroxidasechromosome CDS1507560 507 - 0.514793
trbB UTI89_P129 F pilus assembly periplasmic protein TrbBpUTI89 CDS95483 546 + 0.558608
trxA UTI89_C4335 thioredoxin 1chromosome CDS4225650 435 + 0.485057
trxB UTI89_C0903 thioredoxin reductasechromosome CDS901467 1086 - 0.516575
trxC UTI89_C2905 putative thioredoxin-like proteinchromosome CDS2860301 420 + 0.497619
ybaU UTI89_C0469 peptidyl-prolyl cis-trans isomerase Dchromosome CDS476033 1872 + 0.521368
ybbJ UTI89_C0523 hypothetical protein YbbJchromosome CDS532385 459 - 0.575163
ybbK UTI89_C0524 putative protease YbbKchromosome CDS532840 918 - 0.526144
ybbN UTI89_C0527 putative thioredoxin-like proteinchromosome CDS535409 891 - 0.553311
ycaL UTI89_C0980 putative metalloprotease YcaLchromosome CDS964762 774 + 0.488372
ydcP UTI89_C1654 putative protease YdcP precursorchromosome CDS1578262 2004 + 0.505988
ydhD UTI89_C1845 hypothetical proteinchromosome CDS1769527 348 - 0.522988
yeaZ UTI89_C2001 O-sialoglycoprotein endopeptidasechromosome CDS1917261 696 - 0.556035
yedF UTI89_C2131 hypothetical proteinchromosome CDS2033486 234 + 0.482906
yegD UTI89_C2345 hypothetical chaperone protein YegDchromosome CDS2285733 1416 + 0.555791
yegQ UTI89_C2360 hypothetical proteinchromosome CDS2308218 1362 + 0.544053
yfcF UTI89_C2585 hypothetical proteinchromosome CDS2551982 645 - 0.52093
yfcG UTI89_C2586 putative S-transferasechromosome CDS2552762 648 + 0.510802
yfgJ UTI89_C2831 hypothetical protein YfgJchromosome CDS2783118 216 - 0.453704
ygcF UTI89_C3140 hypothetical protein YgcFchromosome CDS3056612 672 - 0.520833
yggG UTI89_C3324 putative metalloprotease YggGchromosome CDS3258460 978 + 0.517382
yggX UTI89_C3353 hypothetical proteinchromosome CDS3281649 276 + 0.471014
yghU UTI89_C3411 hypothetical GST-like protein YghUchromosome CDS3349492 915 + 0.53224
ygjD UTI89_C3500 probable O-sialoglycoprotein endopeptidasechromosome CDS3437340 1014 - 0.564103
yhbU UTI89_C3585 putative protease YhbU precursorchromosome CDS3521293 1023 + 0.564027
yhbV UTI89_C3586 hypothetical protein YhbVchromosome CDS3522306 897 + 0.562988
yhfA UTI89_C3859 hypothetical proteinchromosome CDS3743419 405 - 0.516049
yhgI UTI89_C3915 hypothetical proteinchromosome CDS3798492 576 + 0.527778
yibF UTI89_C4134 putative S-transferasechromosome CDS4025266 609 - 0.525452
yifB UTI89_C4322 putative 2-component regulatorchromosome CDS4209317 1551 - 0.506125
yjjW UTI89_C5149 hypothetical protein YjjWchromosome CDS5038423 864 - 0.560185
yliJ UTI89_C0841 hypothetical GST-like protein YliJchromosome CDS841068 633 - 0.518167
yqeB UTI89_C3260 hypothetical protein YqeBchromosome CDS3191280 1626 - 0.5246
yqjG UTI89_C3540 putative transferasechromosome CDS3477555 987 + 0.516717
 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
aat leucyl/phenylalanyl-tRNA-protein transferasechromosome CDS927150 705 - 0.540426
ahpC alkyl hydroperoxide reductase, C22 subunitchromosome CDS638168 564 + 0.5
ahpF alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-bindingchromosome CDS638976 1566 + 0.53129
bcp thiol peroxidase, thioredoxin-dependentchromosome CDS2599134 471 + 0.494692
btuE predicted glutathione peroxidasechromosome CDS1795272 552 - 0.494565
cbpA curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaKchromosome CDS1063277 921 - 0.528773
ccmB heme exporter subunitchromosome CDS2299696 663 - 0.559578
ccmC heme exporter subunitchromosome CDS2298917 738 - 0.552846
ccmE periplasmic heme chaperonechromosome CDS2298235 480 - 0.535417
ccmF heme lyase, CcmF subunitchromosome CDS2296295 1944 - 0.570988
ccmG periplasmic thioredoxin of cytochrome c-type biogenesischromosome CDS2295741 558 - 0.544803
ccmH heme lyase, CcmH subunitchromosome CDS2294692 1053 - 0.540361
clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activitychromosome CDS923686 2277 + 0.526131
clpB protein disaggregation chaperonechromosome CDS2730256 2574 - 0.514374
clpP proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteaseschromosome CDS455901 624 + 0.511218
clpX ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine proteasechromosome CDS456650 1275 + 0.515294
csgA cryptic curlin major subunitchromosome CDS1104688 456 + 0.510965
cydC fused cysteine transporter subunits and membrane component and ATP-binding component of ABC superfamilychromosome CDS927896 1722 - 0.537747
cydD fused cysteine transporter subunits and membrane component and ATP-binding component of ABC superfamilychromosome CDS929618 1767 - 0.536503
cyoE protoheme IX farnesyltransferasechromosome CDS446039 891 - 0.537598
cysU sulfate/thiosulfate transporter subunitchromosome CDS2547125 834 - 0.56235
degP serine endoprotease (protease Do), membrane-associatedchromosome CDS180884 1425 + 0.539649
degQ serine endoprotease, periplasmicchromosome CDS3380598 1368 + 0.520468
degS serine endoprotease, periplasmicchromosome CDS3382055 1068 + 0.527154
dipZ fused thiol:disulfide interchange proteinchromosome CDS4368023 1698 - 0.54417
djlA DnaJ-like protein, membrane anchoredchromosome CDS57364 816 + 0.526961
djlB predicted chaperonechromosome CDS677837 1428 + 0.47479
dnaJ chaperone Hsp40, co-chaperone with DnaKchromosome CDS14168 1131 + 0.551724
dnaK chaperone Hsp70, co-chaperone with DnaJchromosome CDS12163 1917 + 0.511215
dsbA periplasmic protein disulfide isomerase Ichromosome CDS3592637 627 - 0.480064
dsbB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase Ichromosome CDS1234077 531 - 0.527307
dsbC protein disulfide isomerase IIchromosome CDS3036768 711 - 0.483826
dsbG periplasmic disulfide isomerase/thiol-disulphide oxidasechromosome CDS637050 747 - 0.468541
fdhE formate dehydrogenase formation proteinchromosome CDS3555453 930 + 0.546237
fklB FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4433615 621 + 0.557166
fkpA FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4162997 813 + 0.482165
fkpB FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS25826 450 + 0.544444
flgA assembly protein for flagellar basal-body periplasmic P ringchromosome CDS1131781 660 - 0.522727
flgJ muramidasechromosome CDS1138948 942 + 0.546709
flgN export chaperone for FlgK and FlgLchromosome CDS1130991 417 - 0.482014
fliJ flagellar proteinchromosome CDS2020083 444 + 0.515766
fliS flagellar protein potentiates polymerizationchromosome CDS2007440 411 + 0.498783
ftsH protease, ATP-dependent zinc-metallochromosome CDS3324856 1935 - 0.535917
glnD uridylyltransferasechromosome CDS185978 2673 - 0.539469
glnE fused deadenylyltransferase and adenylyltransferase for glutamine synthetasechromosome CDS3195457 2841 - 0.559662
gntY predicted gluconate transport associated proteinchromosome CDS4094217 576 - 0.532986
groL Cpn60 chaperonin GroEL, large subunit of GroESLchromosome CDS4375705 1647 + 0.52884
groS Cpn10 chaperonin GroES, small subunit of GroESLchromosome CDS4375368 294 + 0.486395
grpE heat shock proteinchromosome CDS2748771 594 - 0.503367
grxA glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a)chromosome CDS890918 258 - 0.449612
grxB glutaredoxin 2chromosome CDS1124984 648 - 0.490741
grxC glutaredoxin 3chromosome CDS3855973 252 + 0.52381
gspO bifunctional prepilin leader peptidase and methylasechromosome CDS4174196 678 - 0.504425
gst glutathionine S-transferasechromosome CDS1716091 606 + 0.504951
hflC modulator for HflB protease specific for phage lambda cII repressorchromosome CDS4407980 1005 + 0.530348
hflK modulator for HflB protease specific for phage lambda cII repressorchromosome CDS4406718 1260 + 0.561905
hscA DnaK-like molecular chaperone specific for IscUchromosome CDS2655741 1851 - 0.576985
hscB DnaJ-like molecular chaperone specific for IscUchromosome CDS2657608 516 - 0.523256
hscC Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcriptionchromosome CDS682145 1671 - 0.500299
hslJ heat-inducible proteinchromosome CDS1443035 423 - 0.468085
hslO heat shock protein Hsp33chromosome CDS4109764 879 - 0.52901
hslU molecular chaperone and ATPase component of HslUV proteasechromosome CDS3514934 1332 + 0.526276
hslV peptidase component of the HslUV proteasechromosome CDS3514394 531 + 0.527307
htpG molecular chaperone HSP90 familychromosome CDS494344 1875 + 0.528533
htpX predicted endopeptidasechromosome CDS1913409 882 - 0.535147
hyaE protein involved in processing of HyaA and HyaB proteinschromosome CDS1036776 399 + 0.566416
hybG hydrogenase 2 accessory proteinchromosome CDS3138372 249 - 0.522088
hypB GTP hydrolase involved in nickel liganding into hydrogenaseschromosome CDS2849657 873 + 0.552119
hypC protein required for maturation of hydrogenases 1 and 3chromosome CDS2850520 273 + 0.553114
hypD protein required for maturation of hydrogenaseschromosome CDS2850792 1122 + 0.554367
hypE carbamoyl phosphate phosphatase, hydrogenase 3 maturation proteinchromosome CDS2851952 969 + 0.570691
hypF carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenaseschromosome CDS2833829 2253 - 0.576121
ibpA heat shock chaperonechromosome CDS3772993 414 + 0.471014
ibpB heat shock chaperonechromosome CDS3773518 429 + 0.48951
lon DNA-binding ATP-dependent protease Lachromosome CDS458112 2355 + 0.523142
msrA methionine sulfoxide reductase Achromosome CDS4446218 639 - 0.544601
nrdG anaerobic ribonucleotide reductase activating proteinchromosome CDS4464580 465 - 0.509677
nrdH glutaredoxin-like proteinchromosome CDS2799379 246 + 0.53252
nrfE heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfEchromosome CDS4295102 1659 + 0.573237
nrfF heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfFchromosome CDS4296753 384 + 0.523438
nrfG heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfGchromosome CDS4297133 597 + 0.517588
osmC osmotically inducible, stress-inducible membrane proteinchromosome CDS1558339 432 + 0.5
pcm L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS2867549 627 - 0.53429
pflA pyruvate formate lyase activating enzyme 1chromosome CDS950762 741 - 0.503374
pflC pyruvate formate lyase II activasechromosome CDS3489545 879 - 0.549488
ppiA peptidyl-prolyl cis-trans isomerase Achromosome CDS4148119 573 + 0.511344
ppiB peptidyl-prolyl cis-trans isomerase Bchromosome CDS553166 495 - 0.478788
ppiC peptidyl-prolyl cis-trans isomerase Cchromosome CDS3676868 282 + 0.51773
ppiD peptidyl-prolyl cis-trans isomerasechromosome CDS461139 1872 + 0.523504
ptr protease IIIchromosome CDS2954652 2889 - 0.511596
radA predicted repair proteinchromosome CDS4630592 1383 + 0.577007
slyD FKBP-type peptidyl prolyl cis-trans isomerasechromosome CDS4161919 591 + 0.553299
smpB trans-translation proteinchromosome CDS2753552 483 + 0.517598
sohB predicted inner membrane peptidasechromosome CDS1331046 1050 + 0.505714
sppA protease IVchromosome CDS1850551 1857 + 0.517501
sra 30S ribosomal subunit protein S22chromosome CDS1557540 138 - 0.442029
sspA stringent starvation protein Achromosome CDS3376637 639 - 0.536776
sufB component of SufBCD complexchromosome CDS1764236 1488 - 0.515457
sufC component of SufBCD complex, ATP-binding component of ABC superfamilychromosome CDS1763480 747 - 0.504685
sufD component of SufBCD complexchromosome CDS1762234 1272 - 0.533019
surA peptidyl-prolyl cis-trans isomerasechromosome CDS53416 1287 - 0.538462
tig peptidyl-prolyl cis/trans isomerasechromosome CDS454357 1299 + 0.511932
tpx lipid hydroperoxide peroxidasechromosome CDS1390019 507 - 0.512821
trxA thioredoxin 1chromosome CDS3670591 330 - 0.509091
trxB thioredoxin reductase, FAD/NAD(P)-bindingchromosome CDS931507 966 - 0.536232
trxC thioredoxin 2chromosome CDS2717391 420 + 0.495238
yagQ hypothetical proteinchromosome CDS296994 957 - 0.599791
ybbJ conserved inner membrane proteinchromosome CDS513625 456 - 0.574561
ybbK predicted protease, membrane anchoredchromosome CDS514080 918 - 0.528322
ybbN predicted thioredoxin domain-containing proteinchromosome CDS516649 855 - 0.559064
ybfN predicted lipoproteinchromosome CDS710212 327 + 0.480122
ybiY predicted pyruvate formate lyase activating enzymechromosome CDS863034 927 - 0.537217
ycaL predicted peptidase with chaperone functionchromosome CDS960686 765 + 0.499346
ycbZ predicted peptidasechromosome CDS1016961 1761 - 0.517888
ydcP predicted peptidasechromosome CDS1508495 1962 + 0.510703
ydfT predicted antitermination protein Qchromosome CDS1644203 753 - 0.479416
ydhD hypothetical proteinchromosome CDS1735468 348 - 0.525862
ydhH hypothetical proteinchromosome CDS1720207 1110 - 0.545946
yeaA methionine sulfoxide reductase Bchromosome CDS1863730 414 - 0.485507
yeaZ predicted peptidasechromosome CDS1892286 696 - 0.556035
yedF hypothetical proteinchromosome CDS2011616 234 + 0.482906
yeeD hypothetical proteinchromosome CDS2086363 228 - 0.504386
yegD predicted chaperonechromosome CDS2149811 1353 + 0.560976
yegQ predicted peptidasechromosome CDS2167805 1362 + 0.541116
yegU predicted hydrolasechromosome CDS2183429 1005 + 0.556219
yfcF hypothetical proteinchromosome CDS2425287 645 - 0.516279
yfcG predicted glutathione S-transferasechromosome CDS2426067 648 + 0.513889
yfjH hypothetical proteinchromosome CDS2756300 957 - 0.367816
ygcF hypothetical proteinchromosome CDS2903403 672 - 0.516369
yggG predicted peptidasechromosome CDS3080569 759 + 0.515152
yggX protein that protects iron-sulfur proteins against oxidative damagechromosome CDS3102749 276 + 0.474638
yghU predicted S-transferasechromosome CDS3137383 867 + 0.534025
ygjD predicted peptidasechromosome CDS3208186 1014 - 0.576923
yhbU predicted peptidase, collagenase-likechromosome CDS3301340 996 + 0.568273
yhbV predicted proteasechromosome CDS3302344 879 + 0.559727
yhfA hypothetical proteinchromosome CDS4154598 405 + 0.516049
yhhP conserved hypothetical protein required for cell growthchromosome CDS4031419 246 + 0.536585
yibF predicted glutathione S-transferasechromosome CDS3878460 609 + 0.527094
yifB predicted bifunctional protein, enzyme and transcriptional regulatorchromosome CDS3686682 1551 + 0.508059
yjjW predicted pyruvate formate lyase activating enzymechromosome CDS4619360 864 - 0.563657
yliJ predicted glutathione S-transferasechromosome CDS880276 627 - 0.519936
yncG hypothetical proteinchromosome CDS1527961 618 + 0.47411
yqjG predicted S-transferasechromosome CDS3249680 987 + 0.511651
 
Escherichia coli, B171
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
stbA pB171_068 hypothetical proteinpB171 CDS57494 972 - 0.425926
 
Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA plu4457 hypothetical proteinchromosome CDS5211179 1122 + 0.375223
NA plu0571 hypothetical proteinchromosome CDS646740 1107 + 0.368564
NA plu1693 hypothetical proteinchromosome CDS2019719 2067 - 0.397678
NA plu2820 hypothetical proteinchromosome CDS3350080 1677 + 0.339893
NA plu0396 hypothetical proteinchromosome CDS427632 408 + 0.409314
NA plu0239 hypothetical proteinchromosome CDS253901 570 - 0.412281
NA plu0198 hypothetical proteinchromosome CDS205881 576 - 0.439236
NA plu4223 hypothetical proteinchromosome CDS4940978 2682 - 0.521253
NA plu4565 hypothetical proteinchromosome CDS5329532 1698 - 0.398704
NA plu1733 Type 4 prepilin-like proteins leader peptide processing enzyme (Pectic enzyme secretion protein outO) [Includes: Leader peptidase (Prepilin peptidase)chromosome CDS2069076 795 + 0.506918
NA plu3444 hypothetical proteinchromosome CDS4057232 312 - 0.432692
NA plu1187 hypothetical proteinchromosome CDS1369496 642 - 0.38785
NA plu4418 hypothetical proteinchromosome CDS5166814 657 + 0.474886
NA plu0363 hypothetical proteinchromosome CDS388853 2646 - 0.490552
NA plu0848 hypothetical proteinchromosome CDS979372 486 + 0.347737
NA plu1773 hypothetical proteinchromosome CDS2115252 1731 - 0.440208
NA plu3820 hypothetical proteinchromosome CDS4488317 858 + 0.439394
NA plu2517 hypothetical proteinchromosome CDS2961704 2085 - 0.383693
NA plu1168 hypothetical proteinchromosome CDS1353190 273 - 0.399267
NA plu2338 hypothetical proteinchromosome CDS2754417 441 - 0.365079
NA plu1572 hypothetical proteinchromosome CDS1878570 621 - 0.386473
NA plu0701 hypothetical proteinchromosome CDS810304 672 + 0.41369
NA plu1675 hypothetical proteinchromosome CDS1996912 2085 - 0.384173
NA plu0599 hypothetical proteinchromosome CDS679941 996 - 0.435743
NA plu1716 hypothetical proteinchromosome CDS2046005 2085 - 0.394724
NA plu2398 hypothetical proteinchromosome CDS2817105 2082 + 0.382805
NA plu3164 hypothetical proteinchromosome CDS3724793 621 + 0.438003
NA plu0643 hypothetical proteinchromosome CDS734216 6372 + 0.521343
NA plu4259 hypothetical proteinchromosome CDS4983217 624 - 0.423077
NA plu2076 hypothetical proteinchromosome CDS2459773 1752 + 0.421804
NA plu1911 hypothetical proteinchromosome CDS2278708 1029 - 0.38484
NA plu2152 hypothetical proteinchromosome CDS2537081 744 + 0.376344
NA plu3821 hypothetical proteinchromosome CDS4489199 921 + 0.452769
NA plu2287 hypothetical proteinchromosome CDS2684731 2583 - 0.491289
NA plu1653 hypothetical proteinchromosome CDS1971785 2100 - 0.396667
NA plu2780 hypothetical proteinchromosome CDS3298249 1377 + 0.427015
NA plu2195 hypothetical proteinchromosome CDS2582780 237 + 0.447257
NA plu0451 hypothetical proteinchromosome CDS479186 780 + 0.297436
NA plu3822 hypothetical proteinchromosome CDS4490122 456 + 0.510965
NA plu3529 hypothetical proteinchromosome CDS4127578 789 - 0.378961
NA plu2231 hypothetical proteinchromosome CDS2624343 264 - 0.397727
NA plu1625 hypothetical proteinchromosome CDS1940992 900 - 0.387778
NA plu2911 hypothetical proteinchromosome CDS3435550 816 - 0.403186
NA plu3437 hypothetical proteinchromosome CDS4050155 936 - 0.443376
NA plu2604 hypothetical proteinchromosome CDS3045733 351 - 0.404558
NA plu4346 hypothetical proteinchromosome CDS5076996 1326 - 0.292609
NA plu2598 hypothetical proteinchromosome CDS3041021 1119 - 0.459339
NA plu2125 hypothetical proteinchromosome CDS2510368 237 - 0.434599
NA plu3411 hypothetical proteinchromosome CDS4031310 900 - 0.303333
NA plu4458 hypothetical proteinchromosome CDS5212323 2226 + 0.378706
NA plu2132 hypothetical proteinchromosome CDS2515649 696 + 0.484195
NA plu1186 hypothetical proteinchromosome CDS1368836 612 + 0.325163
NA plu4686 hypothetical proteinchromosome CDS5465936 1524 + 0.442913
aat plu1596 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1903041 696 - 0.448276
ahpC plu3907 alkyl hydroperoxide reductase, small subunit (antioxidant)chromosome CDS4579165 603 + 0.472637
bcp plu2748 bacterioferritin comigratory proteinchromosome CDS3259660 471 + 0.424628
clpA plu1594 ATP-dependent Clp protease ATP-binding subunit ClpAchromosome CDS1900290 2277 + 0.455863
clpB plu1270 heat shock protein F84.1chromosome CDS1469770 2574 + 0.447552
clpP plu3869 ATP-dependent Clp protease proteolytic subunitchromosome CDS4545372 624 - 0.43109
clpX plu3868 ATP-dependent protease ATP-binding subunitchromosome CDS4543964 1272 - 0.440252
cydC plu1597 Transport ATP-binding protein CydCchromosome CDS1903740 1749 - 0.474557
cydD plu1598 Transport ATP-binding protein CydDchromosome CDS1905491 1770 - 0.472316
cyoE plu3879 protoheme IX farnesyltransferasechromosome CDS4555862 885 + 0.437288
cysT plu1388 Sulfate transport system permease protein cysTchromosome CDS1667330 834 + 0.459233
degQ plu4018 Protease precursor DegQchromosome CDS4707551 1377 + 0.440813
degS plu4022 Protease precursor DegSchromosome CDS4711727 1059 + 0.442871
djlA plu0613 Dna-J like membrane chaperone proteinchromosome CDS696952 822 + 0.46837
dnaJ plu0580 heat shock protein dnaJ (HSP40) (chaperone protein)chromosome CDS657943 1119 + 0.472744
dnaK plu0579 molecular chaperone DnaKchromosome CDS655919 1911 + 0.478807
dsbA plu0381 Disulfide interchange protein DsbA precursorchromosome CDS410589 624 + 0.427885
dsbB plu2564 disulfide bond formation protein Bchromosome CDS3009614 510 + 0.431373
dsbC plu3551 Thiol:disulfide interchange protein DsbC precursorchromosome CDS4186031 708 - 0.423729
dsbD plu4139 thiol:disulfide interchange protein precursorchromosome CDS4828928 1728 + 0.451389
fdhE plu4896 formate dehydrogenase accessory protein FdhEchromosome CDS5671931 930 + 0.431183
fklB plu4561 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase (PPiase) (Rotamase) (FKBP22)chromosome CDS5325128 639 - 0.478873
fkpA plu0424 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS452965 765 + 0.43268
fkpB plu0593 peptidylprolyl isomerasechromosome CDS675284 471 + 0.433121
flgA plu1914 Flagella basal body P-ring formation protein FlgA precursorchromosome CDS2281063 660 - 0.422727
flgJ plu1923 flagellar biosynthesis proteinchromosome CDS2288270 945 + 0.485714
flgN plu1912 Flagella synthesis protein FlgNchromosome CDS2280184 441 - 0.446712
fliJ plu1944 flagellar proteinchromosome CDS2309817 444 - 0.45045
fliS plu1952 flagellar protein FliSchromosome CDS2317842 411 - 0.437956
ftsH plu4535 cell division proteinchromosome CDS5296811 1962 - 0.464832
gcp plu3976 O-sialoglycoprotein endopeptidase (glycoprotease)chromosome CDS4662154 1014 - 0.472387
glnD plu0670 PII uridylyl-transferasechromosome CDS768341 2649 - 0.453379
glnE plu3969 glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) (ATASE)chromosome CDS4653932 2871 - 0.460815
groEL plu4134 chaperonin GroELchromosome CDS4822824 1647 - 0.469338
groES plu4135 co-chaperonin GroESchromosome CDS4824520 294 - 0.438776
grpE plu3372 GrpE protein (HSP-70 cofactor) (heat shock protein B25.3) (HSP24)chromosome CDS4000675 582 - 0.448454
grxA plu1581 glutaredoxin 1 (Grx1)chromosome CDS1889263 261 - 0.452107
gst plu2594 Glutathione S-transferasechromosome CDS3037044 606 + 0.409241
hflC plu4578 Lambda CII stability-governing protein HflCchromosome CDS5343379 1011 - 0.454006
hflK plu4579 protease specific for phage lambda cII repressorchromosome CDS5344395 1221 - 0.481572
hscA plu3279 chaperone protein HscAchromosome CDS3894370 1851 - 0.486764
hscB plu3280 co-chaperone HscBchromosome CDS3896232 522 - 0.450192
hslJ plu2144 Heat shock protein HslJchromosome CDS2526677 414 - 0.396135
hslO plu0099 Hsp33-like chaperoninchromosome CDS95303 873 + 0.428408
hslU plu4763 ATP-dependent protease ATP-binding subunitchromosome CDS5545174 1332 + 0.465465
hslV plu4762 ATP-dependent protease peptidase subunitchromosome CDS5544632 531 + 0.480226
htpG plu3837 heat shock protein 90chromosome CDS4508191 1893 - 0.416799
htpX plu2681 heat shock protein HtpXchromosome CDS3184062 888 - 0.456081
lon plu3867 endopeptidase La, DNA-binding, ATP-dependent protease; heat shock K-proteinchromosome CDS4541401 2355 - 0.439915
msrA plu4555 methionine sulfoxide reductase Achromosome CDS5318686 648 + 0.455247
msrB plu2557 methionine sulfoxide reductase Bchromosome CDS3000941 411 - 0.452555
nrdG plu4500 Anaerobic ribonucleoside-triphosphate reductase activating protein (class III anaerobic ribonucleotide reductase small component)chromosome CDS5258346 465 + 0.445161
nrdH plu1287 Glutaredoxin-like protein NrdHchromosome CDS1497937 231 - 0.4329
pcm plu0717 protein-L-isoaspartate O-methyltransferasechromosome CDS824812 627 + 0.457735
pcp plu4303 Pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase)chromosome CDS5026910 663 + 0.491704
pflA plu1612 pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme)chromosome CDS1925820 741 - 0.441296
pilU plu1057 hypothetical proteinchromosome CDS1236269 666 + 0.489489
ppiA plu0391 Peptidyl-prolyl cis-trans isomerase A precursor (PPIase A) (Rotamase A) (Cyclophilin A)chromosome CDS423451 570 + 0.407018
ppiB plu3805 Peptidyl-prolyl cis-trans isomerase B (PPIase B) (rotamase B)chromosome CDS4472489 495 + 0.426263
ppiD plu3865 Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)chromosome CDS4538732 1872 - 0.401175
ptrA plu0631 Protease III precursor (pitrilysin)chromosome CDS717168 2892 + 0.426003
radA plu0552 DNA repair protein RadA (sms)chromosome CDS622889 1383 + 0.498192
rtxC plu1335 Cytolysin-activating lysine-acyltransferase RtxCchromosome CDS1553214 462 + 0.47619
sirA plu4109 hypothetical proteinchromosome CDS4798159 255 - 0.454902
slyD plu0422 peptidyl-prolyl cis-trans isomerase, FkbP-type (rotamase)chromosome CDS451818 573 + 0.504363
smpB plu3378 SsrA-binding proteinchromosome CDS4005528 483 + 0.440994
sohB plu2439 Possible protease sohBchromosome CDS2862686 1047 - 0.450812
sppA plu2553 protease IV (endopeptidase IV) (signal peptide peptidase)chromosome CDS2996740 1866 + 0.460343
sspA plu4013 stringent starvation protein Achromosome CDS4703356 642 - 0.456386
sufB plu2621 SufB proteinchromosome CDS3064850 1497 - 0.449566
sufC plu2620 Probable ATP-dependent transporter SufCchromosome CDS3064046 747 - 0.412316
sufD plu2619 SufD proteinchromosome CDS3062755 1317 - 0.450266
surA plu0611 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase surA) (PPIase) (Rotamase C)chromosome CDS692947 1302 - 0.456989
tig plu3870 trigger factorchromosome CDS4546269 1305 - 0.408429
tpx plu2579 thiol peroxidasechromosome CDS3021457 504 + 0.468254
trxA plu4664 thioredoxin 1 (TRX1) (TRX)chromosome CDS5437845 327 - 0.406728
trxB plu1599 thioredoxin reductase (NADPH)chromosome CDS1907395 960 - 0.476042
ureD plu2177 urease accessory proteinchromosome CDS2562603 966 + 0.47619
ureE plu2174 urease accessory proteinchromosome CDS2560639 597 + 0.41541
ureF plu2175 urease accessory proteinchromosome CDS2561232 687 + 0.473071
ureG plu2176 urease accessory proteinchromosome CDS2561971 636 + 0.449686
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SCV35 TraD proteinpSCV50 CDS30419 2199 - 0.542519
NA SCV37 TraG proteinpSCV50 CDS34262 807 - 0.433705
trbB SC096 TrbBpSC138 CDS74648 1071 + 0.514472
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC0604 putative ATPase involved in DNA repairchromosome CDS672850 1176 - 0.539116
NA SC1066 Suppression of copper sensitivity: lipoprotein modification in lgt mutants of E colichromosome CDS1182476 507 + 0.619329
NA SC4187 putative periplasmic or exported proteinchromosome CDS4491021 1401 - 0.533191
NA SC1065 Suppression of copper sensitivity: lipoprotein modification in lgt mutants of E colichromosome CDS1181863 624 + 0.522436
NA SC4295 putative cytoplasmic proteinchromosome CDS4598450 330 + 0.545455
NA SC1865 putative inner membrane proteinchromosome CDS1977264 615 + 0.427642
NA SC0700 putative RNAchromosome CDS779768 363 + 0.5427
NA SC2837 hypothetical proteinchromosome CDS3001573 495 - 0.482828
NA SC0687 putative heatshock protein, homolog of hsp70 in Hsc66 subfamilychromosome CDS765068 1680 - 0.528571
aat SC0909 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1014808 705 - 0.568794
ahpC SC0639 alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxideschromosome CDS712997 564 + 0.507092
ahpF SC0640 alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxideschromosome CDS713802 1566 + 0.553001
bcfH SC0026 putative thiol-disulfide isomerasechromosome CDS31274 846 + 0.549645
bcp SC2486 bacterioferritin comigratory proteinchromosome CDS2619530 471 + 0.481953
btuE SC1360 ABC superfamily (binding protein), vitamin B12 transport proteinchromosome CDS1456749 552 + 0.496377
cbpA SC1063 curved DNA-binding proteinchromosome CDS1178413 921 - 0.53203
ccmA SC2259 ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis proteinchromosome CDS2367329 618 - 0.729773
ccmA SC3737 ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis proteinchromosome CDS3956587 924 - 0.701299
ccmB SC2258 ABC superfamily (membrane) heme exporter protein, cytochrome c-type biogenesis proteinchromosome CDS2366673 660 - 0.69697
ccmC SC2257 ABC superfamily (membrane) heme exporter protein, cytochrome c-type biogenesis proteinchromosome CDS2365884 747 - 0.65328
ccmE SC2255 periplasmic heme-dependent peroxidase, cytochrome c-type biogenesis proteinchromosome CDS2365199 480 - 0.654167
ccmF SC2254 cytochrome c-type biogenesis proteinchromosome CDS2363271 1932 - 0.679607
ccmF SC3736 cytochrome c-type biogenesis proteinchromosome CDS3954659 1932 - 0.679607
ccmG SC3735 heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesischromosome CDS3954105 558 - 0.61828
ccmG SC2253 heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesischromosome CDS2362717 558 - 0.61828
ccmH SC2252 putative heme lyase subunit, cytochrome c-type biogenesischromosome CDS2361677 1044 - 0.676245
clpA SC0900 ATP-binding subunit of serine proteasechromosome CDS1007720 2277 + 0.538867
clpB SC2663 ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpEchromosome CDS2819353 2574 - 0.533411
clpP SC0490 ATP-dependent Clp protease proteolytic subunitchromosome CDS547451 741 + 0.496626
clpX SC0491 ATP-dependent protease ATP-binding subunitchromosome CDS548443 1272 + 0.52673
csgB SC1091 minor curlin subunit precursor, nucleator for assembly of adhesive surface organelleschromosome CDS1211218 456 + 0.432018
cydC SC0910 ABC superfamily (atp&memb), cytochrome-related transporterchromosome CDS1015557 1722 - 0.574332
cydD SC0911 ABC superfamily (atp&memb), cytochrome-related transporter, Zn sensitivechromosome CDS1017279 1767 - 0.564233
cyoE SC0481 protoheme IX farnesyltransferasechromosome CDS537710 936 - 0.535256
cypD SC0494 peptidyl prolyl isomerasechromosome CDS553026 1872 + 0.524038
cysU SC2442 ABC superfamily (membrane), thiosulfate transport proteinchromosome CDS2570343 834 - 0.558753
degQ SC3286 serine endoproteasechromosome CDS3470158 1368 + 0.542398
degS SC3287 periplasmic serine endoproteasechromosome CDS3471618 1071 + 0.544351
djlA SC0089 Dna-J like membrane chaperone proteinchromosome CDS102642 813 + 0.537515
dnaJ SC0013 heat shock protein, DnaJ and GrpE stimulates ATPase activity of DnaKchromosome CDS13596 1140 + 0.540351
dnaK SC0012 molecular chaperone DnaKchromosome CDS11594 1917 + 0.525822
dsbA SC3890 periplasmic protein disulfide isomerase Ichromosome CDS4138277 624 + 0.504808
dsbA SC3137 putative thiol-disulfide isomerase and thioredoxinchromosome CDS3317080 672 + 0.456845
dsbB SC1800 disulfide bond formation protein Bchromosome CDS1923687 531 + 0.549906
dsbC SC2983 protein disulfide isomerase IIchromosome CDS3161860 714 - 0.504202
dsbD SC4201 thiol:disulfide interchange protein precursorchromosome CDS4502083 1704 - 0.567488
dsbG SC0638 periplasmic disulfide isomerase, thiol-disulphide oxidasechromosome CDS711810 747 - 0.506024
dsbI SC3138 putative disulfide oxidoreductasechromosome CDS3317766 678 + 0.5059
fdhE SC3924 formate dehydrogenase accessory protein FdhEchromosome CDS4175330 930 - 0.583871
fklB SC4271 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4568513 732 + 0.553279
fkpA SC3387 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3559314 819 - 0.517705
flgA SC1120 flagellar basal body P-ring biosynthesis proteinchromosome CDS1237485 660 - 0.578788
flgJ SC1129 flagellar biosynthesis proteinchromosome CDS1244507 951 + 0.561514
flgN SC1118 flagellar biosynthesis: belived to be export chaperone for FlgK and FlgLchromosome CDS1236673 423 - 0.539007
fliJ SC1978 flagellar proteinchromosome CDS2083062 444 + 0.513514
fliS SC1965 flagellar protein FliSchromosome CDS2072592 408 + 0.495098
ftsH SC3234 ATP-dependent zinc-metallo proteasechromosome CDS3419430 1944 - 0.553498
gcp SC3155 putative O-sialoglycoprotein endopeptidasechromosome CDS3334888 1014 - 0.581854
glnD SC0214 PII uridylyl-transferasechromosome CDS246256 2673 - 0.559671
glnE SC3148 adenylyl transferase for glutamine synthetase, regulates P-II (GlnB) and GlnKchromosome CDS3326115 2844 - 0.571027
groEL SC4209 chaperonin GroELchromosome CDS4509812 1647 + 0.547055
groES SC4208 co-chaperonin GroESchromosome CDS4509295 474 + 0.470464
grpE SC2683 molecular chaparone; heat shock proteinchromosome CDS2838764 783 - 0.503193
grxA SC0866 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS972821 264 - 0.431818
grxB SC1113 glutaredoxin 2chromosome CDS1230403 648 - 0.46142
grxC SC3625 glutaredoxin 3chromosome CDS3839050 252 - 0.511905
gst SC1469 glutathionine S-transferasechromosome CDS1563425 606 - 0.519802
gth SC4146 putative glutathione S-transferasechromosome CDS4439748 669 + 0.550075
hflC SC4240 HflC, with HflK, part of modulator for protease specific for FtsH phage lambda cII repressorchromosome CDS4542414 1005 + 0.541294
hflK SC4239 HflK, with HflC, part of modulator for protease specific for FtsH phage lambda cII repressorchromosome CDS4541152 1260 + 0.568254
hopD SC3376 leader peptidase HopDchromosome CDS3551227 594 + 0.521886
hscB SC2534 co-chaperone HscBchromosome CDS2700667 516 - 0.542636
hslJ SC1643 heat shock protein hslJchromosome CDS1754312 411 + 0.525547
hslO SC3430 Hsp33-like chaperoninchromosome CDS3606973 885 + 0.542373
hslU SC3980 ATP-dependent protease ATP-binding subunitchromosome CDS4232189 1332 - 0.53003
hslV SC3981 ATP-dependent protease peptidase subunitchromosome CDS4233530 531 - 0.538606
htpG SC0528 heat shock protein 90chromosome CDS588259 1899 + 0.52554
htpX SC1840 heat shock protein HtpXchromosome CDS1956011 882 - 0.529478
htrA SC0209 periplasmic serine protease Do, heat shock proteinchromosome CDS240596 1437 + 0.540014
hyaE SC1551 putative hydrogenasechromosome CDS1648130 411 - 0.530414
hyaE SC1785 putative thiol-disulfide isomerase and thioredoxinschromosome CDS1904241 405 + 0.577778
hybG SC3084 hydrogenase-2 operon proteinchromosome CDS3266660 249 - 0.53012
hypB SC2788 hydrogenase-3 accessory protein, assembly of metallocenterchromosome CDS2954638 873 + 0.573883
hypC SC2789 putative hydrogenase expression/formation proteinchromosome CDS2955501 273 + 0.556777
hypD SC2790 putative hydrogenase expression/formation proteinchromosome CDS2955773 1122 + 0.579323
hypE SC2791 putative hydrogenase expression/formation proteinchromosome CDS2956891 1011 + 0.59545
hypF SC2775 hydrogenase maturation proteinchromosome CDS2942152 2241 - 0.601071
ibp SC1262 putative molecular chaperone (small heat shock protein)chromosome CDS1367132 471 + 0.454352
ibpA SC3732 small heat shock proteinchromosome CDS3950883 414 - 0.502415
ibpB SC3731 small heat shock proteinchromosome CDS3950345 429 - 0.515152
int SC1860 putative cytoplasmic proteinchromosome CDS1973747 369 + 0.474255
lon SC0492 DNA-binding, ATP-dependent protease la; cleaves RcsA and SulA, heat shock k-protein (DNA binding activity)chromosome CDS549900 2355 + 0.53758
lonH SC1020 putative proteasechromosome CDS1139109 1761 - 0.537195
lpxO SC4165 putative dioxygenase for synthesis of lipidchromosome CDS4462396 909 - 0.504951
maaI SC2193 putative glutathione S-transferasechromosome CDS2295493 645 - 0.562791
msrA SC4283 methionine sulfoxide reductase Achromosome CDS4582721 639 - 0.547731
nrdG SC4306 anaerobic ribonucleotide reductase activating proteinchromosome CDS4606478 465 - 0.55914
nrdH SC2739 glutaredoxin-like protein; hydrogen donorchromosome CDS2906525 261 + 0.536398
nrfE SC4160 formate-dependent nitrite reductase; involved in attachment of haem c to cytochrome c552chromosome CDS4454376 2223 + 0.582096
nrfG SC4161 part of formate-dependent nitrite reductase complex; involved in attachment of haem c to cytochrome c552chromosome CDS4456595 621 + 0.570048
osmC SC1564 putative resistance protein, osmotically induciblechromosome CDS1658060 432 - 0.518519
pcm SC2858 protein-L-isoaspartate O-methyltransferasechromosome CDS3022780 627 - 0.566188
pflA SC0924 pyruvate formate lyase activating enzyme 1chromosome CDS1036641 879 - 0.485779
pflC SC4005 putative pyruvate formate lyase activating enzyme 2chromosome CDS4265444 879 + 0.547213
pflE SC0839 putative pyruvate formate lyase activating enzymechromosome CDS940197 900 - 0.552222
phnU SC0468 2-aminoethylphosphonate transporter, memrane componentchromosome CDS524574 861 - 0.571429
ppiA SC3405 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS3575661 573 - 0.504363
ppiB SC0575 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS642818 495 - 0.490909
ppiC SC3815 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS4054073 282 - 0.457447
prgI SC2805 cell invasion protein; cytoplasmicchromosome CDS2969602 243 - 0.460905
ptr SC2933 protease IIIchromosome CDS3109339 2889 - 0.523018
radA SC4424 putative ATP-dependent protease, DNA repair proteinchromosome CDS4732544 1383 + 0.597975
req SC2619 Gifsy-2 prophage putative molecular chaperone, DnaJ familychromosome CDS2779172 798 - 0.463659
rpsV SC1566 30S ribosomal subunit protein S22chromosome CDS1659313 144 + 0.5
slpA SC0042 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS51598 450 + 0.546667
slyD SC3389 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)chromosome CDS3560765 591 - 0.553299
smpB SC2688 SsrA-binding proteinchromosome CDS2843616 528 + 0.484848
sohB SC1713 putative peptidasechromosome CDS1826217 1047 - 0.543458
sppA SC1317 protease IV, a signal peptide peptidasechromosome CDS1413896 1857 - 0.559505
sspA SC3280 stringent starvation protein Achromosome CDS3465294 639 - 0.517997
sufB SC1390 putative ABC transporterchromosome CDS1490114 1488 + 0.524194
sufC SC1391 putative ABC superfamily (atp_bind) transport proteinchromosome CDS1491618 747 + 0.528782
sufD SC1392 required for stability of iron-sulfur component of FhuFchromosome CDS1492339 1272 + 0.53695
surA SC0087 peptidyl-prolyl cis-trans isomerase, survival proteinchromosome CDS98688 1287 - 0.543901
tig SC0489 trigger factorchromosome CDS546022 1299 + 0.5204
tpx SC1675 thiol peroxidasechromosome CDS1788718 507 + 0.497041
trxA SC3821 thioredoxinchromosome CDS4059887 408 + 0.487745
trxB SC0912 thioredoxin reductasechromosome CDS1019159 969 - 0.546956
trxC SC2654 thioredoxin 2, redox factorchromosome CDS2805877 420 + 0.533333
tsaA SC0444 putative thiol - alkyl hydroperoxide reductasechromosome CDS502565 603 - 0.532338
vg05 SC1218 Gifsy-1 prophage head-tail preconnector gp5chromosome CDS1329539 1497 + 0.566466
ybbJ SC0541 putative Membrane protein implicated in regulation of membrane protease activitychromosome CDS605330 453 - 0.600442
ybbK SC0542 putative inner membrane proteinchromosome CDS605779 918 - 0.54793
ybbN SC0545 paral putative thioredoxin proteinchromosome CDS608372 855 - 0.549708
ybeL SC0682 putative cytoplasmic proteinchromosome CDS759110 474 + 0.556962
ybeS SC0685 putative molecular chaperone, DnaJ familychromosome CDS761446 1434 + 0.550907
ycaL SC0933 putative Zn-dependent protease with chaperone functionchromosome CDS1048008 762 + 0.511811
ydcP SC1601 putative collagenasechromosome CDS1706784 1965 - 0.527226
ydhD SC1452 putative glutaredoxin proteinchromosome CDS1548966 348 + 0.508621
ydhH SC1464 putative cytoplasmic proteinchromosome CDS1558792 1122 + 0.571301
yeaA SC1304 methionine sulfoxide reductase Bchromosome CDS1401621 444 + 0.511261
yeaZ SC1814 putative molecular chaperonechromosome CDS1932937 696 - 0.603448
yedF SC1970 Hypothetical protein yedFchromosome CDS2076764 234 + 0.491453
yegD SC2128 putative heat shock protein (Hsp70/DnaK)chromosome CDS2224965 1353 + 0.592757
yegQ SC2151 putative proteasechromosome CDS2253094 1362 + 0.544787
yegU SC3958 putative ADP-ribosylglycohydrolasechromosome CDS4210960 1041 + 0.570605
yegU SC2158 putative glycohydrolasechromosome CDS2260057 1005 + 0.589055
yeiS SC2202 putative inner membrane proteinchromosome CDS2303463 240 + 0.408333
yfcF SC2349 putataive glutathione-S-transferasechromosome CDS2474037 645 - 0.565891
yfcG SC2350 putative glutathione S-transferasechromosome CDS2474824 648 + 0.529321
ygcF SC2884 putative Organic radical activating enzymechromosome CDS3049995 672 - 0.514881
yggG SC3019 putative Zn-dependent protease with possible chaperone functionchromosome CDS3196838 759 + 0.545455
yggX SC3052 hypothetical proteinchromosome CDS3229257 276 + 0.474638
yghU SC3081 putative glutathione S-transferasechromosome CDS3263897 867 + 0.545559
yhbU SC3215 putative proteasechromosome CDS3396300 996 + 0.586345
yhbV SC3216 putative proteasechromosome CDS3397286 897 + 0.559643
yhfA SC3399 putative inner membrane proteinchromosome CDS3569372 405 - 0.533333
yhgI SC3443 putative Thioredoxin-like proteins and domainchromosome CDS3622960 576 + 0.538194
yhhP SC3507 hypothetical proteinchromosome CDS3700623 336 - 0.514881
yibF SC3608 putative glutathione S-transferasechromosome CDS3816732 609 - 0.555008
yifB SC3806 putative magnesium chelatase, subunit ChlIchromosome CDS4042009 1521 - 0.527285
yjjW SC4413 pyruvate formate lyase activating enzymechromosome CDS4721095 864 - 0.560185
yliJ SC0856 putative glutathione S-transferasechromosome CDS962374 627 - 0.54067
yqjI SC3161 putative transcriptional regulatorchromosome CDS3342225 648 + 0.53858
 
Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SNSL254_pSN254_0094 hypothetical proteinpSN254 CDS80816 708 + 0.514124
NA SNSL254_pSN254_0055 hypothetical proteinpSN254 CDS38020 507 + 0.538462
NA SNSL254_pSN254_0014 DSBA-like thioredoxin domain proteinpSN254 CDS9478 861 + 0.534262
NA SNSL254_pSN254_0013 signal peptide peptidase SppA domain proteinpSN254 CDS8485 978 + 0.541922
NA SNSL254_pSN254_0081 hypothetical proteinpSN254 CDS60806 708 - 0.514124
groL SNSL254_pSN254_0147 60 kDa chaperonin GroLpSN254 CDS128544 1638 + 0.667888
groS SNSL254_pSN254_0146 10 kDa chaperonin GroSpSN254 CDS128168 321 + 0.632399
tniB SNSL254_pSN254_0157 transposition protein TniBpSN254 CDS139976 861 - 0.656214
 
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPA0666 hypothetical proteinchromosome CDS750073 246 - 0.402439
NA SPA2496 ClpB-like proteinchromosome CDS2595182 2664 - 0.590841
NA SPA2384 probable secreted proteinchromosome CDS2485824 399 - 0.360902
NA SPA0675 glutathione-S-transferase-family proteinchromosome CDS757638 645 + 0.562791
NA SPA3061 dsbA-like proteinchromosome CDS3166778 672 + 0.46131
NA SPA4310 hypothetical proteinchromosome CDS4479168 666 + 0.564565
NA SPA1008 hypothetical proteinchromosome CDS1080832 615 - 0.43252
NA SPA4084 putative glutathione S transferasechromosome CDS4257055 669 + 0.54559
NA SPA3910 hypothetical proteinchromosome CDS4055957 1041 + 0.564842
NA SPA4127 hypothetical proteinchromosome CDS4308382 1401 - 0.524625
NA SPA4099 cytochrome c-type biogenesis proteinchromosome CDS4273469 510 + 0.554902
NA SPA1217 putative thiol peroxidasechromosome CDS1286521 558 + 0.439068
NA SPA2494 hypothetical proteinchromosome CDS2594806 291 - 0.426117
NA SPA2399 antiterminationchromosome CDS2509699 624 - 0.50641
NA SPA3603 hypothetical proteinchromosome CDS3736825 345 - 0.394203
NA SPA3062 putative disulfide oxidoreductasechromosome CDS3167464 678 + 0.50885
NA SPA2321 probable peroxidasechromosome CDS2414372 603 + 0.532338
NA SPA2160 putative ATPase involved in DNA repairchromosome CDS2251022 1176 + 0.535714
aat SPA1843 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1920954 705 + 0.567376
ahpC SPA2126 alkyl hydroperoxide reductase c22 proteinchromosome CDS2211480 564 - 0.501773
ahpF SPA2125 alkyl hydroperoxide reductase F52A protein (subunit F)chromosome CDS2209673 1566 - 0.551086
bcfH SPA0028 hypothetical proteinchromosome CDS31267 846 + 0.544917
bcp SPA0378 bacterioferritin comigratory proteinchromosome CDS444656 471 - 0.47983
btuE SPA1502 putative glutathione peroxidase/vitamin B12 transport periplasmic protein BtuEchromosome CDS1577646 552 - 0.494565
cbpA SPA1738 curved DNA-binding proteinchromosome CDS1798405 921 + 0.533116
ccmA SPA3669 heme exporter protein A1chromosome CDS3806036 618 - 0.728155
ccmA SPA0610 heme exporter protein A1chromosome CDS691606 618 + 0.728155
ccmB SPA3668 heme exporter protein B1chromosome CDS3805380 660 - 0.701515
ccmB SPA0611 heme exporter protein B1chromosome CDS692223 657 + 0.701674
ccmC SPA3667 heme exporter protein C1chromosome CDS3804591 738 - 0.651762
ccmC SPA0612 heme exporter protein C1chromosome CDS692931 738 + 0.651762
ccmE SPA0614 cytochrome c-type biogenesis protein E1chromosome CDS693874 480 + 0.658333
ccmE SPA3665 cytochrome c-type biogenesis protein E1chromosome CDS3803906 480 - 0.658333
ccmF SPA3664 cytochrome c-type biogenesis protein F1chromosome CDS3801978 1932 - 0.681159
ccmF SPA0615 cytochrome c-type biogenesis protein F1chromosome CDS694350 1932 + 0.681159
ccmG SPA3663 heme lyase/disulfide oxidoreductase, cytochrome c-type biogenesischromosome CDS3801424 558 - 0.61828
ccmH SPA0617 cytochrome c-type biogenesis protein H1chromosome CDS696832 1044 + 0.679119
clpA SPA1854 ATP-dependent Clp protease ATP-binding subunit ClpAchromosome CDS1928696 2277 - 0.541063
clpB SPA2521 ClpB protein (heat shock protein f84.1)chromosome CDS2619961 2574 - 0.533023
clpP SPA2274 ATP-dependent Clp protease proteolytic subunitchromosome CDS2369275 624 - 0.512821
clpX SPA2273 ATP-dependent protease ATP-binding subunitchromosome CDS2367752 1272 - 0.529088
csgB SPA1708 nucleation component of curlin monomerschromosome CDS1767288 456 - 0.434211
cydC SPA1842 transport ATP-binding protein CydCchromosome CDS1919188 1722 + 0.571429
cydD SPA1841 transport ATP-binding protein CydDchromosome CDS1917490 1698 + 0.570671
cyoE SPA2283 protoheme IX farnesyltransferasechromosome CDS2378864 891 + 0.530864
cysU SPA0423 sulphate transport system permease protein CysTchromosome CDS492720 834 + 0.557554
degQ SPA3215 serine proteasechromosome CDS3321975 1368 + 0.539474
degS SPA3216 serine proteasechromosome CDS3323435 1071 + 0.545285
djlA SPA0095 Dna-J like membrane chaperone proteinchromosome CDS108314 813 + 0.538745
dnaJ SPA0013 DnaJ proteinchromosome CDS13596 1128 + 0.536348
dnaK SPA0012 molecular chaperone DnaKchromosome CDS11594 1917 + 0.527908
dsbA SPA3838 thiol:disulfide interchange proteinchromosome CDS3982278 624 + 0.5
dsbB SPA1066 disulfide bond formation protein Bchromosome CDS1133093 531 - 0.548023
dsbC SPA2911 thiol:disulfide interchange proteinchromosome CDS3021308 714 - 0.502801
dsbD SPA4139 thiol:disulfide interchange protein precursorchromosome CDS4317121 1704 - 0.571009
dsbE SPA0616 thiol:disulfide interchange proteinchromosome CDS696278 558 + 0.61828
dsbG SPA2127 thiol:disulfide interchange protein DsbG precursorchromosome CDS2212484 747 + 0.500669
fdhE SPA3876 formate dehydrogenase accessory protein FdhEchromosome CDS4020327 930 - 0.57957
fklB SPA4214 probable FkbP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4382920 663 + 0.559578
fkpA SPA3319 FKBP-type peptidyl-prolyl isomerasechromosome CDS3411258 819 - 0.507937
fkpB SPA0049 probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerasechromosome CDS57310 450 + 0.546667
flgA SPA1678 flagellar basal body P-ring biosynthesis proteinchromosome CDS1740785 660 + 0.578788
flgJ SPA1669 flagellar biosynthesis proteinchromosome CDS1733472 951 - 0.564669
flgN SPA1680 flagella synthesis protein FlgNchromosome CDS1741834 423 + 0.541371
fliJ SPA0897 flagellar proteinchromosome CDS977201 444 - 0.513514
fliS SPA0909 flagellar protein FliSchromosome CDS987705 408 - 0.5
ftsH SPA3163 cell division proteinchromosome CDS3272157 1935 - 0.559173
gcp SPA3076 possible glycoproteasechromosome CDS3183272 1014 - 0.580868
glnD SPA0220 PII uridylyl-transferasechromosome CDS254415 2673 - 0.562664
glnE SPA3069 adenyl-transferasechromosome CDS3174499 2844 - 0.573488
gp1 SPA2394 portal proteinchromosome CDS2502197 2004 - 0.500499
groEL SPA4147 chaperonin GroELchromosome CDS4324850 1647 + 0.545234
groES SPA4146 co-chaperonin GroESchromosome CDS4324513 294 + 0.472789
grpE SPA2540 heat shock protein GrpE (heat shock protein b25.3) (hsp24)chromosome CDS2639385 591 - 0.522843
grxA SPA1890 glutaredoxin 1chromosome CDS1965623 264 + 0.431818
grxB SPA1686 glutaredoxin 2chromosome CDS1747878 648 + 0.467593
grxC SPA3554 glutaredoxin 3chromosome CDS3684493 252 - 0.511905
gst SPA1402 glutathione S-transferasechromosome CDS1485952 606 + 0.513201
hflC SPA4181 HflC proteinchromosome CDS4357543 1005 + 0.541294
hflK SPA4180 HflK proteinchromosome CDS4356281 1260 + 0.568254
hopD SPA3308 Type III leader peptidasechromosome CDS3403297 468 + 0.525641
hscA SPA0327 chaperone protein HscAchromosome CDS366637 1851 + 0.592112
hscB SPA0326 co-chaperone HscBchromosome CDS366109 516 + 0.544574
hslJ SPA1238 heat shock proteinchromosome CDS1307682 411 - 0.520681
hslO SPA3363 Hsp33-like chaperoninchromosome CDS3459199 879 + 0.549488
hslS SPA3658 heat shock protein Bchromosome CDS3797536 429 - 0.519814
hslT SPA3659 heat shock protein Achromosome CDS3798074 414 - 0.502415
hslU SPA3934 ATP-dependent protease ATP-binding subunitchromosome CDS4077198 1332 - 0.532282
hslV SPA3935 ATP-dependent protease peptidase subunitchromosome CDS4078539 531 - 0.544256
htpG SPA2235 heat shock protein 90chromosome CDS2327671 1899 - 0.530279
htpX SPA1029 heat shock protein HtpXchromosome CDS1101192 882 + 0.526077
htrA SPA0215 protease DO precursor; heat shock protein HtrAchromosome CDS248764 1428 + 0.545518
hyaE SPA1083 hydrogenase-1 operon protein HyaEchromosome CDS1152663 405 - 0.577778
hyaE2 SPA1322 hydrogenase-1 operon protein HyaE2chromosome CDS1406522 411 + 0.525547
hybG SPA3011 hydrogenase-2 component proteinchromosome CDS3116024 249 - 0.526104
hypB SPA2713 hydrogenase isoenzyme formation protein HypBchromosome CDS2815646 873 + 0.579611
hypC SPA2714 hydrogenase isoenzyme formation protein HypCchromosome CDS2816509 273 + 0.553114
hypD SPA2715 hydrogenase isoenzyme formation protein HypDchromosome CDS2816781 1122 + 0.581996
hypE SPA2716 hydrogenase isoenzyme formation protein HypEchromosome CDS2817941 969 + 0.591331
hypf SPA2700 hydrogenase maturation proteinchromosome CDS2803159 2241 - 0.603748
lon SPA2272 Lon proteasechromosome CDS2365212 2355 - 0.539703
lonH SPA1782 hypothetical proteinchromosome CDS1838068 1761 + 0.53833
lpxO SPA4104 putative membrane-bound beta-hydroxylasechromosome CDS4279786 909 - 0.508251
msrA SPA4228 methionine sulfoxide reductase Achromosome CDS4397781 639 - 0.552426
ninX SPA2404 hypothetical proteinchromosome CDS2511520 342 - 0.412281
nrdG SPA4251 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS4421945 465 - 0.55914
nrdH SPA2663 putative glutaredoxinchromosome CDS2767684 246 + 0.556911
nrfE SPA4098 cytochrome c-type biogenesis proteinchromosome CDS4271740 1737 + 0.595279
nrfG SPA4100 NrfG proteinchromosome CDS4273975 621 + 0.566828
osmC SPA1305 osmotically inducible protein Cchromosome CDS1385556 432 + 0.511574
pcm SPA2782 protein-L-isoaspartate O-methyltransferasechromosome CDS2880816 627 - 0.569378
pflA SPA1828 pyruvate formate-lyase 1 activating enzymechromosome CDS1899005 798 + 0.488722
phnU SPA2296 probable membrane component of 2-aminoethylphosphonate transporterchromosome CDS2392030 870 + 0.572414
ppiA SPA3338 peptidyl-prolyl cis-trans isomerasechromosome CDS3427612 573 - 0.507853
ppiB SPA2187 peptidyl-prolyl cis-trans isomerase Bchromosome CDS2274390 495 + 0.49697
ppiC SPA3749 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3894591 282 - 0.457447
ppiD SPA2270 peptidyl-prolyl cis-trans isomerase Dchromosome CDS2362569 1872 - 0.523504
prgI SPA2731 pathogenicity 1 island effector proteinchromosome CDS2830621 243 - 0.45679
ptr SPA2860 protease III precursor (pitrilysin)chromosome CDS2967278 2889 - 0.519211
radA SPA4389 putative DNA repair proteinchromosome CDS4562078 1383 + 0.597975
rpsV SPA1303 30S ribosomal protein S22chromosome CDS1384591 144 - 0.493056
scsC SPA1735 secreted protein, suppressor for copper-sensitivity C precursorchromosome CDS1795252 624 - 0.525641
scsD SPA1734 secreted protein, suppressor for copper-sensitivity Dchromosome CDS1794756 507 - 0.619329
slyD SPA3321 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3412704 591 - 0.558376
smpB SPA2547 SsrA-binding proteinchromosome CDS2644281 483 + 0.494824
sohB SPA1160 putative proteasechromosome CDS1228210 1047 + 0.536772
sppA SPA1549 protease IVchromosome CDS1624074 1857 + 0.557351
sspA SPA3210 stringent starvation protein Achromosome CDS3318015 639 - 0.521127
sufB SPA1484 hypothetical proteinchromosome CDS1558431 1488 - 0.521505
sufC SPA1483 putative ABC transport ATP-binding subunitchromosome CDS1557668 747 - 0.53012
surA SPA0093 survival protein SurA precursorchromosome CDS104366 1287 - 0.544678
tig SPA2275 trigger factorchromosome CDS2370145 1299 - 0.525019
tpx SPA1202 thiol peroxidasechromosome CDS1270682 507 - 0.502959
trxA SPA3756 thioredoxinchromosome CDS3902393 330 + 0.490909
trxB SPA1840 thioredoxin reductasechromosome CDS1916339 969 + 0.550052
ybbJ SPA2222 hypothetical proteinchromosome CDS2311640 453 + 0.598234
ybbN SPA2218 thioredoxin-like proteinchromosome CDS2308376 855 + 0.554386
ybeL SPA2081 hypothetical proteinchromosome CDS2165425 474 - 0.556962
ybiY SPA1911 putative pyruvate formate-lyase 3 activating enzymechromosome CDS1988366 900 + 0.554444
ycaL SPA1819 putative lipoproteinchromosome CDS1887669 762 - 0.511811
ydcP SPA1264 putative peptidasechromosome CDS1334637 1965 + 0.526718
ydhD SPA1420 hypothetical proteinchromosome CDS1500673 348 - 0.505747
ydhH SPA1407 hypothetical proteinchromosome CDS1490069 1122 - 0.578431
yeaA SPA1553 methionine sulfoxide reductase Bchromosome CDS1628396 429 - 0.515152
yeaZ SPA1053 hypothetical proteinchromosome CDS1123676 696 + 0.603448
yedF SPA0904 hypothetical proteinchromosome CDS983719 234 - 0.491453
yegD SPA0741 hypothetical proteinchromosome CDS824923 1353 - 0.596452
yegQ SPA0716 putative proteasechromosome CDS799128 1362 - 0.54699
yegU SPA0709 putative hydrolasechromosome CDS792543 1005 - 0.58209
yfcF SPA0516 putative glutathione-S transferasechromosome CDS587639 645 + 0.565891
yfcG SPA0515 putative glutathione-S transferasechromosome CDS586849 648 - 0.530864
yfiG SPA0268 thioredoxin 2chromosome CDS306079 420 - 0.533333
ygcF SPA2807 hypothetical proteinchromosome CDS2906961 672 - 0.516369
yggG SPA2948 hypothetical proteinchromosome CDS3056278 759 + 0.552042
yggX SPA2974 hypothetical proteinchromosome CDS3079124 276 + 0.474638
yghU SPA3008 possible transferasechromosome CDS3113252 867 + 0.546713
yhbU SPA3143 putative proteasechromosome CDS3250385 996 + 0.590361
yhbV SPA3144 hypothetical proteinchromosome CDS3251389 879 + 0.566553
yhfA SPA3331 hypothetical proteinchromosome CDS3421323 405 - 0.530864
yhgI SPA3376 hypothetical proteinchromosome CDS3475164 576 + 0.538194
yhhP SPA3429 hypothetical proteinchromosome CDS3537335 246 - 0.54065
yibF SPA3535 putative glutathione transferasechromosome CDS3662190 609 - 0.55665
yifB SPA3738 putative magnesium chelatase, subunit ChlIchromosome CDS3882598 1437 - 0.5254
yjjW SPA4379 hypothetical proteinchromosome CDS4551355 864 - 0.561343
yliJ SPA1900 glutathione s-transferase family proteinchromosome CDS1975707 627 + 0.550239
yqjG SPA3102 hypothetical proteinchromosome CDS3208952 987 + 0.522796
yqjI SPA3083 hypothetical proteinchromosome CDS3190619 645 + 0.536434
 
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA t2589 hypothetical proteinchromosome CDS2668026 291 - 0.43299
NA t2461 probable peroxidasechromosome CDS2530220 603 + 0.533997
NA t0679 glutathione-S-transferase-family proteinchromosome CDS764731 645 + 0.56124
NA t0516 putative glutathione-S transferasechromosome CDS589420 645 + 0.567442
NA t0713 putative hydrolasechromosome CDS799810 1005 - 0.58607
NA t1170 methionine sulfoxide reductase Bchromosome CDS1237879 444 + 0.511261
NA t2852 hypothetical proteinchromosome CDS2929403 672 - 0.514881
NA t4188 cytochrome c-type biogenesis proteinchromosome CDS4351326 513 + 0.555556
NA t1955 putative lipoproteinchromosome CDS2005745 762 - 0.507874
NA t4193 putative membrane-bound beta-hydroxylasechromosome CDS4357620 909 - 0.508251
NA t1014 hypothetical proteinchromosome CDS1098299 615 - 0.430894
NA t4173 putative glutathione S transferasechromosome CDS4334906 669 + 0.547085
NA t4362 hypothetical proteinchromosome CDS4517443 1674 - 0.462963
NA t1852 hypothetical proteinchromosome CDS1911520 1761 + 0.536627
NA t2654 hypothetical proteinchromosome CDS2741707 456 + 0.565789
NA t4608 hypothetical proteinchromosome CDS4758275 864 - 0.560185
NA t2359 hypothetical proteinchromosome CDS2425538 918 + 0.546841
NA t3835 putative glutathione transferasechromosome CDS3958804 609 + 0.555008
NA t4187 cytochrome c-type biogenesis proteinchromosome CDS4349600 1737 + 0.594128
NA t1128 putative heat shock proteinchromosome CDS1202658 471 + 0.443737
NA t2997 hypothetical proteinchromosome CDS3088099 759 + 0.54809
NA t3153 hypothetical proteinchromosome CDS3241499 987 + 0.522796
NA t3135 hypothetical proteinchromosome CDS3223156 645 + 0.533333
NA t4268 hypothetical proteinchromosome CDS4432661 1479 + 0.476673
NA t1240 hypothetical proteinchromosome CDS1309599 1272 + 0.535377
NA t0515 putative glutathione-S transferasechromosome CDS588630 648 - 0.527778
NA t3194 putative proteasechromosome CDS3282935 996 + 0.584337
NA t1238 hypothetical proteinchromosome CDS1307374 1488 + 0.522177
NA t3024 hypothetical proteinchromosome CDS3111655 276 + 0.463768
NA t1239 putative ABC transport ATP-binding subunitchromosome CDS1308878 747 + 0.522088
NA t3995 hypothetical proteinchromosome CDS4145213 576 - 0.536458
NA t3128 possible glycoproteasechromosome CDS3215809 1014 - 0.576923
NA t1513 putative peptidasechromosome CDS1569123 1965 - 0.527735
NA t2295 hypothetical proteinchromosome CDS2366335 441 + 0.544218
NA t1904 putative prophage antitermination proteinchromosome CDS1956593 798 - 0.464912
NA t1571 putative thiol peroxidasechromosome CDS1630362 558 - 0.439068
NA t0670 hypothetical proteinchromosome CDS757166 246 - 0.398374
NA t2360 hypothetical proteinchromosome CDS2426452 453 + 0.602649
NA t0029 hypothetical proteinchromosome CDS31278 846 + 0.544917
NA t3061 possible transferasechromosome CDS3145816 867 + 0.546713
NA t2591 ClpB-like proteinchromosome CDS2668402 2664 - 0.590465
NA t3551 hypothetical proteinchromosome CDS3652138 1041 - 0.56292
NA t1629 putative proteasechromosome CDS1688560 1047 - 0.542502
NA t0734 hypothetical proteinchromosome CDS814284 444 + 0.36036
NA t1314 hypothetical proteinchromosome CDS1375513 1122 + 0.576649
NA t0720 putative proteasechromosome CDS806419 1362 - 0.547724
NA t1454 hydrogenase isoenzyme formation proteinchromosome CDS1497300 300 - 0.56
NA t1057 hypothetical proteinchromosome CDS1141072 696 + 0.606322
aat t1979 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS2038959 705 + 0.570213
ahpC t2260 alkyl hydroperoxide reductase c22 proteinchromosome CDS2325972 564 - 0.503546
ahpF t2259 alkyl hydroperoxide reductase F52A protein subunit Fchromosome CDS2324165 1566 - 0.552363
bcp t0368 bacterioferritin comigratory proteinchromosome CDS438429 471 - 0.481953
btuE t1222 putative glutathione peroxidasechromosome CDS1289086 552 + 0.496377
cbpA t1808 curved DNA-binding proteinchromosome CDS1870805 921 + 0.534202
ccmA t3699 heme exporter protein A2chromosome CDS3815625 618 + 0.728155
ccmA t0610 heme exporter protein A1chromosome CDS694100 618 + 0.728155
ccmB t3700 heme exporter protein B2chromosome CDS3816239 660 + 0.701515
ccmB t0611 heme exporter protein B1chromosome CDS694714 660 + 0.701515
ccmC t3701 heme exporter protein C2chromosome CDS3816941 747 + 0.650602
ccmC t0612 heme exporter protein C1chromosome CDS695425 738 + 0.651762
ccmE t0614 cytochrome c-type biogenesis protein E1chromosome CDS696368 480 + 0.65625
ccmE t3703 cytochrome c-type biogenesis protein E2chromosome CDS3817893 480 + 0.65625
ccmF t0615 cytochrome c-type biogenesis protein F1chromosome CDS696844 1932 + 0.678571
ccmF t3704 cytochrome c-type biogenesis protein F2chromosome CDS3818369 1932 + 0.678571
ccmH t3706 cytochrome c-type biogenesis protein H2chromosome CDS3820851 1044 + 0.681035
ccmH t0617 cytochrome c-type biogenesis protein H1chromosome CDS699326 1044 + 0.681035
clpA t1988 ATP-dependent Clp protease ATP-binding subunit ClpAchromosome CDS2044404 2277 - 0.541063
clpB t2616 ClpB proteinchromosome CDS2693220 2574 - 0.534965
clpP t2412 ATP-dependent Clp protease proteolytic subunitchromosome CDS2485120 624 - 0.511218
clpX t2411 ATP-dependent protease ATP-binding subunitchromosome CDS2483597 1272 - 0.53066
cydC t1978 transport ATP-binding protein CydCchromosome CDS2037193 1722 + 0.572009
cydD t1977 transport ATP-binding protein CydDchromosome CDS2035426 1767 + 0.566497
cyoE t2421 protoheme IX farnesyltransferasechromosome CDS2494709 891 + 0.531987
cysU t0415 sulphate transport system permease protein CysTchromosome CDS489071 834 + 0.556355
degQ t3264 serine proteasechromosome CDS3354520 1368 + 0.539474
degS t3265 serine proteasechromosome CDS3355980 1071 + 0.542484
djlA t0097 Dna-J like membrane chaperone proteinchromosome CDS108213 813 + 0.539975
dnaJ t0013 DnaJ proteinchromosome CDS13596 1140 + 0.541228
dnaK t0012 molecular chaperone DnaKchromosome CDS11594 1917 + 0.527387
dsbA t3113 disulfide isomerasechromosome CDS3199315 672 + 0.46131
dsbA t3623 thiol:disulfide interchange proteinchromosome CDS3726168 624 - 0.501603
dsbB t1070 disulfide bond formation protein Bchromosome CDS1150486 531 - 0.544256
dsbB t3114 putative disulfide oxidoreductasechromosome CDS3200001 678 + 0.50885
dsbC t2961 thiol:disulfide interchange proteinchromosome CDS3051705 714 - 0.504202
dsbD t4374 thiol:disulfide interchange protein precursorchromosome CDS4526778 1704 - 0.562793
dsbE t0616 thiol:disulfide interchange proteinchromosome CDS698772 558 + 0.629032
dsbE t3705 thiol:disulfide interchange proteinchromosome CDS3820297 558 + 0.629032
dsbG t2261 thiol:disulfide interchange protein DsbG precursorchromosome CDS2326975 747 + 0.497992
fdhE t3586 formate dehydrogenase accessory protein FdhEchromosome CDS3687785 930 + 0.580645
fklB t4448 probable FkbP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4592336 663 + 0.559578
fkpA t4052 FKBP-type peptidyl-prolyl isomerasechromosome CDS4208461 819 + 0.5116
fkpB t0050 probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerasechromosome CDS57341 450 + 0.546667
flgA t1747 flagellar basal body P-ring biosynthesis proteinchromosome CDS1812818 660 + 0.580303
flgJ t1738 flagellar biosynthesis proteinchromosome CDS1805505 951 - 0.564669
flgN t1749 flagella synthesis protein FlgNchromosome CDS1813867 423 + 0.541371
fliJ t0904 flagellar proteinchromosome CDS1001138 444 - 0.513514
fliS t0916 flagellar protein FliSchromosome CDS1011706 408 - 0.497549
ftsH t3213 cell division proteinchromosome CDS3304708 1935 - 0.55814
glnD t0215 PII uridylyl-transferasechromosome CDS247143 2673 - 0.560419
glnE t3121 adenyl-transferasechromosome CDS3207036 2844 - 0.57384
groEL t4382 chaperonin GroELchromosome CDS4534507 1647 + 0.544627
groES t4381 co-chaperonin GroESchromosome CDS4534170 294 + 0.472789
grpE t2636 heat shock protein GrpEchromosome CDS2712720 591 - 0.532995
grxA t2024 glutaredoxin 1chromosome CDS2081327 264 + 0.439394
grxB t1755 glutaredoxin 2chromosome CDS1819911 648 + 0.466049
grxC t3817 glutaredoxin 3chromosome CDS3937837 252 + 0.511905
gst t1319 glutathione S-transferasechromosome CDS1379916 606 - 0.514852
hflC t4415 HflC proteinchromosome CDS4566963 1005 + 0.542289
hflK t4414 HflK proteinchromosome CDS4565701 1260 + 0.563492
hopD t4063 Type III leader peptidasechromosome CDS4216773 468 - 0.523504
hscA t0317 chaperone protein HscAchromosome CDS360774 1851 + 0.592112
hscB t0316 co-chaperone HscBchromosome CDS360246 516 + 0.544574
hslJ t1551 heat shock proteinchromosome CDS1608645 411 + 0.513382
hslO t4008 Hsp33-like chaperoninchromosome CDS4160875 879 - 0.549488
hslS t3710 heat shock protein Bchromosome CDS3824409 429 + 0.51049
hslT t3709 heat shock protein Achromosome CDS3823886 414 + 0.5
hslU t3527 ATP-dependent protease ATP-binding subunitchromosome CDS3630613 1332 + 0.527778
hslV t3526 ATP-dependent protease peptidase subunitchromosome CDS3630073 531 + 0.54049
htpG t2373 heat shock protein 90chromosome CDS2442451 1899 - 0.529226
htpX t1034 heat shock protein HtpXchromosome CDS1118593 882 + 0.528345
htrA t0210 protease DO precursor; heat shock protein HtrAchromosome CDS241491 1428 + 0.55042
hyaE t1453 hydrogenase-1 operon protein HyaE2chromosome CDS1496893 411 - 0.518248
hyaE t1086 hydrogenase-1 operon protein HyaEchromosome CDS1170057 405 - 0.582716
hybG t3064 hydrogenase-2 component proteinchromosome CDS3148588 249 - 0.526104
hypB t2757 hydrogenase isoenzyme formation protein HypBchromosome CDS2838971 873 + 0.578465
hypC t2758 hydrogenase isoenzyme formation protein HypCchromosome CDS2839834 273 + 0.553114
hypD t2759 hydrogenase isoenzyme formation protein HypDchromosome CDS2840106 1122 + 0.581996
hypE t2760 hydrogenase isoenzyme formation protein HypEchromosome CDS2841266 969 + 0.591331
hypf t2744 hydrogenase maturation proteinchromosome CDS2826484 2241 - 0.60241
lon t2410 Lon proteasechromosome CDS2481057 2355 - 0.538854
msrA t4462 methionine sulfoxide reductase Achromosome CDS4607197 639 - 0.550861
nrdG t4485 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS4630934 465 - 0.55914
nrdH t2702 putative glutaredoxinchromosome CDS2790610 246 + 0.560976
nrfG t4189 NrfG proteinchromosome CDS4351835 621 + 0.565217
osmC t1478 osmotically inducible protein Cchromosome CDS1526991 432 - 0.513889
pcm t2827 protein-L-isoaspartate O-methyltransferasechromosome CDS2903288 627 - 0.566188
pflA t1964 pyruvate formate-lyase 1 activating enzymechromosome CDS2017077 798 + 0.486216
phnU t2436 probable membrane component of 2-aminoethylphosphonate transporterchromosome CDS2507872 870 + 0.572414
pilU t4249 prepilin peptidasechromosome CDS4417675 663 + 0.536953
ppiA t4033 peptidyl-prolyl cis-trans isomerasechromosome CDS4192455 573 + 0.502618
ppiB t2325 peptidyl-prolyl cis-trans isomerase Bchromosome CDS2388932 495 + 0.492929
ppiC t3388 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3490018 282 + 0.457447
ppiD t2408 peptidyl-prolyl cis-trans isomerase Dchromosome CDS2478414 1872 - 0.523504
prgI t2775 pathogenicity 1 island effector proteinchromosome CDS2853946 243 - 0.444444
ptr t2903 protease III precursorchromosome CDS2991078 2889 - 0.518172
radA t4618 putative DNA repair proteinchromosome CDS4768994 1383 + 0.597252
rpsV t1480 30S ribosomal protein S22chromosome CDS1528244 144 + 0.493056
scsB t1806 membrane protein, suppressor for copper-sensitivity B precursorchromosome CDS1868272 1887 - 0.581346
scsC t1805 secreted copper-sensitivity suppressor Cchromosome CDS1867652 624 - 0.519231
scsD t1804 secreted copper-sensitivity suppressor Dchromosome CDS1867156 507 - 0.623274
slyD t4050 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4207246 591 + 0.558376
smpB t2642 SsrA-binding proteinchromosome CDS2717618 483 + 0.496894
sppA t1174 protease IVchromosome CDS1240788 1857 - 0.558428
sspA t3259 stringent starvation protein Achromosome CDS3350558 639 - 0.521127
surA t0095 survival protein SurA precursorchromosome CDS104265 1287 - 0.54157
tig t2413 trigger factorchromosome CDS2485990 1299 - 0.52194
tpx t1586 thiol peroxidasechromosome CDS1646262 507 + 0.497041
trxA t3381 thioredoxinchromosome CDS3482122 330 - 0.490909
trxB t1976 thioredoxin reductasechromosome CDS2034344 969 + 0.546956
ybbN t2356 thioredoxin-like proteinchromosome CDS2423008 855 + 0.549708
ybeL t2214 hypothetical proteinchromosome CDS2279283 474 - 0.556962
ybiY t2045 putative pyruvate formate-lyase 3 activating enzymechromosome CDS2104060 900 + 0.556667
ydhD t1301 hypothetical proteinchromosome CDS1365682 348 + 0.502874
yedF t0911 hypothetical proteinchromosome CDS1007645 234 - 0.491453
yegD t0747 hypothetical proteinchromosome CDS832130 1353 - 0.592757
yfiG t0261 thioredoxin 2chromosome CDS300176 420 - 0.530952
yhbV t3195 hypothetical proteinchromosome CDS3283939 879 + 0.562002
yhfA t4040 hypothetical proteinchromosome CDS4198912 405 + 0.530864
yhhP t3944 hypothetical proteinchromosome CDS4083893 246 + 0.54065
yliJ t2034 glutathione s-transferase family proteinchromosome CDS2091412 627 + 0.54386
 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STY4570 hypothetical proteinchromosome CDS4448011 1479 + 0.476673
NA STY2365 putative proteasechromosome CDS2196156 1362 + 0.547724
NA STY3457 putative proteasechromosome CDS3297440 996 + 0.584337
NA STY1397 putative thiol peroxidasechromosome CDS1350263 558 + 0.44086
NA STY3080 hypothetical proteinchromosome CDS2943509 672 - 0.514881
NA STY2579 putative glutathione-S transferasechromosome CDS2415435 648 + 0.527778
NA STY1751 hypothetical proteinchromosome CDS1670260 1272 - 0.535377
NA STY0033 hypothetical proteinchromosome CDS31278 846 + 0.544917
NA STY3387 possible glycoproteasechromosome CDS3230314 1014 - 0.576923
NA STY3266 hypothetical proteinchromosome CDS3126160 276 + 0.467391
NA STY3413 hypothetical proteinchromosome CDS3256004 987 + 0.522796
NA STY1950 hypothetical proteinchromosome CDS1839365 696 - 0.606322
NA STY2351 hypothetical proteinchromosome CDS2189209 444 - 0.36036
NA STY2406 glutathione-S-transferase-family proteinchromosome CDS2238562 645 - 0.55969
NA HCM1.40c hypothetical proteinpHCM1 CDS18445 468 - 0.474359
NA STY1824 methionine sulfoxide reductase Bchromosome CDS1742809 444 - 0.511261
NA STY4479 cytochrome c-type biogenesis proteinchromosome CDS4364950 1737 + 0.594128
NA STY1036 putative prophage antitermination proteinchromosome CDS1023687 798 + 0.464912
NA STY2372 putative hydrolasechromosome CDS2203122 1005 + 0.58607
NA STY1753 hypothetical proteinchromosome CDS1672269 1488 - 0.521505
NA HCM1.276 putative peptidasepHCM1 CDS209530 1182 + 0.505922
NA STY1871 putative heat shock proteinchromosome CDS1778004 471 - 0.443737
NA STY2578 putative glutathione-S transferasechromosome CDS2414648 645 - 0.567442
NA HCM2.0023c putative glutaredoxinpHCM2 CDS18262 246 - 0.50813
NA STY4916 hypothetical proteinchromosome CDS4775351 864 - 0.560185
NA HCM1.111 hypothetical proteinpHCM1 CDS86888 1053 + 0.425451
NA HCM2.0006c putative lipoproteinpHCM2 CDS1647 843 - 0.5172
NA STY0979 putative lipoproteinchromosome CDS974571 762 + 0.507874
NA STY4480 cytochrome c-type biogenesis proteinchromosome CDS4366676 513 + 0.555556
NA STY3803 hypothetical proteinchromosome CDS3666475 1041 - 0.56292
NA STY4671 hypothetical proteinchromosome CDS4534634 1674 - 0.462963
NA STY4112 putative glutathione transferasechromosome CDS3973306 609 + 0.555008
NA STY2002 hypothetical proteinchromosome CDS1882219 615 + 0.430894
NA STY2415 hypothetical proteinchromosome CDS2246526 246 + 0.398374
NA STY3237 hypothetical proteinchromosome CDS3102604 759 + 0.54809
NA STY1334 putative proteasechromosome CDS1291577 1047 + 0.542502
NA STY1752 putative ABC transport ATP-binding subunitchromosome CDS1671506 747 - 0.522088
NA STY1528 hydrogenase isoenzyme formation proteinchromosome CDS1484326 300 + 0.56
NA HCM1.254c putative outer membrane proteinpHCM1 CDS187527 810 - 0.475309
NA STY3311 possible transferasechromosome CDS3160321 867 + 0.546713
NA HCM1.160 hypothetical proteinpHCM1 CDS118271 237 + 0.620253
NA STY0440 probable peroxidasechromosome CDS450278 603 - 0.533997
NA STY4465 putative glutathione S transferasechromosome CDS4350256 669 + 0.547085
NA HCM1.61c hypothetical proteinpHCM1 CDS39594 708 - 0.420904
NA STY0547 hypothetical proteinchromosome CDS554646 918 - 0.546841
NA HCM1.264c putative pilus assembly proteinpHCM1 CDS197700 1047 - 0.424069
NA STY0615 hypothetical proteinchromosome CDS614326 441 - 0.544218
NA STY1089 hypothetical proteinchromosome CDS1067533 1761 - 0.536627
NA HCM1.119 hypothetical proteinpHCM1 CDS93966 966 + 0.403727
NA STY0546 hypothetical proteinchromosome CDS554197 453 - 0.602649
NA STY4285 hypothetical proteinchromosome CDS4160566 576 - 0.536458
NA HCM1.258c putative thiol:disulfide interchange proteinpHCM1 CDS189976 750 - 0.481333
NA STY4485 putative membrane-bound beta-hydroxylasechromosome CDS4372970 909 - 0.508251
NA STY3393 hypothetical proteinchromosome CDS3237661 645 + 0.533333
NA STY0294 ClpB-like proteinchromosome CDS309016 2664 + 0.590465
NA STY0296 hypothetical proteinchromosome CDS311765 291 + 0.43299
NA HCM1.75 putative plasmid transfer proteinpHCM1 CDS49422 858 + 0.426573
NA STY1676 hypothetical proteinchromosome CDS1604502 1122 - 0.576649
NA STY1460 putative peptidasechromosome CDS1410094 1965 + 0.527735
aat STY0953 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS941414 705 - 0.570213
ahpC STY0653 alkyl hydroperoxide reductase c22 proteinchromosome CDS654566 564 + 0.503546
ahpF STY0655 alkyl hydroperoxide reductase F52A protein (subunit F)chromosome CDS655371 1566 + 0.553001
bcp STY2729 bacterioferritin comigratory proteinchromosome CDS2565950 471 + 0.481953
btuE STY1769 putative glutathione peroxidase/vitamin B12 transport periplasmic protein BtuEchromosome CDS1691493 552 - 0.496377
cbpA STY1148 curved DNA-binding proteinchromosome CDS1109088 921 - 0.534202
ccmA1 STY2480 heme exporter protein A1chromosome CDS2309996 618 - 0.728155
ccmA2 STY3959 heme exporter protein A2chromosome CDS3830135 618 + 0.728155
ccmB1 STY2479 heme exporter protein B1chromosome CDS2309340 660 - 0.701515
ccmB2 STY3960 heme exporter protein B2chromosome CDS3830752 657 + 0.701674
ccmC1 STY2478 heme exporter protein C1chromosome CDS2308551 738 - 0.651762
ccmC2 STY3961 heme exporter protein C2chromosome CDS3831451 747 + 0.650602
ccmE1 STY2476 cytochrome c-type biogenesis protein E1chromosome CDS2307866 480 - 0.65625
ccmE2 STY3963 cytochrome c-type biogenesis protein E2chromosome CDS3832403 480 + 0.65625
ccmF1 STY2475 cytochrome c-type biogenesis protein F1chromosome CDS2305938 1932 - 0.678571
ccmF2 STY3964 cytochrome c-type biogenesis protein F2chromosome CDS3832879 1932 + 0.678571
ccmH1 STY2473 cytochrome c-type biogenesis protein H1chromosome CDS2304344 1044 - 0.681035
ccmH2 STY3966 cytochrome c-type biogenesis protein H2chromosome CDS3835361 1044 + 0.681035
clpA STY0943 ATP-dependent Clp protease ATP-binding subunit ClpAchromosome CDS934397 2277 + 0.541502
clpB STY2849 ClpB protein (heat shock protein f84.1)chromosome CDS2717996 2574 - 0.534965
clpP STY0490 ATP-dependent Clp protease proteolytic subunitchromosome CDS495358 624 + 0.511218
clpX STY0491 ATP-dependent protease ATP-binding subunitchromosome CDS496233 1272 + 0.53066
cydC STY0954 transport ATP-binding protein CydCchromosome CDS942163 1722 - 0.572009
cydD STY0955 transport ATP-binding protein CydDchromosome CDS943885 1767 - 0.566497
cyoE STY0481 protoheme IX farnesyltransferasechromosome CDS485502 891 - 0.531987
cysU STY2680 sulphate transport system permease protein CysTchromosome CDS2514808 834 - 0.556355
degQ STY3528 serine proteasechromosome CDS3369026 1368 + 0.539474
degS STY3529 serine proteasechromosome CDS3370486 1071 + 0.542484
djlA STY0109 Dna-J like membrane chaperone proteinchromosome CDS108222 813 + 0.539975
dnaJ STY0013 DnaJ proteinchromosome CDS13596 1140 + 0.541228
dnaK STY0012 molecular chaperone DnaKchromosome CDS11594 1917 + 0.527387
dsbA STY3371 disulfide isomerasechromosome CDS3213820 672 + 0.46131
dsbA STY3883 thiol:disulfide interchange proteinchromosome CDS3740516 624 - 0.501603
dsbB STY3372 putative disulfide oxidoreductasechromosome CDS3214506 678 + 0.50885
dsbB STY1936 disulfide bond formation protein Bchromosome CDS1830116 531 + 0.544256
dsbC STY3199 thiol:disulfide interchange proteinchromosome CDS3066210 714 - 0.504202
dsbD STY4682 thiol:disulfide interchange protein precursorchromosome CDS4543876 1704 - 0.562793
dsbE1 STY2474 thiol:disulfide interchange proteinchromosome CDS2305384 558 - 0.629032
dsbE2 STY3965 thiol:disulfide interchange proteinchromosome CDS3834807 558 + 0.629032
dsbG STY0652 thiol:disulfide interchange protein DsbG precursorchromosome CDS653380 747 - 0.497992
fdhE STY3843 formate dehydrogenase accessory protein FdhEchromosome CDS3702122 930 + 0.580645
fklB STY4753 probable FkbP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4609433 663 + 0.559578
fkpA STY4345 FKBP-type peptidyl-prolyl isomerasechromosome CDS4223814 819 + 0.5116
fkpB STY0057 probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerasechromosome CDS57341 450 + 0.546667
flgA STY1212 flagellar basal body P-ring biosynthesis proteinchromosome CDS1167706 660 - 0.580303
flgJ STY1221 flagellar biosynthesis proteinchromosome CDS1174728 951 + 0.564669
flgN STY1210 flagella synthesis protein FlgNchromosome CDS1166894 423 - 0.541371
fliJ STY2181 flagellar proteinchromosome CDS2024907 444 + 0.513514
fliS STY2169 flagellar protein FliSchromosome CDS2014368 408 + 0.497549
ftsH STY3474 cell division proteinchromosome CDS3319213 1935 - 0.55814
glnD STY0237 PII uridylyl-transferasechromosome CDS247152 2673 - 0.560419
glnE STY3380 adenyl-transferasechromosome CDS3221541 2844 - 0.57384
groEL STY4690 chaperonin GroELchromosome CDS4551605 1647 + 0.544627
groES STY4689 co-chaperonin GroESchromosome CDS4551268 294 + 0.472789
grpE STY2868 heat shock protein GrpE (heat shock protein b25.3) (hsp24)chromosome CDS2737496 591 - 0.532995
grxA STY0905 glutaredoxin 1chromosome CDS899487 264 - 0.439394
grxB STY1203 glutaredoxin 2chromosome CDS1160625 648 - 0.466049
grxC STY4093 glutaredoxin 3chromosome CDS3952338 252 + 0.511905
gst STY1671 glutathione S-transferasechromosome CDS1600615 606 + 0.514852
hflC STY4721 HflC proteinchromosome CDS4584061 1005 + 0.542289
hflK STY4720 HflK proteinchromosome CDS4582799 1260 + 0.563492
hopD STY4356 Type III leader peptidasechromosome CDS4232125 468 - 0.523504
hscA STY2785 chaperone protein HscAchromosome CDS2642225 1851 - 0.592112
hscB STY2786 co-chaperone HscBchromosome CDS2644088 516 - 0.544574
hslJ STY1421 heat shock proteinchromosome CDS1372127 411 - 0.513382
hslO STY4298 Hsp33-like chaperoninchromosome CDS4176228 879 - 0.549488
hslS STY3970 heat shock protein Bchromosome CDS3838919 429 + 0.51049
hslT STY3969 heat shock protein Achromosome CDS3838396 414 + 0.5
hslU STY3779 ATP-dependent protease ATP-binding subunitchromosome CDS3644950 1332 + 0.527778
hslV STY3778 ATP-dependent protease peptidase subunitchromosome CDS3644410 531 + 0.54049
htpG STY0531 heat shock protein 90chromosome CDS536752 1899 + 0.529226
htpX STY1975 heat shock protein HtpXchromosome CDS1861658 882 - 0.528345
htrA STY0231 protease DO precursor; heat shock protein HtrAchromosome CDS241500 1428 + 0.55042
hyaE STY1917 hydrogenase-1 operon protein HyaEchromosome CDS1810671 405 + 0.582716
hyaE2 STY1529 hydrogenase-1 operon protein HyaE2chromosome CDS1484622 411 + 0.518248
hybG STY3314 hydrogenase-2 component proteinchromosome CDS3163093 249 - 0.526104
hypB STY2977 hydrogenase isoenzyme formation protein HypBchromosome CDS2853114 873 + 0.578465
hypC STY2978 hydrogenase isoenzyme formation protein HypCchromosome CDS2853977 273 + 0.553114
hypD STY2979 hydrogenase isoenzyme formation protein HypDchromosome CDS2854249 1122 + 0.581996
hypE STY2980 hydrogenase isoenzyme formation protein HypEchromosome CDS2855409 969 + 0.591331
hypf STY2964 hydrogenase maturation proteinchromosome CDS2840627 2241 - 0.60241
lon STY0492 Lon proteasechromosome CDS497690 2355 + 0.538854
msrA STY4767 methionine sulfoxide reductase Achromosome CDS4624308 639 - 0.550861
nrdG STY4790 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS4648045 465 - 0.55914
nrdH STY2930 putative glutaredoxinchromosome CDS2804753 246 + 0.560976
nrfG STY4481 NrfG proteinchromosome CDS4367185 621 + 0.565217
osmC STY1497 osmotically inducible protein Cchromosome CDS1454503 432 + 0.513889
pcm STY3051 protein-L-isoaspartate O-methyltransferasechromosome CDS2917429 627 - 0.566188
pflA STY0968 pyruvate formate-lyase 1 activating enzymechromosome CDS963203 798 - 0.486216
phnU STY0466 probable membrane component of 2-aminoethylphosphonate transporterchromosome CDS472360 870 - 0.572414
pilU STY4549 prepilin peptidasechromosome CDS4433025 663 + 0.536953
ppiA STY4324 peptidyl-prolyl cis-trans isomerasechromosome CDS4207808 573 + 0.502618
ppiB STY0584 peptidyl-prolyl cis-trans isomerase Bchromosome CDS591675 495 - 0.494949
ppiC STY3647 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3504360 282 + 0.457447
ppiD STY0494 peptidyl-prolyl cis-trans isomerase Dchromosome CDS500816 1872 + 0.523504
prgI STY2994 pathogenicity 1 island effector proteinchromosome CDS2868089 243 - 0.444444
ptr STY3133 protease III precursor (pitrilysin)chromosome CDS3005183 2889 - 0.518172
radA STY4926 putative DNA repair proteinchromosome CDS4786070 1383 + 0.597252
rpsV STY1495 30S ribosomal protein S22chromosome CDS1453538 144 - 0.493056
scsB STY1150 membrane protein, suppressor for copper-sensitivity B precursorchromosome CDS1110655 1887 + 0.580816
scsC STY1151 secreted protein, suppressor for copper-sensitivity C precursorchromosome CDS1112538 624 + 0.519231
scsD STY1152 secreted protein, suppressor for copper-sensitivity Dchromosome CDS1113151 507 + 0.623274
slyD STY4343 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4222599 591 + 0.558376
smpB STY2874 SsrA-binding proteinchromosome CDS2742393 483 + 0.496894
sppA STY1819 protease IVchromosome CDS1738487 1857 + 0.558428
sspA STY3523 stringent starvation protein Achromosome CDS3365064 639 - 0.521127
surA STY0107 survival protein SurA precursorchromosome CDS104274 1287 - 0.54157
tig STY0489 trigger factorchromosome CDS493813 1299 + 0.52194
tpx STY1381 thiol peroxidasechromosome CDS1334414 507 - 0.497041
trxA STY3639 thioredoxinchromosome CDS3496464 330 - 0.490909
trxB STY0956 thioredoxin reductasechromosome CDS945765 969 - 0.546956
ybbN STY0550 thioredoxin-like proteinchromosome CDS557239 855 - 0.549708
ybeL STY0704 hypothetical proteinchromosome CDS701315 474 + 0.556962
ybiY STY0883 putative pyruvate formate-lyase 3 activating enzymechromosome CDS876118 900 - 0.556667
ydhD STY1689 hypothetical proteinchromosome CDS1615107 348 - 0.505747
yedF STY2174 hypothetical proteinchromosome CDS2018610 234 + 0.491453
yegD STY2338 hypothetical proteinchromosome CDS2170454 1353 + 0.592757
yfiG STY2842 thioredoxin 2chromosome CDS2704254 420 + 0.530952
yhbV STY3458 hypothetical proteinchromosome CDS3298444 879 + 0.562002
yhfA STY4332 hypothetical proteinchromosome CDS4214265 405 + 0.530864
yhhP STY4233 hypothetical proteinchromosome CDS4099246 246 + 0.54065
yliJ STY0895 glutathione s-transferase family proteinchromosome CDS889039 627 - 0.54386
 
Salmonella typhimurium LT2, SGSC1412
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
srgA PSLT011 putative thiol-disulfide isomerase or thioredoxinpSLT CDS6671 654 - 0.562691
traD PSLT104 ATP-binding protein/DNA transporterpSLT CDS84323 2244 + 0.543672
 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_2276 putative ATP-dependent proteasechromosome CDS2262022 1761 + 0.51732
NA SBO_1136 hypothetical proteinchromosome CDS1138087 210 + 0.37619
NA SBO_1593 putative transferasechromosome CDS1584836 618 - 0.472492
NA SBO_1494 hypothetical proteinchromosome CDS1471210 1110 + 0.547748
NA SBO_2874 hypothetical proteinchromosome CDS2875713 915 - 0.531148
NA SBO_1411 putative stability/partitioning proteinchromosome CDS1388152 621 - 0.550725
NA SBO_4167 hypothetical proteinchromosome CDS4220361 456 - 0.563596
NA SBO_0920 hypothetical proteinchromosome CDS950291 1005 + 0.559204
aat SBO_0818 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS829532 705 - 0.540426
ahpC SBO_0470 alkyl hydroperoxide reductase, C22 subunitchromosome CDS489464 564 + 0.5
ahpF SBO_0471 alkyl hydroperoxide reductase, F52a subunitchromosome CDS490168 1596 + 0.526942
bcp SBO_2497 bacterioferritin comigratory proteinchromosome CDS2490522 471 + 0.490446
btuE SBO_1418 vitamin B12 transportchromosome CDS1394182 552 + 0.496377
cbpA SBO_2231 curved DNA-binding proteinchromosome CDS2217392 921 + 0.530945
ccmA SBO_2106 ATP binding protein of heme exporter Achromosome CDS2087418 618 + 0.559871
ccmB SBO_2107 heme exporter protein Bchromosome CDS2088032 663 + 0.558069
ccmC SBO_2108 heme exporter protein Cchromosome CDS2088736 738 + 0.554201
ccmE SBO_2110 possible subunit of a heme lyasechromosome CDS2089676 480 + 0.541667
ccmF SBO_2111 cytochrome c-type biogenesis proteinchromosome CDS2090152 1944 + 0.570988
ccmH SBO_2113 possible subunit of heme lyasechromosome CDS2092646 1053 + 0.541311
clpA SBO_0815 ATP-binding component of serine proteasechromosome CDS826068 2277 + 0.528766
clpB SBO_2627 heat shock proteinchromosome CDS2632735 2574 - 0.513597
clpP SBO_0331 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS345525 624 + 0.509615
clpX SBO_0332 ATP-dependent specificity component of clpP serine proteasechromosome CDS346274 1275 + 0.516078
csgA SBO_2026 CsgAchromosome CDS1996140 456 - 0.508772
cydC SBO_0819 ATP-binding component of cytochrome-related transportchromosome CDS830278 1722 - 0.538328
cydD SBO_0820 ATP-binding component of cytochrome-related transportchromosome CDS832000 1767 - 0.533107
cyoE SBO_0322 protoheme IX farnesyltransferasechromosome CDS335661 891 - 0.534231
cysU SBO_2449 sulfate, thiosulfate transport system permease T proteinchromosome CDS2440028 834 - 0.553957
degQ SBO_3155 serine endoproteasechromosome CDS3160366 1368 - 0.517544
degS SBO_3154 proteasechromosome CDS3159209 1068 - 0.525281
dnaJ SBO_0016 chaperone with DnaKchromosome CDS15306 1131 + 0.552608
dnaK SBO_0015 chaperone Hsp70chromosome CDS13301 1917 + 0.511737
dsbA SBO_3872 protein disulfide isomerase Ichromosome CDS3896524 627 + 0.476874
dsbB SBO_1887 DsbBchromosome CDS1872461 531 + 0.525424
dsbC SBO_3099 protein disulfide isomerase IIchromosome CDS3099651 711 + 0.486639
dsbD SBO_4319 thiol:disulfide interchange proteinchromosome CDS4369056 1698 + 0.53828
dsbE SBO_2112 disulfide oxidoreductasechromosome CDS2092092 558 + 0.546595
fdhE SBO_3905 FdhEchromosome CDS3932577 930 - 0.550538
fkpA SBO_3327 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3312557 813 - 0.479705
flgA SBO_1992 assembly of basal-body periplasmic P ringchromosome CDS1965793 660 + 0.524242
flgN SBO_1994 protein of flagellar biosynthesischromosome CDS1966862 417 + 0.47482
fliJ SBO_1065 flagellar fliJ proteinchromosome CDS1076028 444 - 0.529279
fliS SBO_1081 FliSchromosome CDS1090532 411 - 0.501217
glnD SBO_0155 protein PIIchromosome CDS171996 2673 - 0.534979
glnE SBO_2909 glutamine synthetase adenylylating enzymechromosome CDS2911447 2841 - 0.556846
grpE SBO_2749 GrpEchromosome CDS2758885 594 - 0.5
grxA SBO_0783 GrxAchromosome CDS793325 258 - 0.449612
grxB SBO_2000 glutaredoxin 2chromosome CDS1972632 648 + 0.489198
grxC SBO_3616 glutaredoxin 3chromosome CDS3632976 252 - 0.511905
gst SBO_1499 glutathionine S-transferasechromosome CDS1475830 606 - 0.504951
hflB SBO_3204 HflBchromosome CDS3208056 1935 + 0.531783
hflC SBO_4281 protease specific for phage lambda cII repressorchromosome CDS4329975 1005 - 0.528358
hflK SBO_4282 protease specific for phage lambda cII repressorchromosome CDS4330982 1260 - 0.562698
hscA SBO_2550 HscAchromosome CDS2552475 1851 - 0.574824
hslJ SBO_1687 heat shock protein hslJchromosome CDS1671139 423 + 0.468085
hslU SBO_3948 heat shock protein hslVU, ATPase subunitchromosome CDS3973992 1332 - 0.523273
hslV SBO_3949 heat shock protein hslVU, proteasome-related peptidase subunitchromosome CDS3975333 531 - 0.525424
htpG SBO_0373 chaperone Hsp90chromosome CDS388370 1875 + 0.529067
htpX SBO_1244 heat shock proteinchromosome CDS1238351 882 - 0.530612
htrA SBO_0150 periplasmic serine protease Dochromosome CDS166913 1425 + 0.542456
hyaE SBO_2255 HyaEchromosome CDS2243563 399 - 0.56391
hybG SBO_2873 HybGchromosome CDS2875342 249 + 0.526104
hypB SBO_2793 guanine-nucleotide binding proteinchromosome CDS2801362 873 - 0.553265
hypC SBO_2792 HypCchromosome CDS2801099 273 - 0.553114
hypD SBO_2791 HypDchromosome CDS2799978 1122 - 0.551693
hypE SBO_2790 HypEchromosome CDS2798971 969 - 0.560372
hypF SBO_2806 transcriptional regulatory proteinchromosome CDS2814421 2253 + 0.579228
ibpA SBO_3684 heat shock proteinchromosome CDS3699610 414 + 0.47343
ibpB SBO_3685 heat shock proteinchromosome CDS3700129 435 + 0.487356
lon SBO_0333 DNA-binding, ATP-dependent protease Lachromosome CDS347736 2355 + 0.523567
mopA SBO_4313 GroELchromosome CDS4361426 1647 - 0.529447
mopB SBO_4314 GroESchromosome CDS4363116 294 - 0.486395
msrA SBO_4224 peptide methionine sulfoxide reductasechromosome CDS4281020 639 + 0.543036
nrdG SBO_4209 anaerobic ribonucleotide reductase activating proteinchromosome CDS4262067 465 + 0.505376
nrdH SBO_2844 glutaredoxin-like proteinchromosome CDS2852563 246 - 0.53252
nrfE SBO_4105 formate-dependent nitrite reductase possible assembly proteinchromosome CDS4147780 1659 + 0.572634
nrfF SBO_4106 NrfGchromosome CDS4149431 384 + 0.526042
nrfG SBO_4107 NrfGchromosome CDS4149811 597 + 0.517588
osmC SBO_1575 osmotically inducible proteinchromosome CDS1569852 432 - 0.497685
pcm SBO_2777 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS2783760 627 + 0.54067
pflA SBO_2188 pyruvate formate lyase activating enzyme 1chromosome CDS2164848 741 - 0.504723
pflC SBO_3971 probable pyruvate formate lyase activating enzyme 2chromosome CDS4005090 879 + 0.54835
ppiA SBO_3345 peptidyl-prolyl cis-trans isomerase Achromosome CDS3330469 573 - 0.514834
ppiB SBO_0418 peptidyl-prolyl cis-trans isomerase Bchromosome CDS434077 495 + 0.476768
ppiC SBO_3786 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3807683 282 - 0.514184
ptr SBO_2711 protease IIIchromosome CDS2718730 2889 - 0.508827
rpsV SBO_1577 30S ribosomal subunit protein S22chromosome CDS1570946 138 + 0.449275
slpA SBO_0027 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS25862 450 + 0.54
slyD SBO_3329 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3313857 591 - 0.551607
smpB SBO_2755 small protein Bchromosome CDS2763666 483 + 0.513458
sms SBO_4452 probable ATP-dependent proteasechromosome CDS4504137 1383 + 0.574837
sohB SBO_1794 putative proteasechromosome CDS1773322 1050 - 0.502857
sppA SBO_1321 protease IVchromosome CDS1305019 1857 - 0.519117
sspA SBO_3160 stringent starvation protein Achromosome CDS3165055 639 + 0.536776
surA SBO_0042 survival proteinchromosome CDS42478 1287 - 0.540793
tig SBO_0330 trigger factorchromosome CDS343980 1299 + 0.510393
tpx SBO_1746 thiol peroxidasechromosome CDS1725274 507 + 0.514793
trxA SBO_3791 thioredoxin 1chromosome CDS3815193 384 + 0.497396
trxB SBO_0821 thioredoxin reductasechromosome CDS833889 966 - 0.526915
trxC SBO_2614 putative thioredoxin-like proteinchromosome CDS2618417 420 + 0.490476
yabH SBO_0044 putative DNA binding proteinchromosome CDS46426 816 + 0.529412
ybaU SBO_0335 putative protease maturation proteinchromosome CDS350763 1872 + 0.520833
ybbJ SBO_0390 hypothetical proteinchromosome CDS408223 456 - 0.574561
ybbK SBO_0391 putative proteasechromosome CDS408678 918 - 0.523965
ybeS SBO_0510 putative enzyme of polynucleotide modificationchromosome CDS527825 1428 + 0.481793
ybeW SBO_0513 putative dnaK proteinchromosome CDS531014 1671 - 0.499701
ybiY SBO_0714 putative pyruvate formate-lyase 2 activating enzymechromosome CDS732287 927 - 0.538296
ydhD SBO_1479 hypothetical proteinchromosome CDS1455557 348 + 0.525862
yeaA SBO_1317 hypothetical proteinchromosome CDS1302296 414 + 0.480676
yeaZ SBO_1281 hypothetical proteinchromosome CDS1270321 696 + 0.557471
yedF SBO_1076 hypothetical proteinchromosome CDS1086532 234 - 0.482906
yeeD SBO_0836 hypothetical proteinchromosome CDS852439 228 - 0.513158
yegD SBO_0896 putative heat shock proteinchromosome CDS918406 1416 + 0.560734
yegQ SBO_0908 hypothetical proteinchromosome CDS937734 1362 + 0.540382
yfcF SBO_2336 hypothetical proteinchromosome CDS2327971 633 - 0.519747
yfcG SBO_2337 putative S-transferasechromosome CDS2328739 648 + 0.510802
yfhE SBO_2551 hypothetical proteinchromosome CDS2554342 516 - 0.517442
ygcF SBO_2656 hypothetical proteinchromosome CDS2660021 672 - 0.517857
yggG SBO_3053 hypothetical proteinchromosome CDS3050873 885 - 0.524294
yggX SBO_3028 hypothetical proteinchromosome CDS3029173 276 - 0.474638
ygjD SBO_2922 putative O-sialoglycoprotein endopeptidasechromosome CDS2924722 1014 - 0.574951
yhbU SBO_3224 putative collagenasechromosome CDS3232613 981 - 0.576962
yhbV SBO_3223 hypothetical proteinchromosome CDS3231726 897 - 0.555184
yhfA SBO_3336 hypothetical proteinchromosome CDS3321370 252 - 0.507937
yhgI SBO_3403 hypothetical proteinchromosome CDS3388477 576 + 0.526042
yhhP SBO_3467 hypothetical proteinchromosome CDS3458141 246 - 0.53252
yibF SBO_3592 putative S-transferasechromosome CDS3602249 609 - 0.528736
yifB SBO_3777 putative 2-component regulatorchromosome CDS3796795 1413 - 0.514508
yiiF SBO_3904 hypothetical proteinchromosome CDS3932005 243 + 0.45679
yjhS SBO_4359 hypothetical proteinchromosome CDS4410400 981 - 0.4842
yjiC SBO_4376 hypothetical proteinchromosome CDS4429436 831 - 0.392298
yjjW SBO_4440 putative activating enzymechromosome CDS4491956 864 - 0.554398
yliJ SBO_0734 putative transferasechromosome CDS751846 579 - 0.533679
ynhC SBO_1449 hypothetical proteinchromosome CDS1426504 1272 + 0.529088
ynhD SBO_1448 putative ATP-binding component of a transport systemchromosome CDS1425783 747 + 0.504685
ynhE SBO_1447 hypothetical proteinchromosome CDS1424247 1527 + 0.519319
yqjG SBO_2969 putative transferasechromosome CDS2973244 876 + 0.511416
yrfI SBO_3388 hypothetical proteinchromosome CDS3371792 885 + 0.522034
 
Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SDY_1863 hypothetical proteinchromosome CDS1697994 1110 - 0.553153
NA SDY_1951 putative transferasechromosome CDS1774574 609 - 0.472906
NA SDY_2497 hypothetical proteinchromosome CDS2299591 321 - 0.52648
NA SDY_2272 hypothetical proteinchromosome CDS2068030 1005 + 0.555224
NA SDY_3084 hypothetical proteinchromosome CDS2858165 915 - 0.533333
NA SDY_1436 antitermination protein Q homolog of cryptic prophagechromosome CDS1323419 822 + 0.492701
aat SDY_2376 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS2179234 705 + 0.539007
ahpC SDY_0540 alkyl hydroperoxide reductase, C22 subunitchromosome CDS525582 564 + 0.5
ahpF SDY_0541 alkyl hydroperoxide reductase, F52a subunitchromosome CDS526244 1596 + 0.526316
bcp SDY_2669 bacterioferritin comigratory proteinchromosome CDS2460067 471 + 0.494692
btuE SDY_1805 vitamin B12 transport proteinchromosome CDS1642626 552 - 0.490942
cbpA SDY_0974 curved DNA-binding proteinchromosome CDS924045 921 - 0.527687
ccmA SDY_0877 ATP binding protein of heme exporter Achromosome CDS826322 618 + 0.550162
ccmB SDY_0878 heme exporter protein Bchromosome CDS826936 663 + 0.555053
ccmC SDY_0879 heme exporter protein Cchromosome CDS827640 738 + 0.547425
ccmE SDY_0881 cytochrome c biogenesischromosome CDS828580 480 + 0.535417
ccmF SDY_0882 cytochrome c-type biogenesis proteinchromosome CDS829056 1944 + 0.569959
ccmH SDY_0884 possible subunit of heme lyasechromosome CDS831550 1053 + 0.534663
clpA SDY_2379 ATP-binding component of serine proteasechromosome CDS2181125 2277 - 0.524374
clpB SDY_2835 heat shock proteinchromosome CDS2627369 2574 - 0.511267
clpP SDY_0295 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS288947 624 - 0.508013
clpX SDY_0294 ATP-dependent specificity component of clpP serine proteasechromosome CDS287547 1275 - 0.512157
cydC SDY_2375 ATP-binding component of cytochrome-related transportchromosome CDS2177471 1722 + 0.537166
cydD SDY_2374 ATP-binding component of cytochrome-related transport, Zn sensitivechromosome CDS2175704 1767 + 0.532541
cysU SDY_2620 sulfate, thiosulfate transport system permease T proteinchromosome CDS2414180 834 - 0.558753
degQ SDY_3410 serine endoproteasechromosome CDS3164762 1368 + 0.522661
degS SDY_3411 proteasechromosome CDS3166219 1068 + 0.525281
dnaJ SDY_0014 heat shock proteinchromosome CDS14160 1131 + 0.55084
dnaK SDY_0013 chaperone Hsp70chromosome CDS12155 1917 + 0.512259
dsbA SDY_3885 protein disulfide isomerase Ichromosome CDS3616601 627 - 0.476874
dsbB SDY_1222 DsbBchromosome CDS1127260 531 - 0.519774
dsbC SDY_3189 protein disulfide isomerase IIchromosome CDS2955221 711 + 0.483826
dsbD SDY_4441 thiol:disulfide interchange proteinchromosome CDS4154160 1698 - 0.541814
dsbE SDY_0883 disulfide oxidoreductasechromosome CDS830996 558 + 0.541219
fdhE SDY_3852 affects formate dehydrogenase-Nchromosome CDS3585795 930 + 0.547312
fklB SDY_4377 FKBP-type 22KD peptidyl-prolyl cis-trans isomerasechromosome CDS4097338 780 + 0.521795
fkpA SDY_3508 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3243939 795 - 0.480503
flgA SDY_2080 assembly of basal-body periplasmic P ringchromosome CDS1890612 660 + 0.527273
flgJ SDY_2070 FlgJchromosome CDS1882427 942 - 0.542463
fliS SDY_1090 repressor of class 3a and 3b operonschromosome CDS1017681 411 - 0.498783
glnD SDY_0183 protein PIIchromosome CDS186240 2673 - 0.535354
glnE SDY_3236 adenylylating enzyme for glutamine synthetasechromosome CDS2996917 2841 - 0.56107
grpE SDY_2787 GrpEchromosome CDS2581627 594 - 0.5
grxA SDY_0746 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS693847 258 + 0.46124
grxB SDY_2089 glutaredoxin 2chromosome CDS1898185 648 + 0.487654
grxC SDY_4043 glutaredoxin 3chromosome CDS3779972 252 - 0.52381
gst SDY_1858 glutathionine S-transferasechromosome CDS1693878 606 + 0.50165
hflB SDY_3359 HflBchromosome CDS3116406 1935 - 0.534367
hflC SDY_4414 protease specific for phage lambda cII repressorchromosome CDS4129523 1005 - 0.527363
hflK SDY_4415 protease specific for phage lambda cII repressorchromosome CDS4130530 1260 - 0.564286
hscA SDY_2722 HscAchromosome CDS2520692 1851 - 0.576985
hslU SDY_3806 heat shock protein hslVU, ATPase subunitchromosome CDS3545007 1332 + 0.524024
hslV SDY_3805 heat shock protein hslVU, proteasome-related peptidase subunitchromosome CDS3544467 531 + 0.516008
htpG SDY_0446 chaperone Hsp90chromosome CDS436521 1875 - 0.524267
htpX SDY_1977 heat shock proteinchromosome CDS1796191 882 - 0.53288
htrA SDY_0178 periplasmic serine protease Dochromosome CDS181864 1425 + 0.537544
hyaE SDY_0951 processor of HyaA and HyaB proteinschromosome CDS898998 399 + 0.553885
hybG SDY_3083 hydrogenase-2 operon proteinchromosome CDS2857794 249 + 0.526104
hypB SDY_2924 guanine-nucleotide binding proteinchromosome CDS2705500 873 + 0.550974
hypC SDY_2925 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS2706363 273 + 0.549451
hypD SDY_2926 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS2706635 1122 + 0.551693
hypE SDY_2927 HypEchromosome CDS2707795 969 + 0.575851
hypF SDY_2909 transcriptional regulatory proteinchromosome CDS2689899 2253 - 0.57257
ibpA SDY_4173 heat shock proteinchromosome CDS3906871 414 - 0.475845
ibpB SDY_4172 heat shock proteinchromosome CDS3906331 435 - 0.48046
lon SDY_0293 DNA-binding, ATP-dependent protease Lachromosome CDS284921 2439 - 0.514965
mopA SDY_4449 GroELchromosome CDS4162613 1647 + 0.530662
mopB SDY_4448 GroESchromosome CDS4162276 294 + 0.493197
msrA SDY_4456 peptide methionine sulfoxide reductasechromosome CDS4169134 639 - 0.536776
mxiG SDY_P174 MxiGpSD1_197 CDS140910 1116 + 0.30914
nrdG SDY_4256 anaerobic ribonucleotide reductase activating proteinchromosome CDS3985429 465 - 0.505376
nrdH SDY_2866 glutaredoxin-like proteinchromosome CDS2651587 246 + 0.53252
osmC SDY_1610 osmotically inducible proteinchromosome CDS1472720 432 + 0.50463
pcm SDY_2942 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS2722008 627 - 0.539075
pflA SDY_2359 pyruvate formate lyase activating enzyme 1chromosome CDS2154900 741 + 0.496626
pflC SDY_3787 probable pyruvate formate lyase activating enzyme 2chromosome CDS3520458 879 + 0.542662
ppiA SDY_3525 peptidyl-prolyl cis-trans isomerase Achromosome CDS3258767 573 - 0.509599
ppiB SDY_0277 peptidyl-prolyl cis-trans isomerase Bchromosome CDS271921 495 - 0.474747
ppiC SDY_3973 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3704675 282 + 0.510638
ptr SDY_3038 protease IIIchromosome CDS2812624 2889 - 0.50848
slpA SDY_0050 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS44578 450 + 0.542222
slyD SDY_3510 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3245221 579 - 0.552677
smpB SDY_2793 small protein Bchromosome CDS2586408 483 + 0.519669
sms SDY_4650 probable ATP-dependent proteasechromosome CDS4353598 1383 + 0.577007
sohB SDY_1342 putative proteasechromosome CDS1239881 1041 + 0.49952
sppA SDY_1507 protease IVchromosome CDS1378879 1857 - 0.519655
sspA SDY_3405 stringent starvation protein Achromosome CDS3160802 639 - 0.533646
stbA SDY_P075 plasmid stable inheritance proteinpSD1_197 CDS63742 960 - 0.396875
surA SDY_0078 survival proteinchromosome CDS72538 1287 - 0.539239
tig SDY_0296 trigger factorchromosome CDS289815 1299 - 0.511932
tpx SDY_1402 thiol peroxidasechromosome CDS1295558 507 - 0.514793
trxA SDY_3968 thioredoxin 1chromosome CDS3697062 384 - 0.5
trxB SDY_2373 thioredoxin reductasechromosome CDS2174616 966 + 0.528986
trxC SDY_2825 putative thioredoxin-like proteinchromosome CDS2614591 420 + 0.5
yabH SDY_0080 putative DNA-binding proteinchromosome CDS76486 816 + 0.525735
yabK SDY_0094 putative transport system permease proteinchromosome CDS93380 1611 - 0.58473
ybaU SDY_0291 putative protease maturation proteinchromosome CDS282452 1872 - 0.520833
ybbJ SDY_0411 hypothetical proteinchromosome CDS394660 459 + 0.586057
ybbK SDY_0410 putative proteasechromosome CDS393746 918 + 0.523965
ybbN SDY_0407 putative thioredoxin-like proteinchromosome CDS391204 891 + 0.5578
ybiY SDY_0763 putative pyruvate formate-lyase 2 activating enzymechromosome CDS709545 927 + 0.543689
ycaL SDY_2349 putative heat shock proteinchromosome CDS2142176 765 - 0.500654
ydcP SDY_1740 putative collagenasechromosome CDS1586198 1638 - 0.505495
ydhD SDY_1880 hypothetical proteinchromosome CDS1714043 348 - 0.522988
yeaA SDY_1489 hypothetical proteinchromosome CDS1365686 414 + 0.480676
yeaZ SDY_1711 hypothetical proteinchromosome CDS1563682 696 - 0.556035
yedF SDY_1085 hypothetical proteinchromosome CDS1013682 234 - 0.474359
yeeD SDY_2230 hypothetical proteinchromosome CDS2033229 228 + 0.513158
yegD SDY_2193 putative heat shock proteinchromosome CDS1992465 1416 - 0.562147
yegQ SDY_2259 hypothetical proteinchromosome CDS2054955 1362 + 0.541116
yfcF SDY_2498 hypothetical proteinchromosome CDS2299912 324 - 0.487654
yfcG SDY_2499 putative S-transferasechromosome CDS2300371 648 + 0.520062
yfhE SDY_2723 hypothetical proteinchromosome CDS2522559 516 - 0.517442
ygcF SDY_2981 hypothetical proteinchromosome CDS2755549 672 - 0.513393
yggG SDY_3140 hypothetical proteinchromosome CDS2908513 759 - 0.525692
yggX SDY_3110 hypothetical proteinchromosome CDS2885303 276 - 0.467391
ygjD SDY_3248 putative O-sialoglycoprotein endopeptidasechromosome CDS3009833 1014 - 0.573964
yhbU SDY_3337 putative collagenasechromosome CDS3092197 996 + 0.572289
yhbV SDY_3338 hypothetical proteinchromosome CDS3093183 897 + 0.556299
yhfA SDY_3518 hypothetical proteinchromosome CDS3252456 405 - 0.51358
yhgI SDY_3662 hypothetical proteinchromosome CDS3393204 576 - 0.529514
yhhP SDY_3621 hypothetical proteinchromosome CDS3357439 246 - 0.51626
yibF SDY_4211 putative S-transferasechromosome CDS3941729 609 + 0.518883
yjjW SDY_4639 putative activating enzymechromosome CDS4342612 864 - 0.559028
yliJ SDY_0838 putative transferasechromosome CDS782376 633 - 0.518167
ynhC SDY_1912 hypothetical proteinchromosome CDS1741492 1272 - 0.529874
ynhD SDY_1913 putative ATP-binding component of a transport systemchromosome CDS1742738 747 - 0.507363
ynhE SDY_1914 hypothetical proteinchromosome CDS1743494 768 - 0.505208
yqjG SDY_3291 putative transferasechromosome CDS3053888 987 + 0.509625
yrfI SDY_3677 hypothetical proteinchromosome CDS3409509 885 - 0.523164
 
Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S1799 hypothetical proteinchromosome CDS1736185 1110 - 0.54955
NA S1728 hypothetical proteinchromosome CDS1668186 492 - 0.546748
NA S1990 putative serine proteasechromosome CDS1917742 828 + 0.519324
NA S3126 putative serine proteasechromosome CDS3007927 909 + 0.488449
NA S3237 hypothetical proteinchromosome CDS3122659 915 + 0.536612
NA S4255 hypothetical proteinchromosome CDS4170556 513 + 0.465887
NA S1664 chromosome pseudo1616799 822 - 0.489051
NA S1021 putative ATP-dependent proteasechromosome CDS1007571 1761 - 0.517888
NA S0741 head-tail preconnector gp5chromosome CDS726004 1506 + 0.588977
aat S0885 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS872913 705 - 0.539007
ahpC S0529 alkyl hydroperoxide reductase, C22 subunitchromosome CDS540684 564 + 0.498227
ahpF S0530 alkyl hydroperoxide reductase, F52a subunitchromosome CDS541462 1596 + 0.524436
bcp S2673 bacterioferritin comigratory proteinchromosome CDS2566669 471 + 0.492569
btuE S1638 Vitamin B12 transport periplasmic protein BtuEchromosome CDS1591274 552 + 0.492754
cbpA S1073 curved DNA-binding proteinchromosome CDS1055388 921 - 0.527687
ccmA S2415 ATP-binding protein of heme exporter Achromosome CDS2298479 624 - 0.55609
ccmB S2414 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS2297820 663 - 0.556561
ccmC S2413 heme exporter protein Cchromosome CDS2297041 738 - 0.555556
ccmE S2411 cytochrome-c biosynthesis heme-carrier protein ccmEchromosome CDS2296359 480 - 0.54375
ccmF S2410 cytochrome c-type biogenesis proteinchromosome CDS2294419 1944 - 0.569959
ccmH S2408 possible subunit of heme lyasechromosome CDS2292816 1053 - 0.545109
clpA S0882 ATP-binding component of serine proteasechromosome CDS869390 2277 + 0.525692
clpB S2831 heat shock proteinchromosome CDS2726170 2574 + 0.513209
clpP S0388 ATP-dependent Clp protease proteolytic subunitchromosome CDS391578 624 + 0.509615
clpX S0389 ATP-dependent protease ATP-binding subunitchromosome CDS392327 1275 + 0.517647
cydC S0886 ATP-binding component of cytochrome-related transportchromosome CDS873659 1722 - 0.534843
cydD S0887 ATP-binding component of cytochrome-related transportchromosome CDS875381 1767 - 0.532541
cyoE S0374 protoheme IX farnesyltransferasechromosome CDS379600 888 - 0.533784
cysU S2625 sulfate, thiosulfate transport system permease T proteinchromosome CDS2517116 834 - 0.549161
degS S3490 proteasechromosome CDS3360135 1068 + 0.525281
djlA S0054 Dna-J like membrane chaperone proteinchromosome CDS56168 816 + 0.529412
dnaJ S0015 chaperone with DnaK; heat shock proteinchromosome CDS14167 1131 + 0.55084
dnaK S0014 molecular chaperone DnaKchromosome CDS12162 1917 + 0.511737
dsbA S3816 protein disulfide isomerase Ichromosome CDS3716488 627 - 0.480064
dsbB S1262 disulfide bond formation protein Bchromosome CDS1219092 531 - 0.52354
dsbC S3078 protein disulfide isomerase IIchromosome CDS2964116 711 - 0.483826
dsbD S4557 thiol:disulfide interchange protein precursorchromosome CDS4459158 1698 - 0.540047
dsbE S2409 disulfide oxidoreductasechromosome CDS2293865 558 - 0.543011
dsbG S0528 thiol:disulfide interchange proteinchromosome CDS539566 807 - 0.459727
fdhE S3781 formate dehydrogenase accessory protein FdhEchromosome CDS3676581 930 + 0.553763
fkpA S4397 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4326007 813 + 0.477245
flgA S1156 flagellar basal body P-ring biosynthesis proteinchromosome CDS1120857 660 - 0.521212
flgJ S1165 flagellar biosynthesis proteinchromosome CDS1127985 942 + 0.539278
flgN S1154 flagella synthesis protein FlgNchromosome CDS1120067 417 - 0.479616
fliS S2064 flagellar protein FliSchromosome CDS1978105 411 + 0.481752
ftsH S3436 Zn metallo-peptidase, integral membrane cell division proteinchromosome CDS3308301 1935 - 0.534367
glnD S0160 PII uridylyl-transferasechromosome CDS176409 2673 - 0.534231
glnE S3299 adenylylating enzyme for glutamine synthetasechromosome CDS3174589 2841 - 0.552974
groEL S4564 chaperonin GroELchromosome CDS4466838 1647 + 0.530662
groES S4563 co-chaperonin GroESchromosome CDS4466501 294 + 0.493197
grpE S2851 heat shock protein GrpEchromosome CDS2743288 594 - 0.501683
grxA S0845 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS832069 258 - 0.449612
grxB S1148 glutaredoxin 2chromosome CDS1114060 648 - 0.487654
grxC S4119 glutaredoxin 3chromosome CDS4018179 252 + 0.511905
gst S1792 glutathionine S-transferasechromosome CDS1730733 606 + 0.504951
hflC S4598 protease specific for phage lambda cII repressorchromosome CDS4500278 1005 + 0.526368
hflK S4597 protease specific for phage lambda cII repressorchromosome CDS4499016 1260 + 0.561905
hscA S2745 chaperone protein HscAchromosome CDS2635707 1851 - 0.575905
hscB S2746 co-chaperone HscBchromosome CDS2637574 516 - 0.51938
hslO S4343 Hsp33-like chaperoninchromosome CDS4272846 870 - 0.524138
hslU S3738 ATP-dependent protease ATP-binding subunitchromosome CDS3636393 1332 + 0.523273
hslV S3737 ATP-dependent protease peptidase subunitchromosome CDS3635853 531 + 0.525424
htpG S0425 heat shock protein 90chromosome CDS431446 1875 + 0.5264
htpX S1512 heat shock protein HtpXchromosome CDS1473874 879 + 0.533561
htrA S0156 periplasmic serine protease Do, heat shock protein HtrAchromosome CDS172030 1425 + 0.539649
hyaE S1044 Hydrogenase-1 operon protein hyaEchromosome CDS1028237 399 + 0.568922
hybG S3238 hydrogenase-2 componentchromosome CDS3123696 249 - 0.534137
hypB S2936 guanine-nucleotide binding proteinchromosome CDS2813961 873 + 0.553265
hypC S2937 hydrogenase isoenzyme HypCchromosome CDS2814824 273 + 0.553114
hypD S2938 hydrogenase isoenzyme HypDchromosome CDS2815096 1122 + 0.553476
hypE S2939 hypE productchromosome CDS2816256 969 + 0.575851
hypF S2926 transcriptional regulatory proteinchromosome CDS2803481 2253 - 0.575677
ibpA S3994 heat shock proteinchromosome CDS3888823 414 - 0.47343
ibpB S3993 heat shock proteinchromosome CDS3888283 429 - 0.48951
lon S0390 DNA-binding, ATP-dependent protease La; heat shock K-proteinchromosome CDS393789 2355 + 0.523567
msrA S4532 methionine sulfoxide reductase Achromosome CDS4438015 639 + 0.541471
nrdG S4515 anaerobic ribonucleotide reductase activating proteinchromosome CDS4418948 465 + 0.505376
nrdH S2887 glutaredoxin-like proteinchromosome CDS2769253 246 + 0.528455
nrfE S3601 formate-dependent nitrite reductasechromosome CDS3474287 1659 + 0.571429
nrfF S3602 component of formate-dependent nitrite reductase complexchromosome CDS3475938 384 + 0.515625
nrfG S3603 component of formate-dependent nitrite reductase complexchromosome CDS3476318 597 + 0.522613
osmC S1876 osmotically inducible proteinchromosome CDS1818048 432 - 0.502315
pcm S2959 protein-L-isoaspartate O-methyltransferasechromosome CDS2835734 627 - 0.53429
pflA S0961 pyruvate formate lyase activating enzyme 1chromosome CDS936727 741 - 0.495277
pflC S3717 probable pyruvate formate lyase activating enzyme 2chromosome CDS3611015 879 - 0.54835
ppiA S4381 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS4311188 582 + 0.510309
ppiB S0464 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS472268 495 - 0.476768
ppiC S3909 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS3804137 282 + 0.510638
ptr S3029 protease IIIchromosome CDS2911012 2889 - 0.511596
slpA S0027 probable FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS24742 450 + 0.548889
slyD S4395 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4324929 591 + 0.548223
smpB S2857 SsrA-binding proteinchromosome CDS2748069 483 + 0.515528
sms S4692 probable ATP-dependent proteasechromosome CDS4583669 1383 + 0.576283
sohB S1359 putative proteasechromosome CDS1323483 1050 + 0.505714
sppA S1572 protease IV, a signal peptide peptidasechromosome CDS1530434 1857 - 0.519655
sspA S3484 stringent starvation protein Achromosome CDS3354737 639 - 0.536776
surA S0052 survival proteinchromosome CDS52220 1287 - 0.538462
tig S0387 trigger factorchromosome CDS390033 1299 + 0.511932
tpx S1413 thiol peroxidasechromosome CDS1383065 507 - 0.514793
trxA S3905 thioredoxinchromosome CDS3798639 384 - 0.5
trxB S0888 thioredoxin reductasechromosome CDS877270 966 - 0.534162
trxC S2817 putative thioredoxin-like proteinchromosome CDS2709220 420 + 0.495238
ybaU S0392 putative protease maturation proteinchromosome CDS396816 1872 + 0.521902
ybbJ S0440 hypothetical proteinchromosome CDS450522 456 - 0.576754
ybbK S0441 putative proteasechromosome CDS450977 918 - 0.523965
ybbN S0444 putative thioredoxin-like proteinchromosome CDS453546 891 - 0.555556
ybeS S0657 putative enzymechromosome CDS667910 1428 - 0.485294
ybfN S0622 hypothetical proteinchromosome CDS637848 327 - 0.492355
ybiY S0817 putative pyruvate formate-lyase 2 activating enzymechromosome CDS802830 927 - 0.542611
ycaL S0969 putative heat shock proteinchromosome CDS948024 765 + 0.495425
ydhD S1814 hypothetical proteinchromosome CDS1753036 348 - 0.525862
yeaA S1560 methionine sulfoxide reductase Bchromosome CDS1518695 414 + 0.478261
yeaZ S1536 hypothetical proteinchromosome CDS1495951 696 + 0.558908
yedF S2069 hypothetical proteinchromosome CDS1982281 234 + 0.482906
yeeD S2194 hypothetical proteinchromosome CDS2072710 228 - 0.513158
yegQ S2271 hypothetical proteinchromosome CDS2155312 1362 + 0.540382
yfcF S2512 hypothetical proteinchromosome CDS2407410 645 - 0.51938
yfcG S2513 putative S-transferasechromosome CDS2408190 648 + 0.509259
ygcF S2984 hypothetical proteinchromosome CDS2858336 672 - 0.513393
yggG S3128 hypothetical proteinchromosome CDS3011024 885 + 0.520904
yggX S3162 hypothetical proteinchromosome CDS3038368 276 + 0.474638
ygjD S3310 putative O-sialoglycoprotein endopeptidasechromosome CDS3187231 1014 - 0.57002
yhbU S3416 putative collagenasechromosome CDS3284808 996 + 0.572289
yhbV S3417 hypothetical proteinchromosome CDS3285812 879 + 0.558589
yhfA S4388 hypothetical proteinchromosome CDS4317676 405 + 0.518519
yhgI S4328 hypothetical proteinchromosome CDS4255182 576 - 0.53125
yhhP S4275 hypothetical proteinchromosome CDS4194485 246 + 0.54065
yibF S4138 putative S-transferasechromosome CDS4038965 609 + 0.528736
yiiF S3782 hypothetical proteinchromosome CDS3677840 243 - 0.45679
yjjW S4682 putative activating enzymechromosome CDS4573489 864 - 0.545139
yliJ S0831 putative transferasechromosome CDS820168 633 - 0.519747
ynhC S1843 hypothetical proteinchromosome CDS1780392 1272 - 0.529874
ynhD S1844 putative ATP-binding component of a transport systemchromosome CDS1781638 747 - 0.502008
ynhE S1845 hypothetical proteinchromosome CDS1782394 1488 - 0.518145
yqjG S3353 putative transferasechromosome CDS3234009 987 + 0.515704
 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF2924 putative serine proteasechromosome CDS3015838 909 + 0.488449
NA SF3007 hypothetical proteinchromosome CDS3103149 468 - 0.399573
NA SF3036 hypothetical proteinchromosome CDS3133996 915 + 0.535519
NA SF1544 antitermination protein, homolog of cryptic prophagechromosome CDS1578402 822 - 0.489051
NA SF1904 putative serine proteasechromosome CDS1941077 828 + 0.518116
NA SF0955 putative ATP-dependent proteasechromosome CDS1003607 1761 - 0.51732
NA SF4279 similar to FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4458423 672 - 0.549107
NA SF1667 hypothetical proteinchromosome CDS1696595 1110 - 0.547748
NA SF0703 head-tail preconnector gp5chromosome CDS729846 1506 + 0.588977
NA SF1600 hypothetical proteinchromosome CDS1628557 492 - 0.546748
NA SF3510 hypothetical proteinchromosome CDS3602935 513 - 0.467836
NA SF3274 putative periplasmic serine protease Do, heat shock protein HtrAchromosome CDS3368574 1200 + 0.5125
aat SF0844 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS878100 705 - 0.539007
ahpC SF0524 alkyl hydroperoxide reductase, C22 subunitchromosome CDS544792 564 + 0.498227
ahpF SF0525 alkyl hydroperoxide reductase, F52a subunitchromosome CDS545570 1596 + 0.524436
bcp SF2523 bacterioferritin comigratory proteinchromosome CDS2588536 471 + 0.492569
btuE SF1521 Vitamin B12 transport periplasmic protein BtuEchromosome CDS1552898 552 + 0.492754
cbpA SF1004 curved DNA-binding proteinchromosome CDS1051156 921 - 0.527687
ccmA SF2285 ATP-binding protein of heme exporter Achromosome CDS2319022 624 - 0.55609
ccmB SF2284 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS2318363 663 - 0.556561
ccmC SF2283 heme exporter protein Cchromosome CDS2317584 738 - 0.555556
ccmE SF2281 cytochrome-c biosynthesis heme-carrier protein ccmEchromosome CDS2316902 480 - 0.54375
ccmF SF2280 cytochrome c-type biogenesis proteinchromosome CDS2314962 1944 - 0.569959
ccmH SF2278 possible subunit of heme lyasechromosome CDS2313359 1053 - 0.545109
clpA SF0842 ATP-binding component of serine proteasechromosome CDS874577 2277 + 0.526131
clpB SF2655 heat shock proteinchromosome CDS2731536 2574 + 0.513597
clpP SF0382 ATP-dependent Clp protease proteolytic subunitchromosome CDS391777 624 + 0.509615
clpX SF0383 ATP-dependent protease ATP-binding subunitchromosome CDS392526 1275 + 0.517647
cydC SF0845 ATP-binding component of cytochrome-related transportchromosome CDS878846 1722 - 0.534262
cydD SF0846 ATP-binding component of cytochrome-related transportchromosome CDS880568 1767 - 0.532541
cyoE SF0369 protoheme IX farnesyltransferasechromosome CDS380467 888 - 0.533784
cysU SF2478 sulfate, thiosulfate transport system permease T proteinchromosome CDS2538983 834 - 0.549161
degS SF3275 proteasechromosome CDS3370053 1068 + 0.525281
djlA SF0052 Dna-J like membrane chaperone proteinchromosome CDS56682 816 + 0.529412
dnaJ SF0015 chaperone with DnaK; heat shock proteinchromosome CDS14167 1131 + 0.55084
dnaK SF0014 molecular chaperone DnaKchromosome CDS12162 1917 + 0.511737
dsbA SF3931 protein disulfide isomerase Ichromosome CDS4056106 627 + 0.480064
dsbB SF1174 disulfide bond formation protein Bchromosome CDS1216191 531 - 0.52354
dsbC SF2879 protein disulfide isomerase IIchromosome CDS2972027 711 - 0.483826
dsbD SF4290 thiol:disulfide interchange protein precursorchromosome CDS4466965 1698 - 0.540047
dsbE SF2279 disulfide oxidoreductasechromosome CDS2314408 558 - 0.543011
dsbG SF0523 thiol:disulfide interchange proteinchromosome CDS543674 807 - 0.459727
fdhE SF3967 formate dehydrogenase accessory protein FdhEchromosome CDS4095709 930 - 0.553763
fkpA SF3365 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3445885 813 - 0.477245
flgA SF1078 flagellar basal body P-ring biosynthesis proteinchromosome CDS1117965 660 - 0.521212
flgJ SF1085 flagellar biosynthesis proteinchromosome CDS1125093 942 + 0.539278
flgN SF1076 flagella synthesis protein FlgNchromosome CDS1117175 417 - 0.479616
fliS SF1968 flagellar protein FliSchromosome CDS2001449 411 + 0.481752
ftsH SF3218 Zn metallo-peptidase, integral membrane cell division proteinchromosome CDS3317184 1935 - 0.534884
glnD SF0157 PII uridylyl-transferasechromosome CDS176922 2673 - 0.534231
glnE SF3094 adenylylating enzyme for glutamine synthetasechromosome CDS3185926 2841 - 0.552974
groEL SF4297 chaperonin GroELchromosome CDS4474645 1647 + 0.530662
groES SF4296 co-chaperonin GroESchromosome CDS4474308 294 + 0.493197
grpE SF2673 heat shock protein GrpEchromosome CDS2748655 594 - 0.501683
grxA SF0802 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS835913 258 - 0.449612
grxB SF1070 glutaredoxin 2chromosome CDS1111168 648 - 0.487654
grxC SF3649 glutaredoxin 3chromosome CDS3756787 252 - 0.511905
gst SF1660 glutathionine S-transferasechromosome CDS1691095 606 + 0.5033
hflC SF4330 protease specific for phage lambda cII repressorchromosome CDS4508119 1005 + 0.526368
hflK SF4329 protease specific for phage lambda cII repressorchromosome CDS4506857 1260 + 0.561905
hscA SF2573 chaperone protein HscAchromosome CDS2642120 1851 - 0.575905
hscB SF2574 co-chaperone HscBchromosome CDS2643987 516 - 0.51938
hslO SF3419 Hsp33-like chaperoninchromosome CDS3498989 870 + 0.524138
hslU SF4009 ATP-dependent protease ATP-binding subunitchromosome CDS4135494 1332 - 0.523273
hslV SF4010 ATP-dependent protease peptidase subunitchromosome CDS4136835 531 - 0.525424
htpG SF0418 heat shock protein 90chromosome CDS431645 1875 + 0.5264
htpX SF1396 heat shock protein HtpXchromosome CDS1436948 879 + 0.533561
htrA SF0153 periplasmic serine protease Do, heat shock protein HtrAchromosome CDS172543 1425 + 0.539649
hyaE SF0977 Hydrogenase-1 operon protein hyaEchromosome CDS1024276 399 + 0.568922
hybG SF3037 hydrogenase-2 componentchromosome CDS3135033 249 - 0.534137
hypB SF2744 guanine-nucleotide binding proteinchromosome CDS2819350 873 + 0.553265
hypC SF2745 hydrogenase isoenzyme HypCchromosome CDS2820213 273 + 0.553114
hypD SF2746 hydrogenase isoenzyme HypDchromosome CDS2820485 1122 + 0.553476
hypE SF2747 hypE productchromosome CDS2821645 969 + 0.575851
hypF SF2735 transcriptional regulatory proteinchromosome CDS2808846 2253 - 0.575677
ibpA SF3776 heat shock proteinchromosome CDS3885357 414 + 0.47343
ibpB SF3777 heat shock proteinchromosome CDS3885882 429 + 0.48951
lon SF0384 DNA-binding, ATP-dependent protease La; heat shock K-proteinchromosome CDS393988 2355 + 0.523567
msrA SF4268 methionine sulfoxide reductase Achromosome CDS4445822 639 + 0.541471
mxiG CP0136 MxiG, component of the Mxi-Spa secretion machinery, contains one transmembrane segmentpCP301 CDS118817 1116 + 0.310932
nrdG SF4253 anaerobic ribonucleotide reductase activating proteinchromosome CDS4426754 465 + 0.505376
nrdH SF2701 glutaredoxin-like proteinchromosome CDS2774617 246 + 0.528455
nrfE SF4134 formate-dependent nitrite reductasechromosome CDS4302102 1659 + 0.571429
nrfF SF4135 component of formate-dependent nitrite reductase complexchromosome CDS4303753 384 + 0.515625
nrfG SF4136 component of formate-dependent nitrite reductase complexchromosome CDS4304133 597 + 0.522613
osmC SF1743 osmotically inducible proteinchromosome CDS1780325 432 - 0.502315
pcm SF2766 protein-L-isoaspartate O-methyltransferasechromosome CDS2841030 627 - 0.535885
pflA SF0897 pyruvate formate lyase activating enzyme 1chromosome CDS932758 741 - 0.495277
pflC SF4029 probable pyruvate formate lyase activating enzyme 2chromosome CDS4161325 879 + 0.54835
ppiA SF3382 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS3460935 582 - 0.510309
ppiB SF0456 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS472466 495 - 0.476768
ppiC SF3850 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS3968876 282 - 0.510638
ptr SF2832 protease IIIchromosome CDS2916321 2889 - 0.511596
slpA SF0025 probable FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS25256 450 + 0.548889
slpA SF0024 probable FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS24749 450 - 0.548889
slyD SF3367 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3447185 591 - 0.548223
smpB SF2679 SsrA-binding proteinchromosome CDS2753436 483 + 0.515528
sms SF4421 probable ATP-dependent proteasechromosome CDS4591518 1383 + 0.576283
sohB SF1274 putative proteasechromosome CDS1323616 1050 + 0.505714
sppA SF1457 protease IV, a signal peptide peptidasechromosome CDS1492060 1857 - 0.519655
sspA SF3269 stringent starvation protein Achromosome CDS3364655 639 - 0.536776
stbA CP0195 plasmid stable inheritance proteinpCP301 CDS161854 960 - 0.398958
surA SF0050 survival proteinchromosome CDS52734 1287 - 0.538462
tig SF0381 trigger factorchromosome CDS390232 1299 + 0.511932
tpx SF1330 thiol peroxidasechromosome CDS1383186 507 - 0.514793
trxA SF3854 thioredoxinchromosome CDS3974272 384 + 0.5
trxB SF0847 thioredoxin reductasechromosome CDS882457 966 - 0.534162
trxC SF2644 putative thioredoxin-like proteinchromosome CDS2715776 420 + 0.495238
ybaU SF0386 putative protease maturation proteinchromosome CDS397015 1872 + 0.521902
ybbJ SF0433 hypothetical proteinchromosome CDS450721 456 - 0.576754
ybbK SF0434 putative proteasechromosome CDS451176 918 - 0.523965
ybbN SF0437 putative thioredoxin-like proteinchromosome CDS453745 891 - 0.555556
ybeS SF0635 putative enzymechromosome CDS671678 1428 - 0.485294
ybfN SF0611 hypothetical proteinchromosome CDS641730 327 - 0.489297
ybiY SF0774 putative pyruvate formate-lyase 2 activating enzymechromosome CDS806672 927 - 0.542611
ycaL SF0905 putative heat shock proteinchromosome CDS944055 765 + 0.495425
ydhD SF1682 hypothetical proteinchromosome CDS1713446 348 - 0.525862
yeaA SF1445 methionine sulfoxide reductase Bchromosome CDS1480321 414 + 0.478261
yeaZ SF1421 hypothetical proteinchromosome CDS1459020 696 + 0.558908
yedF SF1973 hypothetical proteinchromosome CDS2005625 234 + 0.482906
yeeD SF2071 hypothetical proteinchromosome CDS2089796 228 - 0.513158
yegQ SF2146 hypothetical proteinchromosome CDS2172450 1362 + 0.540382
yfcF SF2377 hypothetical proteinchromosome CDS2427954 645 - 0.51938
yfcG SF2378 putative S-transferasechromosome CDS2428734 648 + 0.509259
ygcF SF2790 hypothetical proteinchromosome CDS2863632 672 - 0.513393
yggG SF2926 hypothetical proteinchromosome CDS3018935 885 + 0.520904
yggX SF2959 hypothetical proteinchromosome CDS3046192 276 + 0.474638
ygjD SF3105 putative O-sialoglycoprotein endopeptidasechromosome CDS3198568 1014 - 0.57002
yhbU SF3199 putative collagenasechromosome CDS3293692 996 + 0.571285
yhbV SF3200 hypothetical proteinchromosome CDS3294696 879 + 0.558589
yhfA SF3375 hypothetical proteinchromosome CDS3454624 405 - 0.518519
yhgI SF3437 hypothetical proteinchromosome CDS3516919 576 + 0.53125
yhhP SF3488 hypothetical proteinchromosome CDS3579273 246 - 0.54065
yibF SF3630 putative S-transferasechromosome CDS3735644 609 - 0.528736
yiiF SF3966 hypothetical proteinchromosome CDS4095137 243 + 0.45679
yjjW SF4411 putative activating enzymechromosome CDS4581339 864 - 0.545139
yliJ SF0788 putative transferasechromosome CDS824010 633 - 0.519747
ynhC SF1711 hypothetical proteinchromosome CDS1743435 1272 - 0.529874
ynhD SF1712 putative ATP-binding component of a transport systemchromosome CDS1744681 747 - 0.502008
ynhE SF1713 hypothetical proteinchromosome CDS1745437 1488 - 0.517473
yqjG SF3145 putative transferasechromosome CDS3242892 987 + 0.515704
 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_0277 putative antitermination proteinchromosome CDS295367 624 + 0.504808
NA SFV_0963 putative ATP-dependent proteasechromosome CDS1011760 1761 - 0.516752
NA SFV_2719 head-tail preconnector gp5chromosome CDS2785586 1506 + 0.589641
NA SFV_2986 putative serine proteasechromosome CDS3054313 909 + 0.488449
NA SFV_3494 hypothetical proteinchromosome CDS3563346 513 - 0.465887
NA SFV_3042 hypothetical proteinchromosome CDS3107752 867 + 0.537486
aat SFV_0876 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS912193 705 - 0.539007
ahpC SFV_0559 alkyl hydroperoxide reductase, C22 subunit, thioredoxin-likechromosome CDS588156 564 + 0.498227
ahpF SFV_0560 Alkyl hydroperoxide reductase subunit Fchromosome CDS588964 1566 + 0.527458
bcp SFV_2525 bacterioferritin comigratory proteinchromosome CDS2584350 471 + 0.492569
btuE SFV_1513 vitamin B12 transportchromosome CDS1553482 552 + 0.494565
cbpA SFV_1012 curved DNA-binding proteinchromosome CDS1059740 921 - 0.527687
ccmA SFV_2277 ATP binding protein of heme exporter Achromosome CDS2312719 624 - 0.55609
ccmB SFV_2276 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS2312060 663 - 0.556561
ccmC SFV_2275 heme exporter protein Cchromosome CDS2311281 762 - 0.551181
ccmE SFV_2273 Cytochrome c-type biogenesis protein ccmEchromosome CDS2310599 480 - 0.54375
ccmF SFV_2272 cytochrome c-type biogenesis proteinchromosome CDS2308659 1944 - 0.571502
ccmH SFV_2270 possible subunit of heme lyasechromosome CDS2307056 1053 - 0.545109
clpA SFV_0873 ATP-binding component of serine proteasechromosome CDS908670 2277 + 0.527009
clpB SFV_2660 heat shock proteinchromosome CDS2729209 2574 + 0.513209
clpP SFV_0411 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS429428 624 + 0.509615
clpX SFV_0412 ATP-dependent protease ATP-binding subunit proteasechromosome CDS430177 1275 + 0.517647
cydC SFV_0877 ATP-binding component of cytochrome-related transportchromosome CDS912939 1722 - 0.535424
cydD SFV_0878 ATP-binding component of cytochrome-related transportchromosome CDS914661 1767 - 0.531975
cysU SFV_2477 sulfate, thiosulfate transport system permease T proteinchromosome CDS2532685 834 - 0.547962
degS SFV_3262 proteasechromosome CDS3332730 1068 + 0.525281
dnaJ SFV_0013 chaperone with DnaKchromosome CDS14233 1131 + 0.551724
dnaK SFV_0012 chaperone Hsp70chromosome CDS12228 1917 + 0.511737
dsbA SFV_3641 Thiol:disulfide interchange protein dsbA precursorchromosome CDS3726936 627 - 0.478469
dsbB SFV_1192 disulfide bond formation protein Bchromosome CDS1232873 531 - 0.52354
dsbC SFV_2941 protein disulfide isomerase IIchromosome CDS3010631 711 - 0.483826
dsbD SFV_4292 thiol:disulfide interchange proteinchromosome CDS4435550 1698 - 0.540636
dsbE SFV_2271 Thiol:disulfide interchange protein dsbEchromosome CDS2308105 558 - 0.543011
dsbG SFV_0558 thiol:disulfide interchange proteinchromosome CDS587038 807 - 0.459727
fdhE SFV_3604 affects formate dehydrogenase-Nchromosome CDS3684736 930 + 0.553763
fklB SFV_4280 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4427008 621 - 0.557166
fkpA SFV_3352 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3407768 813 - 0.477245
flgN SFV_1092 flagellar biosynthetic proteinchromosome CDS1135244 417 - 0.479616
fliS SFV_1969 flagellar protein FliSchromosome CDS2010121 411 + 0.484185
glnD SFV_0150 protein PIIchromosome CDS176581 2673 - 0.534231
glnE SFV_3093 adenylylating enzyme for glutamine synthetasechromosome CDS3157777 2928 - 0.549522
grpE SFV_2857 GrpE proteinchromosome CDS2920001 594 + 0.50505
grxA SFV_0834 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS871906 258 - 0.449612
grxB SFV_1086 glutaredoxin 2chromosome CDS1129237 648 - 0.487654
grxC SFV_3921 glutaredoxin 3chromosome CDS4022986 252 + 0.515873
gst SFV_1652 glutathionine S-transferasechromosome CDS1690583 606 + 0.504951
hflB SFV_3208 ATP-dependent zinc-metallo proteasechromosome CDS3280841 1935 - 0.534367
hflC SFV_4333 protease specific for phage lambda cII repressorchromosome CDS4475972 1005 + 0.526368
hflK SFV_4332 protease specific for phage lambda cII repressorchromosome CDS4474710 1260 + 0.561905
hscA SFV_2574 chaperone protein HscAchromosome CDS2637797 1851 - 0.575905
hslJ SFV_1804 heat shock protein hslJchromosome CDS1848866 345 - 0.472464
hslU SFV_4002 ATP-dependent protease ATP-binding subunitchromosome CDS4106771 1332 - 0.523273
hslV SFV_4003 ATP-dependent protease peptidase subunitchromosome CDS4108112 531 - 0.52354
htpX SFV_1400 heat shock protein, integral membrane proteinchromosome CDS1447485 882 + 0.531746
htrA SFV_0146 periplasmic serine protease Dochromosome CDS172214 1425 + 0.538947
hyaE SFV_0985 processing of HyaA and HyaB proteinschromosome CDS1032914 399 + 0.568922
hybG SFV_3043 Hydrogenase-2 operon protein hybGchromosome CDS3108741 249 - 0.534137
hypB SFV_2776 Hydrogenase isoenzyme nickel incorporation protein hypBchromosome CDS2843627 873 - 0.553265
hypC SFV_2775 HypCchromosome CDS2843364 273 - 0.553114
hypD SFV_2774 HypDchromosome CDS2842243 1122 - 0.554367
hypE SFV_2773 HypEchromosome CDS2841236 969 - 0.575851
hypF SFV_2793 transcriptional regulatory proteinchromosome CDS2859600 2253 + 0.575677
ibpA SFV_3824 heat shock proteinchromosome CDS3919464 414 + 0.47343
ibpB SFV_3825 heat shock proteinchromosome CDS3919989 429 + 0.487179
lon SFV_0413 DNA-binding, ATP-dependent protease Lachromosome CDS431639 2355 + 0.523567
mopA SFV_4299 GroELchromosome CDS4443230 1647 + 0.530662
mopB SFV_4298 co-chaperonin GroESchromosome CDS4442893 294 + 0.493197
msrA SFV_4269 peptide methionine sulfoxide reductasechromosome CDS4414406 639 + 0.543036
nrdG SFV_4254 anaerobic ribonucleotide reductase activating proteinchromosome CDS4395336 465 + 0.505376
nrfE SFV_4137 Cytochrome c-type biogenesis protein nrfEchromosome CDS4268458 1605 - 0.568224
nrfF SFV_4136 part of formate-dependent nitrite reductase complexchromosome CDS4268082 384 - 0.515625
nrfG SFV_4135 part of formate-dependent nitrite reductase complexchromosome CDS4267489 597 - 0.522613
osmC SFV_1739 osmotically inducible proteinchromosome CDS1779633 432 - 0.502315
pcm SFV_2755 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS2822362 627 + 0.53429
pflA SFV_0902 pyruvate formate lyase activating enzyme 1chromosome CDS939695 741 - 0.495277
pflC SFV_4021 probable pyruvate formate lyase activating enzyme 2chromosome CDS4132509 879 + 0.54835
ppiA SFV_3369 peptidyl-prolyl cis-trans isomerase Achromosome CDS3422857 582 - 0.510309
ppiB SFV_0483 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS510022 495 - 0.476768
ppiC SFV_3727 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3813726 282 + 0.510638
ptr SFV_2899 protease IIIchromosome CDS2963323 2889 - 0.511596
slpA SFV_0022 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS24809 450 + 0.548889
slyD SFV_3354 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3409068 591 - 0.549915
smpB SFV_2852 small protein Bchromosome CDS2915331 483 - 0.515528
sms SFV_4423 probable ATP-dependent proteasechromosome CDS4558599 1383 + 0.576283
sppA SFV_1451 protease IV, a signal peptide peptidasechromosome CDS1495126 1857 - 0.519655
sspA SFV_3256 stringent starvation protein Achromosome CDS3327312 639 - 0.536776
surA SFV_0047 survival proteinchromosome CDS52402 1287 - 0.539239
tig SFV_0410 trigger factorchromosome CDS427883 1299 + 0.511932
tpx SFV_1340 thiol peroxidasechromosome CDS1397130 507 - 0.512821
trxA SFV_3723 thioredoxin 1chromosome CDS3808228 435 - 0.485057
trxB SFV_0879 thioredoxin reductasechromosome CDS916550 966 - 0.535197
trxC SFV_2645 putative thioredoxin-like proteinchromosome CDS2712256 420 + 0.492857
yabH SFV_0049 putative DNA binding proteinchromosome CDS56350 816 + 0.529412
ybbJ SFV_0461 hypothetical proteinchromosome CDS488369 447 - 0.581656
ybbK SFV_0462 putative proteasechromosome CDS488824 918 - 0.523965
ybbN SFV_0465 putative thioredoxin-like proteinchromosome CDS491393 891 - 0.555556
ybeS SFV_0680 putative enzyme of polynucleotide modificationchromosome CDS716164 1428 - 0.485994
ybeW SFV_0676 putative dnaK proteinchromosome CDS711613 1671 + 0.502693
ybiY SFV_0807 putative pyruvate formate-lyase 2 activating enzymechromosome CDS842652 900 - 0.546667
ycaL SFV_0910 putative heat shock proteinchromosome CDS950968 789 + 0.489227
ydhD SFV_1676 hypothetical proteinchromosome CDS1712890 348 - 0.525862
yeaA SFV_1437 hypothetical proteinchromosome CDS1482624 414 + 0.478261
yeaZ SFV_1422 hypothetical proteinchromosome CDS1469559 696 + 0.558908
yedF SFV_1974 hypothetical proteinchromosome CDS2014297 234 + 0.482906
yeeD SFV_2071 hypothetical proteinchromosome CDS2091706 228 - 0.513158
yfcF SFV_2368 hypothetical proteinchromosome CDS2420513 645 - 0.51938
yfcG SFV_2369 putative S-transferasechromosome CDS2421293 648 + 0.510802
yfhE SFV_2575 hypothetical proteinchromosome CDS2639664 516 - 0.51938
ygcF SFV_2678 hypothetical proteinchromosome CDS2754863 672 + 0.514881
yggG SFV_2988 hypothetical proteinchromosome CDS3057317 978 + 0.52045
yggX SFV_3020 hypothetical proteinchromosome CDS3083983 276 + 0.474638
ygjD SFV_3104 putative O-sialoglycoprotein endopeptidasechromosome CDS3170420 1014 - 0.57002
yhbU SFV_3188 putative collagenasechromosome CDS3257349 996 + 0.572289
yhbV SFV_3189 hypothetical proteinchromosome CDS3258353 846 + 0.554374
yhfA SFV_3362 hypothetical proteinchromosome CDS3416546 405 - 0.518519
yhgI SFV_3422 hypothetical proteinchromosome CDS3478833 576 + 0.53125
yhhP SFV_3473 hypothetical proteinchromosome CDS3539684 246 - 0.54065
yibF SFV_3941 putative S-transferasechromosome CDS4043410 609 + 0.528736
yifB SFV_3735 putative 2-component regulatorchromosome CDS3823471 1521 + 0.506246
yiiF SFV_3605 hypothetical proteinchromosome CDS3685995 243 - 0.45679
yjjW SFV_4413 putative activating enzymechromosome CDS4548420 864 - 0.545139
yliJ SFV_0821 putative transferasechromosome CDS860005 579 - 0.533679
ynhD SFV_1705 putative ATP-binding component of a transport systemchromosome CDS1741660 747 - 0.502008
ynhE SFV_1706 hypothetical proteinchromosome CDS1742416 1488 - 0.517473
yqjG SFV_3146 putative transferasechromosome CDS3217822 987 + 0.515704
yrfI SFV_3406 hypothetical proteinchromosome CDS3460903 870 + 0.524138
 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSON_1583 putative methylasechromosome CDS1663456 1833 + 0.430987
NA SSON_1679 putative transferasechromosome CDS1783919 618 - 0.470874
NA SSON_1901 antitermination protein Q-like proteinchromosome CDS1997634 822 - 0.491484
NA SSON_0877 putative protease/scaffold proteinchromosome CDS931489 1146 + 0.5
NA SSON_2147 hypothetical proteinchromosome CDS2251792 1005 + 0.555224
NA SSON_1516 hypothetical proteinchromosome CDS1592312 1110 + 0.55045
NA SSON_0242 putative ATP-dependent Clp proteinase ATP-binding chainchromosome CDS265070 2460 - 0.595528
NA SSON_0959 putative ATP-dependent proteasechromosome CDS1034632 1761 - 0.518455
NA SSON_1260 antitermination protein Qchromosome CDS1337335 855 - 0.488889
NA SSON_3134 hypothetical proteinchromosome CDS3295114 915 + 0.533333
NA SSON_0243 hypothetical proteinchromosome CDS267548 300 - 0.573333
NA SSON_2427 putative minor capsid protein precursorchromosome CDS2562275 1281 - 0.605777
aat SSON_0886 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS940547 705 - 0.534752
ahpC SSON_0557 alkyl hydroperoxide reductase, C22 subunitchromosome CDS598022 564 + 0.498227
ahpF SSON_0558 alkyl hydroperoxide reductase, F52a subunitchromosome CDS598726 1596 + 0.526316
bcp SSON_2561 bacterioferritin comigratory proteinchromosome CDS2702531 471 + 0.494692
btuE SSON_1448 vitamin B12 transportchromosome CDS1522547 552 + 0.494565
cbpA SSON_1008 curved DNA-binding proteinchromosome CDS1082249 921 - 0.529859
ccmA SSON_2259 ATP binding protein of heme exporter Achromosome CDS2371621 618 - 0.558252
ccmB SSON_2258 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS2370962 663 - 0.558069
ccmC SSON_2257 heme exporter protein Cchromosome CDS2370183 738 - 0.552846
ccmE SSON_2255 cytochrome c biogenesis, possible subunit of a heme lyasechromosome CDS2369501 480 - 0.535417
ccmF SSON_2254 cytochrome c-type biogenesis proteinchromosome CDS2367561 1944 - 0.570988
ccmH SSON_2252 possible subunit of heme lyasechromosome CDS2365958 1053 - 0.541311
clpA SSON_0883 ATP-binding component of serine proteasechromosome CDS937021 2277 + 0.527888
clpB SSON_2718 heat shock proteinchromosome CDS2877856 2574 - 0.513597
clpP SSON_0420 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS445474 624 + 0.511218
clpX SSON_0421 ATP-dependent specificity component of clpP serine protease, chaperonechromosome CDS446223 1275 + 0.518431
cydC SSON_0887 ATP-binding component of cytochrome-related transportchromosome CDS941293 1722 - 0.538328
cydD SSON_0888 ATP-binding component of cytochrome-related transport, Zn sensitivechromosome CDS943015 1767 - 0.532541
cyoE SSON_0411 protoheme IX farnesyltransferasechromosome CDS435610 891 - 0.537598
cysU SSON_2513 sulfate, thiosulfate transport system permease T proteinchromosome CDS2650750 834 - 0.551559
degQ SSON_3375 serine endoproteasechromosome CDS3552436 1368 + 0.52193
degS SSON_3376 proteasechromosome CDS3553893 1068 + 0.529026
djlA SSON_0063 putative DNA binding proteinchromosome CDS66700 816 + 0.528186
dnaJ SSON_0015 chaperone with DnaKchromosome CDS14944 1131 + 0.549072
dnaK SSON_0014 chaperone Hsp70chromosome CDS12939 1917 + 0.511215
dsbA SSON_4032 protein disulfide isomerase Ichromosome CDS4260410 627 + 0.478469
dsbB SSON_1177 reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella.chromosome CDS1255775 531 - 0.525424
dsbC SSON_3046 protein disulfide isomerase IIchromosome CDS3207918 711 - 0.483826
dsbD SSON_4319 thiol:disulfide interchange proteinchromosome CDS4589079 1698 - 0.537691
dsbE SSON_2253 disulfide oxidoreductasechromosome CDS2367007 558 - 0.548387
dsbG SSON_0556 thiol:disulfide interchange proteinchromosome CDS596892 759 - 0.472991
fdhE SSON_4060 FdhEchromosome CDS4293789 930 - 0.554839
fkpA SSON_3477 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3638606 813 - 0.483395
flgA SSON_1092 flagellar protein for assembly of basal-body periplasmic P ringchromosome CDS1171509 660 - 0.527273
flgJ SSON_1101 flagellar biosynthesis proteinchromosome CDS1178663 942 + 0.544586
flgN SSON_1090 protein of flagellar biosynthesischromosome CDS1170719 417 - 0.479616
fliJ SSON_2000 flagellar fliJ proteinchromosome CDS2098892 444 + 0.527027
fliS SSON_1981 flagellar repressor of class 3a and 3b operonschromosome CDS2081511 411 + 0.493917
glnD SSON_0179 protein PIIchromosome CDS200899 2673 - 0.533857
glnE SSON_3190 adenylylating enzyme for glutamine synthetasechromosome CDS3351049 2841 - 0.560014
grpE SSON_2770 heat shock proteinchromosome CDS2922453 594 - 0.501683
grxA SSON_0834 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS887296 258 - 0.449612
grxB SSON_1084 glutaredoxin 2chromosome CDS1164712 648 - 0.490741
grxC SSON_3795 glutaredoxin 3chromosome CDS3981021 252 + 0.511905
hflB SSON_3326 degrades sigma32, integral membrane peptidase, cell division proteinchromosome CDS3504074 1935 - 0.534367
hflC SSON_4360 protease specific for phage lambda cII repressorchromosome CDS4630149 1005 + 0.530348
hflK SSON_4359 protease specific for phage lambda cII repressorchromosome CDS4628887 1260 + 0.561905
hscA SSON_2608 heat shock proteinchromosome CDS2760302 1851 - 0.577526
hslJ SSON_1745 heat shock protein hslJchromosome CDS1850106 423 + 0.470449
hslU SSON_4100 heat shock protein hslVU ATPase subunitchromosome CDS4334456 1332 - 0.525526
hslV SSON_4101 heat shock protein hslVU, proteasome-related peptidase subunitchromosome CDS4335797 531 - 0.527307
htpG SSON_0460 chaperone Hsp90chromosome CDS487308 1875 + 0.5296
htpX SSON_1332 heat shock proteinchromosome CDS1407072 882 + 0.531746
htrA SSON_0174 periplasmic serine protease Dochromosome CDS195804 1425 + 0.541754
hyaE SSON_0982 protein involved in processing of HyaA and HyaB proteinschromosome CDS1055997 339 + 0.554572
hybG SSON_3135 hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2chromosome CDS3296151 249 - 0.526104
hypB SSON_2874 guanine-nucleotide binding proteinchromosome CDS3013868 873 + 0.555556
hypC SSON_2875 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS3014731 273 + 0.549451
hypD SSON_2876 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS3015003 1122 + 0.551693
hypE SSON_2877 HypEchromosome CDS3016163 969 + 0.571723
hypF SSON_2856 transcriptional regulatory proteinchromosome CDS2996411 2253 - 0.579228
ibpA SSON_3638 heat shock proteinchromosome CDS3808253 414 - 0.47343
ibpB SSON_3637 heat shock proteinchromosome CDS3807713 435 - 0.482759
lon SSON_0422 DNA-binding, ATP-dependent protease Lachromosome CDS447685 2355 + 0.524841
mopA SSON_4326 GroELchromosome CDS4596759 1647 + 0.53309
mopB SSON_4325 GroESchromosome CDS4596422 294 + 0.486395
msrA SSON_4404 peptide methionine sulfoxide reductasechromosome CDS4668546 639 - 0.543036
mxiG SSO_P098 MxiGpSS_046 CDS92038 1116 + 0.30914
nrdG SSON_4418 anaerobic ribonucleotide reductase activating proteinchromosome CDS4686353 465 - 0.505376
nrdH SSON_2818 glutaredoxin-like proteinchromosome CDS2961839 246 + 0.53252
nrfE SSON_4255 formate-dependent nitrite reductasechromosome CDS4517507 1659 + 0.569017
nrfF SSON_4256 NrfFchromosome CDS4519158 384 + 0.518229
nrfG SSON_4257 component of formate-dependent nitrite reductase complexchromosome CDS4519538 597 + 0.520938
osmC SSON_1642 osmotically inducible proteinchromosome CDS1733921 432 - 0.497685
pcm SSON_2891 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS3032537 627 - 0.535885
pflA SSON_0903 pyruvate formate lyase activating enzyme 1chromosome CDS964609 741 - 0.502024
pflC SSON_4125 probable pyruvate formate lyase activating enzyme 2chromosome CDS4365898 879 + 0.547213
ppiA SSON_3494 peptidyl-prolyl cis-trans isomerase Achromosome CDS3653724 573 - 0.511344
ppiB SSON_0493 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS522848 495 + 0.476768
ppiC SSON_3946 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4168887 282 - 0.507092
ptr SSON_2978 protease IIIchromosome CDS3125611 2889 - 0.509519
rpsV SSON_1644 30S ribosomal subunit protein S22chromosome CDS1735790 138 + 0.449275
slpA SSON_0033 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS32992 450 + 0.54
slyD SSON_3479 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3639906 591 - 0.549915
smpB SSON_2743 small protein Bchromosome CDS2901987 483 - 0.513458
sms SSON_4539 probable ATP-dependent proteasechromosome CDS4809579 1383 + 0.574837
sohB SSON_1871 putative proteasechromosome CDS1969931 1050 - 0.506667
sppA SSON_1389 protease IV, a signal peptide peptidasechromosome CDS1462846 1857 - 0.521271
sspA SSON_3370 regulator of transcription; stringent starvation protein Achromosome CDS3548475 639 - 0.536776
surA SSON_0061 survival proteinchromosome CDS62752 1287 - 0.540793
tig SSON_0419 trigger factorchromosome CDS443930 1299 + 0.511932
tpx SSON_1814 thiol peroxidasechromosome CDS1910282 507 + 0.512821
trxA SSON_3952 thioredoxin 1chromosome CDS4176397 384 + 0.5
trxB SSON_0889 thioredoxin reductasechromosome CDS944904 966 - 0.533126
trxC SSON_2708 putative thioredoxin-like proteinchromosome CDS2865068 420 + 0.495238
ybaU SSON_0424 putative protease maturation proteinchromosome CDS450712 1872 + 0.522436
ybbJ SSON_0477 hypothetical proteinchromosome CDS507651 456 - 0.574561
ybbK SSON_0478 putative proteasechromosome CDS508106 918 - 0.526144
ybbN SSON_0481 putative thioredoxin-like proteinchromosome CDS510675 891 - 0.548822
ybeS SSON_0600 putative enzyme of polynucleotide modificationchromosome CDS638698 1428 + 0.485294
ybeW SSON_0604 putative dnaK proteinchromosome CDS643006 1671 - 0.499102
ybiY SSON_0806 putative pyruvate formate-lyase 2 activating enzymechromosome CDS857762 927 - 0.537217
ycaL SSON_0911 putative heat shock proteinchromosome CDS975948 789 + 0.491762
ydcP SSON_1703 putative collagenasechromosome CDS1806277 2004 - 0.507485
ydhD SSON_1502 hypothetical proteinchromosome CDS1577860 348 + 0.522988
yeaA SSON_1385 hypothetical proteinchromosome CDS1460123 414 + 0.480676
yeaZ SSON_1354 hypothetical proteinchromosome CDS1428843 696 + 0.554598
yedF SSON_1986 hypothetical proteinchromosome CDS2085687 234 + 0.478632
yeeD SSON_2082 hypothetical proteinchromosome CDS2176848 228 - 0.513158
yegD SSON_2122 putative heat shock proteinchromosome CDS2220167 1305 + 0.565517
yegQ SSON_2134 hypothetical proteinchromosome CDS2238476 1362 + 0.538913
yfcF SSON_2358 hypothetical proteinchromosome CDS2490832 645 - 0.51938
yfcG SSON_2359 putative S-transferasechromosome CDS2491612 648 + 0.510802
yfhE SSON_2609 hypothetical proteinchromosome CDS2762169 516 - 0.51938
ygcF SSON_2930 hypothetical proteinchromosome CDS3070990 672 - 0.516369
yggG SSON_3090 hypothetical proteinchromosome CDS3253561 885 + 0.523164
yggX SSON_3234 hypothetical proteinchromosome CDS3410754 276 - 0.474638
ygjD SSON_3201 putative O-sialoglycoprotein endopeptidasechromosome CDS3363762 1014 - 0.572978
yhbU SSON_3304 putative collagenasechromosome CDS3478298 996 + 0.574297
yhbV SSON_3305 hypothetical proteinchromosome CDS3479284 897 + 0.561873
yhfA SSON_3487 hypothetical proteinchromosome CDS3647413 405 - 0.51358
yhgI SSON_3546 hypothetical proteinchromosome CDS3709076 576 + 0.53125
yhhP SSON_3708 hypothetical proteinchromosome CDS3886020 246 - 0.528455
yibF SSON_3816 putative S-transferasechromosome CDS4009279 609 + 0.530378
yiiF SSON_4059 hypothetical proteinchromosome CDS4293217 243 + 0.452675
yjjW SSON_4530 putative activating enzymechromosome CDS4799367 864 - 0.553241
yliJ SSON_0821 putative transferasechromosome CDS875392 579 - 0.533679
ynhC SSON_1475 hypothetical proteinchromosome CDS1550181 1272 + 0.528302
ynhD SSON_1474 putative ATP-binding component of a transport systemchromosome CDS1549460 747 + 0.504685
ynhE SSON_1473 hypothetical proteinchromosome CDS1547924 1527 + 0.51539
yqjG SSON_3261 putative transferasechromosome CDS3435731 1014 + 0.512821
yrfI SSON_3532 hypothetical proteinchromosome CDS3692414 885 + 0.526554
 
Sodalis glossinidius str. morsitans, morsitans
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SG0260 glutamate-ammonia-ligase adenylyltransferasechromosome CDS476313 2814 + 0.62118
NA SG1742 hypothetical proteinchromosome CDS2971878 225 - 0.528889
NA SG0987 pyruvate formate-lyase 1 activating enzymechromosome CDS1623918 741 - 0.531714
NA SG1992 thiol:disulfide interchange proteinchromosome CDS3448755 717 - 0.564854
NA SG0673 ATP-dependent protease Lonchromosome CDS1138878 2355 + 0.557113
NA SG2036 hypothetical proteinchromosome CDS3502950 273 + 0.443223
NA SG0675 peptidyl-prolyl cis-trans isomerase Dchromosome CDS1141954 1854 + 0.568501
NA SG2186 glutaredoxin 3chromosome CDS3802394 252 - 0.531746
NA SGP2_0018 hypothetical proteinpSG2 CDS22521 291 + 0.47079
NA SG0008 heat shock protein Achromosome CDS18087 414 + 0.502415
NA SG0292 putative sulfate/molybdate ABC transporter permease componentchromosome CDS526848 762 + 0.614173
NA SG0672 ATP-dependent Clp protease ATP-binding subunitchromosome CDS1137409 1275 + 0.56
NA SG2168 heat shock proteinchromosome CDS3779164 549 + 0.526412
NA SG1909 thioredoxin 2chromosome CDS3295089 372 + 0.575269
NA SG1027 putative ATP-dependent proteasechromosome CDS1695513 1752 - 0.586758
NA SG0514 hypothetical proteinchromosome CDS898003 672 + 0.58631
NA SG0923 glutaredoxin 1chromosome CDS1512553 267 - 0.483146
NA SG1904 hypothetical proteinchromosome CDS3282315 240 + 0.55
NA SG0771 suppressor for copper-sensitivity Dchromosome CDS1288077 504 + 0.593254
NA SG2325 hypothetical proteinchromosome CDS3993205 576 + 0.538194
NA SG1804 small protein Bchromosome CDS3071116 483 + 0.513458
NA SG0254 putative O-sialoglycoprotein endopeptidasechromosome CDS469998 1020 + 0.633333
NA SG2291 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3941629 843 - 0.587189
NA SG2387 thioredoxin 1chromosome CDS4092998 327 - 0.474006
NA SG1636 heme exporter protein Cchromosome CDS2795456 642 - 0.543614
NA SG0212 serine proteasechromosome CDS389816 1065 - 0.570892
NA SG0029 flagellar basal body P-ring formation protein FlgAchromosome CDS49511 717 - 0.601116
NA SG0340 hypothetical proteinchromosome CDS626788 1017 + 0.566372
NA SG0416 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS735912 474 + 0.561181
NA SG0410 chaperone protein DnaJchromosome CDS728332 1125 + 0.584889
NA SG0049 flagellar protein FliJchromosome CDS66023 450 - 0.522222
NA SG1945 protein-PII uridylyltransferasechromosome CDS3349558 2691 + 0.605723
NA SG1821 hypothetical proteinchromosome CDS3090133 399 - 0.463659
NA SG1445 hypothetical proteinchromosome CDS2419528 1125 + 0.614222
NA SG0642 putative peroxidasechromosome CDS1103717 603 - 0.53068
NA SG1406 putative proteasechromosome CDS2331422 1047 + 0.578797
NA SG1106 thioredoxin reductasechromosome CDS1831070 969 - 0.593395
NA SG0529 protein-L-isoaspartate O-methyltransferasechromosome CDS913713 627 + 0.607656
NA SG0704 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1185508 495 - 0.521212
NA SG0698 hypothetical proteinchromosome CDS1176755 918 - 0.584967
NA SG0671 ATP-dependent Clp protease proteolytic subunitchromosome CDS1136637 624 + 0.520833
NA SG1348 hypothetical proteinchromosome CDS2241822 414 + 0.560386
NA SG0339 hypothetical proteinchromosome CDS625540 1245 + 0.6
NA SG1974 protease III precursorchromosome CDS3405321 2922 - 0.586242
NA SG1848 putative pyrrolidone-carboxylate peptidasechromosome CDS3139638 579 - 0.599309
NA SG0305 chaperonin GroESchromosome CDS551473 294 + 0.517007
NA SG2423 hypothetical proteinchromosome CDS4161375 519 + 0.529865
NA SG1798 heat shock protein GrpEchromosome CDS3066409 588 - 0.556122
NA SG0697 hypothetical proteinchromosome CDS1176381 378 - 0.65873
NA SG0038 flagellar protein FlgJchromosome CDS56843 918 + 0.636166
NA SG1104 cytochrome-related ABC transporter ATP-binding componentchromosome CDS1827279 1731 - 0.649913
NA SG1105 cytochrome-related ABC transporter ATP-binding componentchromosome CDS1829087 1689 - 0.616341
NA SG0399 putative ATP-dependent proteasechromosome CDS704139 1383 + 0.60376
NA SG2169 heat shock proteinchromosome CDS3779705 1332 + 0.556306
NA SG1340 disulfide bond formation proteinchromosome CDS2223353 531 - 0.564972
NA SG0056 flagellar protein FliSchromosome CDS72218 390 - 0.533333
NA SG1634 thiol:disulfide interchange protein DsbEchromosome CDS2793078 456 - 0.576754
NA SG2303 peptidyl-prolyl cis-trans isomerase Achromosome CDS3957161 573 - 0.556719
NA SG0826 hypothetical proteinchromosome CDS1384975 225 - 0.555556
NA SG2293 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3943056 519 - 0.547206
NA SG1350 protease IVchromosome CDS2243432 1851 - 0.555916
NA SG0384 putative collagenasechromosome CDS686252 810 - 0.587654
NA SG0218 stringent starvation protein Achromosome CDS395587 642 + 0.570093
NA SG1708 sulfate ABC transporter permease component CysTchromosome CDS2918573 834 - 0.610312
NA SG0409 chaperone protein DnaKchromosome CDS726305 1911 + 0.559916
NA SG2236 thiol:disulfide interchange proteinchromosome CDS3892988 624 - 0.516026
NA SG1433 putative ABC transporter ATP-binding componentchromosome CDS2398853 747 + 0.538153
NA SG1440 hypothetical proteinchromosome CDS2415144 348 + 0.531609
NA SG0306 chaperonin GroELchromosome CDS551812 1647 + 0.554341
NA SG1637 heme exporter protein Achromosome CDS2796575 636 - 0.573899
NA SG0505 global stress requirement protein GsrAchromosome CDS874446 1437 + 0.549061
NA SG2300 hypothetical proteinchromosome CDS3950177 408 - 0.588235
NA SG0670 trigger factorchromosome CDS1134941 1305 + 0.554023
NA SG0584 heat shock proteinchromosome CDS984244 2595 + 0.549904
NA SG1432 hypothetical proteinchromosome CDS2397303 1488 + 0.56586
NA SG1317 heat shock proteinchromosome CDS2193793 882 + 0.572562
NA SG2316 heat shock proteinchromosome CDS3978588 879 + 0.579067
NA SG0213 serine proteasechromosome CDS390966 1371 - 0.572575
NA SG0426 survival protein SurA precursorchromosome CDS747954 1296 - 0.589506
NA SG0663 cytochrome o ubiquinol oxidase C subunit (protoheme IX farnesyltransferase)chromosome CDS1126745 891 - 0.530864
NA SG1102 ATP-dependent Clp protease ATP-binding componentchromosome CDS1823506 2274 + 0.5708
NA SG1434 hypothetical proteinchromosome CDS2399574 1287 + 0.589744
NA SG1498 thiol peroxidasechromosome CDS2513023 507 + 0.56213
NA SG1332 hypothetical proteinchromosome CDS2214475 702 + 0.643875
NA SG0371 cell division proteinchromosome CDS666481 1932 + 0.590062
NA SG0769 suppressor for copper-sensitivity Bchromosome CDS1285352 2004 + 0.605788
NA SG0079 hypothetical proteinchromosome CDS127863 255 + 0.611765
NA SG0349 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS637228 621 + 0.597423
NA SG0770 suppressor for copper-sensitivity Cchromosome CDS1287352 726 + 0.550964
NA SG1728 bacterioferritin comigratory proteinchromosome CDS2942216 468 + 0.525641
NA SG0301 thiol-disulfide interchange proteinchromosome CDS546822 1773 - 0.600113
NA SGP1_0051 small heat shock proteinpSG1 CDS79259 492 - 0.485772
NA SG1633 putative cytochrome c-type biogenesis proteinchromosome CDS2792519 465 - 0.589247
NA SG0428 DnaJ-like proteinchromosome CDS751840 825 + 0.58303
NA SG1609 putative glutathione S-transferasechromosome CDS2763213 765 + 0.584314
NA SG0692 heat shock protein HtpGchromosome CDS1166416 1893 + 0.541997
 
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA WGpWb0004 hypothetical proteinpWb1 CDS2735 942 - 0.267516
NA WGpWb0006 putative heat shock proteinpWb1 CDS4632 402 - 0.231343
ahpC WGLp487 hypothetical proteinchromosome CDS563664 600 + 0.291667
clpP WGLp155 hypothetical proteinchromosome CDS184236 585 - 0.299145
clpX WGLp154 ATP-dependent protease ATP-binding subunitchromosome CDS182895 1248 - 0.259615
cyoE WGLp151 hypothetical proteinchromosome CDS177561 867 + 0.212226
degQ WGLp143 hypothetical proteinchromosome CDS167776 1374 + 0.286754
dnaJ WGLp298 hypothetical proteinchromosome CDS350225 1125 - 0.325333
dnaK WGLp299 hypothetical proteinchromosome CDS351424 1938 - 0.294118
dsbA WGLp257 hypothetical proteinchromosome CDS300479 630 - 0.190476
flgA WGLp037 hypothetical proteinchromosome CDS44781 678 - 0.215339
fliJ WGLp056 hypothetical proteinchromosome CDS60381 453 - 0.163355
fliS WGLp062 hypothetical proteinchromosome CDS66160 393 - 0.188295
groES WGLp259 co-chaperonin GroESchromosome CDS302907 294 - 0.35034
grpE WGLp109 hypothetical proteinchromosome CDS119533 672 - 0.21131
grxC WGLp540 hypothetical proteinchromosome CDS624649 234 - 0.183761
hflB WGLp231 hypothetical proteinchromosome CDS272201 1917 - 0.317162
hflC WGLp186 hypothetical proteinchromosome CDS220765 990 + 0.278788
hflK WGLp185 hypothetical proteinchromosome CDS219509 1221 + 0.259623
hslU WGLp277 ATP-dependent protease ATP-binding subunitchromosome CDS327225 1356 - 0.314159
hslV WGLp278 ATP-dependent protease peptidase subunitchromosome CDS328558 543 - 0.338858
htpG WGLp527 heat shock protein 90chromosome CDS609735 1917 + 0.215962
htpX WGLp105 heat shock protein HtpXchromosome CDS113657 885 + 0.255367
lon WGLp153 hypothetical proteinchromosome CDS180382 2331 - 0.303303
mopA WGLp258 hypothetical proteinchromosome CDS301221 1641 - 0.3766
ppiD WGLp152 hypothetical proteinchromosome CDS178436 1887 - 0.167462
smpB WGLp112 SsrA-binding proteinchromosome CDS121720 483 + 0.21118
sppA WGLp107 hypothetical proteinchromosome CDS116454 1848 + 0.252165
surA WGLp018 hypothetical proteinchromosome CDS22260 1359 + 0.140545
tig WGLp156 hypothetical proteinchromosome CDS184934 1308 - 0.13685
trxA WGLp304 hypothetical proteinchromosome CDS359362 339 - 0.188791
trxB WGLp492 hypothetical proteinchromosome CDS568538 945 + 0.277249
ydhD WGLp334 hypothetical proteinchromosome CDS393772 321 + 0.258567
yeaZ WGLp372 hypothetical proteinchromosome CDS431491 693 + 0.174603
yggX WGLp076 hypothetical proteinchromosome CDS81230 237 - 0.177215
ygjD WGLp471 hypothetical proteinchromosome CDS546461 1023 + 0.270772
yhgI WGLp301 hypothetical proteinchromosome CDS355634 624 - 0.166667
ynhC WGLp358 hypothetical proteinchromosome CDS416058 1296 - 0.179784
ynhD WGLp359 hypothetical proteinchromosome CDS417319 741 - 0.245614
ynhE WGLp360 hypothetical proteinchromosome CDS418111 1521 - 0.268245
 
Yersinia enterocolitica subsp. enterocolitica 8081, 8081
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YE3058 hypothetical proteinchromosome CDS3323815 915 + 0.471038
NA YE2491 putative thioredoxinchromosome CDS2682720 450 - 0.513333
NA YE3444 hypothetical proteinchromosome CDS3756626 273 + 0.391941
NA YE1389 putative serine proteasechromosome CDS1548219 5412 + 0.495196
NA YE3417 putative lipoproteinchromosome CDS3732460 753 + 0.498008
NA YE2628 hypothetical proteinchromosome CDS2845485 1377 + 0.365287
NA YE3356 putative DNA-binding proteinchromosome CDS3667426 954 - 0.495807
NA YE0314 hypothetical proteinchromosome CDS372183 222 + 0.504505
NA YE2377 hypothetical proteinchromosome CDS2564392 699 - 0.537911
NA YE1115 putative heat shock proteinchromosome CDS1250466 1353 - 0.542498
NA YE3772 hypothetical proteinchromosome CDS4112875 735 + 0.506122
NA YE0768 hypothetical proteinchromosome CDS892316 324 + 0.444444
NA YE0379 hypothetical proteinchromosome CDS448234 1008 + 0.498016
NA YE0158 hypothetical proteinchromosome CDS186571 1368 - 0.493421
NA YE0753 hypothetical proteinchromosome CDS878616 672 + 0.501488
NA YE1463 putative glutathione S-transferase-family proteinchromosome CDS1643551 621 - 0.468599
NA YE3719 hypothetical proteinchromosome CDS4061010 999 + 0.492492
NA YE0147 putative magnesium chelatase family proteinchromosome CDS172798 1524 - 0.500656
NA YE0450 putative proteasechromosome CDS525662 996 - 0.5251
NA YE3993 hypothetical proteinchromosome CDS4344796 576 - 0.475694
NA YE3954 hypothetical proteinchromosome CDS4294692 408 - 0.480392
NA YE1302 putative metal resistance proteinchromosome CDS1448083 501 + 0.50499
NA YE3841 Putative glutathione S transferasechromosome CDS4188489 672 - 0.488095
NA YE0789 putative thiol:disulfide interchange proteinchromosome CDS912248 627 + 0.444976
NA YE1000 heat shock protein GrpEchromosome CDS1121313 579 + 0.466321
NA YE2264 hypothetical proteinchromosome CDS2472916 414 - 0.478261
NA YE4091 putative osmotic/stress related proteinchromosome CDS4475427 426 - 0.495305
NA YE3337 hypothetical proteinchromosome CDS3649748 645 + 0.463566
NA YE1579 putative Lon proteasechromosome CDS1779485 1773 - 0.499154
NA YE0217 hypothetical proteinchromosome CDS254823 255 + 0.513726
NA YE2155 hypothetical proteinchromosome CDS2355069 345 - 0.484058
NA YE0132 putative peroxiredoxin/glutaredoxin family proteinchromosome CDS151070 732 - 0.47541
NA YE1848 putative transferasechromosome CDS2029506 636 + 0.471698
NA YE1301 putative metal resistance proteinchromosome CDS1447361 726 + 0.504132
NA YE1132 hypothetical proteinchromosome CDS1270769 1449 - 0.505176
aat YE1520 putative leucyl/phenylalanyl-tRNA-protein transferasechromosome CDS1698481 711 - 0.483826
act YE1531 pyruvate formate-lyase 1 activating enzymechromosome CDS1716116 648 - 0.472222
ahpC YE3174 putative alkyl hydroperoxide reductase subunit cchromosome CDS3444333 603 + 0.485904
b0028 YE0618 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS710960 438 + 0.490868
b0053 YE0632 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)chromosome CDS724456 1305 - 0.479693
b0055 YE0634 DnaJ-like proteinchromosome CDS728454 753 + 0.50332
b2620 YE0994 SsrA-binding protein (small protein B)chromosome CDS1116598 483 - 0.440994
b4389 YE0579 DNA repair protein RadAchromosome CDS663442 1386 + 0.548341
bcp YE1135 bacterioferritin comigratory proteinchromosome CDS1275468 471 - 0.454352
btuE YE2194 putative vitamin B12 transport proteinchromosome CDS2404331 555 - 0.448649
capR YE3132 ATP-dependent protease Lachromosome CDS3405712 2355 - 0.4862
ccmB YE1264 heme exporter protein Bchromosome CDS1407271 660 + 0.512121
ccmC YE1265 putative heme exporter protein Cchromosome CDS1408101 738 + 0.523035
ccmE YE1267 putative cytochrome c-type biogenesis proteinchromosome CDS1409080 495 + 0.50505
ccmF YE1268 putative cytochrome c-type biogenesis proteinchromosome CDS1409571 1968 + 0.519817
ccmG YE1269 thiol:disulfide interchange protein DsbEchromosome CDS1411538 567 + 0.5097
ccmH YE1270 putative cytochrome c-type biogenesis proteinchromosome CDS1412197 411 + 0.506083
clpA YE1518 ATP-dependent Clp protease ATP-binding subunitchromosome CDS1695576 2277 + 0.490997
clpB YE0893 Clp ATPasechromosome CDS1016096 2574 + 0.486791
clpB5 YE2696 Clp ATPasechromosome CDS2929324 2673 - 0.48223
clpP YE3134 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS3409738 624 - 0.463141
clpX YE3133 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS3408261 1272 - 0.476415
corE YE0841 hypothetical proteinchromosome CDS968548 792 - 0.481061
crpA YE0354 60 kDa chaperoninchromosome CDS420434 1653 + 0.503327
crpB YE0353 10 kDa chaperoninchromosome CDS420084 294 + 0.47619
cycZ YE0348 thiol:disulfide interchange proteinchromosome CDS413785 1737 - 0.526195
degP YE0741 global stress requirement protein GsrAchromosome CDS861811 1437 + 0.493389
degQ YE3744 proteasechromosome CDS4089861 1374 + 0.489083
degS YE3745 proteasechromosome CDS4091323 1089 + 0.470156
dnaJ YE0610 chaperone protein DnaJchromosome CDS702206 1131 + 0.498674
dnaK YE0609 chaperone protein DnaKchromosome CDS700187 1908 + 0.475891
dsbA YE0020 secreted thiol:disulfide interchange protein DsbAchromosome CDS25856 624 + 0.426282
dsbB YE2285 disulfide bond formation protein Bchromosome CDS2499170 531 + 0.468927
dsbC YE3379 thiol:disulfide interchange protein (DsbC)chromosome CDS3690993 717 - 0.454672
fdhE YE4132 putative formate dehydrogenase formation proteinchromosome CDS4523328 930 - 0.493548
fipA YE0167 thioredoxin 1chromosome CDS200312 327 + 0.46789
fklB YE0398 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS463604 621 + 0.510467
fkpA YE3935 peptidyl-prolyl cis-trans isomerasechromosome CDS4277568 816 - 0.468137
gcp YE3681 putative glycoproteasechromosome CDS4015553 1014 - 0.513807
glnD YE3286 [protein-PII] uridylyltransferasechromosome CDS3588094 2679 + 0.503919
glnE YE3674 glutamate-ammonia-ligase adenylyltransferasechromosome CDS4006430 2853 - 0.511041
grxA YE1479 glutaredoxin 1chromosome CDS1663249 264 - 0.42803
grxC YE0079 glutaredoxinchromosome CDS89256 249 + 0.506024
gst YE2137 glutathione S-transferasechromosome CDS2338006 609 + 0.469622
hreP YE2568 subtilisin/kexin-like proteasechromosome CDS2762376 1650 + 0.424848
hsc YE1061 chaperone protein HscAchromosome CDS1181573 1851 + 0.522961
hscB YE1060 chaperone protein HscBchromosome CDS1180716 525 + 0.485714
hslO YE3985 heat-shock chaperoninchromosome CDS4331780 837 + 0.487455
hslS YE4163 heat shock proteinchromosome CDS4561809 474 - 0.455696
hslT YE4164 heat shock proteinchromosome CDS4562407 414 - 0.408213
hslU YE0104 ATP-binding heat shock proteinchromosome CDS113424 1332 - 0.495495
hslV YE0105 heat shock proteinchromosome CDS114810 525 - 0.497143
htpG YE3090 heat shock protein HtpGchromosome CDS3360566 1875 - 0.479467
htpX YE1869 putative heat shock proteinchromosome CDS2051661 882 + 0.494331
hybG YE3602A hydrogenase-2 operon proteinchromosome CDS3926179 285 - 0.540351
hydA YE3600 hydrogenase maturation proteinchromosome CDS3921409 2277 - 0.571366
hypB YE3603 hydrogenase isoenzymes nickel incorporation proteinchromosome CDS3926454 1101 - 0.522253
hypC YE2796 putative hydrogenase isoenzymes formation proteinchromosome CDS3036629 279 - 0.530466
hypD YE3602 hydrogenase isoenzymes formation proteinchromosome CDS3925089 1104 - 0.555254
hypE YE3601 hydrogenase isoenzymes formation proteinchromosome CDS3923972 969 - 0.563468
msrA YE0404 peptide methionine sulfoxide reductasechromosome CDS470285 639 - 0.517997
nrdG YE0481 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS556986 375 - 0.498667
nrdH YE0929 putative glutaredoxinchromosome CDS1057764 237 - 0.468354
pcm YE0773 protein-L-isoaspartate O-methyltransferasechromosome CDS895716 627 + 0.491228
pcp YE2950 putative pyrrolidone-carboxylate peptidasechromosome CDS3209353 648 - 0.493827
pog YE3739 putative stringent starvation protein Achromosome CDS4085631 642 - 0.492212
ppiA YE3960 peptidyl-prolyl cis-trans isomerase Achromosome CDS4302067 570 - 0.477193
ppiB YE3049 peptidyl-prolyl cis-trans isomerase Bchromosome CDS3314996 495 + 0.462626
ppiC YE0162 peptidyl-prolyl cis-trans isomerase Cchromosome CDS192664 282 - 0.421986
ppiD YE3130 peptidyl-prolyl cis-trans isomerase Dchromosome CDS3403136 1887 - 0.480657
ptr YE3311 protease III precursorchromosome CDS3616460 2892 - 0.470263
scsB YE1300 putative metal resistance proteinchromosome CDS1445304 2061 + 0.536147
slyD YE3938 peptidyl-prolyl cis-trans isomerasechromosome CDS4279137 585 - 0.517949
sohB YE2203 peptidase family U7 proteinchromosome CDS2413957 1047 - 0.475645
sppA YE2260 protease IVchromosome CDS2468716 1851 + 0.481361
tig YE3135 Trigger factorchromosome CDS3410818 1305 - 0.468966
tpx YE2113 thiol peroxidasechromosome CDS2315091 504 + 0.474206
trxB YE1523 thioredoxin reductasechromosome CDS1703317 975 - 0.492308
trxC YE3245 thioredoxin 2chromosome CDS3539206 441 + 0.510204
ureD YE0957 urease accessory proteinchromosome CDS1080669 984 + 0.481707
ureE YE0954 urease accessory proteinchromosome CDS1078489 693 + 0.49062
ureF YE0955 urease accessory proteinchromosome CDS1079203 687 + 0.522562
ureG YE0956 urease accessory proteinchromosome CDS1080067 606 + 0.508251
ybbJ YE3059 hypothetical proteinchromosome CDS3324732 450 + 0.511111
ybbN YE3057 putative thioredoxinchromosome CDS3322748 870 + 0.512644
yghU YE2038 putative glutathione S-transferasechromosome CDS2229341 852 + 0.502347
yqjD YE3715 hypothetical proteinchromosome CDS4059122 306 + 0.503268
 
Yersinia pestis Antiqua, Antiqua
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPA_3654 hypothetical proteinchromosome CDS4097915 1176 - 0.460884
NA YPA_3737 proteasechromosome CDS4188375 1374 - 0.487627
NA YPA_2612 heat shock protein HtpGchromosome CDS2907566 1875 - 0.463467
NA YPA_1330 putative thioredoxinchromosome CDS1494513 531 + 0.468927
NA YPA_1455 hypothetical proteinchromosome CDS1637433 699 + 0.549356
NA YPA_2396 urease accessory proteinchromosome CDS2684058 687 + 0.490539
NA YPA_2260 hypothetical proteinchromosome CDS2531742 1485 + 0.504377
NA YPA_2651 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS2950751 1272 - 0.481132
NA YPA_3931 60 kDa chaperoninchromosome CDS4428293 1638 - 0.504274
NA YPA_1202 flagellar protein FliJchromosome CDS1352735 447 - 0.478747
NA YPA_3001 heat shock proteinchromosome CDS3339054 465 + 0.488172
NA YPA_3068 putative flagella basal body P-ring formation proteinchromosome CDS3409749 918 + 0.486928
NA YPA_0662 transport ATP-binding proteinchromosome CDS749909 1725 - 0.515942
NA YPA_2737 putative accessory processing proteinchromosome CDS3044542 1854 - 0.452535
NA YPA_3144 putative glycoproteasechromosome CDS3488714 1014 - 0.518738
NA YPA_3932 10 kDa chaperoninchromosome CDS4429977 294 - 0.489796
NA YPA_0491 protease III precursorchromosome CDS567193 2889 + 0.467636
NA YPA_3216 hypothetical proteinchromosome CDS3576109 381 + 0.464567
NA YPA_2398 hypothetical proteinchromosome CDS2685530 834 + 0.482014
NA YPA_0311 hypothetical proteinchromosome CDS366002 273 - 0.410256
NA YPA_MT0051 lipoproteinpMT CDS50403 831 - 0.515042
NA YPA_3758 hypothetical proteinchromosome CDS4215345 936 - 0.49359
NA YPA_2104 thiol:disulfide interchange protein DsbEchromosome CDS2359461 567 - 0.497355
NA YPA_3892 hypothetical proteinchromosome CDS4382519 723 - 0.304288
NA YPA_2650 ATP-dependent protease Lachromosome CDS2948202 2409 - 0.479867
NA YPA_3330 heat-shock chaperoninchromosome CDS3672583 882 + 0.492063
NA YPA_2981 putative proteasechromosome CDS3317259 996 + 0.5251
NA YPA_4063 chaperone protein DnaJchromosome CDS4577598 1140 + 0.499123
NA YPA_2872 hypothetical proteinchromosome CDS3195180 672 - 0.491071
NA YPA_2334 chaperone protein HscBchromosome CDS2620889 525 - 0.506667
NA YPA_2761 thioredoxin 2chromosome CDS3074068 438 + 0.502283
NA YPA_1215 FliTchromosome CDS1365301 363 - 0.413223
NA YPA_2652 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS2952228 624 - 0.461538
NA YPA_2957 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS3295710 435 + 0.51954
NA YPA_0618 glutaredoxin 1chromosome CDS705902 264 - 0.439394
NA YPA_0201 hypothetical proteinchromosome CDS239394 396 + 0.467172
NA YPA_2881 global stress requirement protein GsrAchromosome CDS3206801 1446 - 0.498617
NA YPA_2106 putative cytochrome c-type biogenesis proteinchromosome CDS2361991 495 - 0.511111
NA YPA_2379 hypothetical proteinchromosome CDS2668602 237 - 0.447257
NA YPA_0672 pyruvate formate-lyase 1 activating enzymechromosome CDS765337 735 - 0.466667
NA YPA_1748 hypothetical proteinchromosome CDS1961262 1512 - 0.494048
NA YPA_3526 secreted thiol:disulfide interchange protein DsbAchromosome CDS3937442 624 - 0.421474
NA YPA_0106 putative peroxiredoxin/glutaredoxin family proteinchromosome CDS126916 732 - 0.463115
NA YPA_3059 putative flagellar proteinchromosome CDS3403155 294 - 0.503401
NA YPA_0664 thioredoxin reductasechromosome CDS753861 963 - 0.515057
NA YPA_1815 putative heat shock proteinchromosome CDS2034589 882 - 0.470522
NA YPA_2103 putative cytochrome c-type biogenesis proteinchromosome CDS2358952 513 - 0.465887
NA YPA_0661 putative leucyl/phenylalanyl-tRNA-protein transferasechromosome CDS748905 786 - 0.492366
NA YPA_3887 M48 peptidase family proteinchromosome CDS4376171 1047 + 0.526266
NA YPA_3222 hypothetical proteinchromosome CDS3578413 180 + 0.527778
NA YPA_3277 peptidyl-prolyl cis-trans isomerasechromosome CDS3615093 801 - 0.458177
NA YPA_3279 peptidyl-prolyl cis-trans isomerasechromosome CDS3616647 588 - 0.52551
NA YPA_4088 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)chromosome CDS4602992 1305 - 0.485824
NA YPA_0463 prepilin peptidasechromosome CDS534410 843 + 0.358244
NA YPA_3909 hypothetical proteinchromosome CDS4400931 1260 - 0.503175
NA YPA_0290 Clp ATPasechromosome CDS338513 2649 + 0.585126
NA YPA_0082 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS100750 621 - 0.520129
NA YPA_3296 hypothetical proteinchromosome CDS3631636 408 - 0.490196
NA YPA_0378 thiol:disulfide interchange protein DsbCchromosome CDS441848 717 + 0.456067
NA YPA_1729 hypothetical proteinchromosome CDS1939076 351 - 0.461538
NA YPA_2436 putative pyrrolidone-carboxylate peptidasechromosome CDS2719819 648 + 0.498457
NA YPA_0075 peptide methionine sulfoxide reductasechromosome CDS93218 639 + 0.532081
NA YPA_4090 DnaJ-like proteinchromosome CDS4606891 834 + 0.5
NA YPA_1768 putative vitamin B12 transport proteinchromosome CDS1986510 555 - 0.445045
NA YPA_2276 putative heat shock proteinchromosome CDS2551212 1353 + 0.543976
NA YPA_2255 bacterioferritin comigratory proteinchromosome CDS2527915 471 + 0.441614
NA YPA_1182 flagellar protein FlgJchromosome CDS1331787 945 + 0.540741
NA YPA_0585 heat shock protein GrpEchromosome CDS667448 579 + 0.47323
NA YPA_1574 peptidase family U7 proteinchromosome CDS1761156 1032 + 0.485465
NA YPA_2105 putative cytochrome c-type biogenesis proteinchromosome CDS2360024 1971 - 0.524099
NA YPA_3908 hypothetical proteinchromosome CDS4399923 1005 - 0.502488
NA YPA_0150 thioredoxin 1chromosome CDS181619 327 + 0.461774
NA YPA_0628 putative SPFH domain proteinchromosome CDS715812 927 + 0.399137
NA YPA_1031 putative glutathione S-transferase-family proteinchromosome CDS1184370 621 - 0.489533
NA YPA_2110 putative heme exporter protein Achromosome CDS2364210 657 - 0.494673
NA YPA_2578 hypothetical proteinchromosome CDS2871054 915 + 0.469945
NA YPA_0256 heat shock proteinchromosome CDS296784 525 - 0.487619
NA YPA_2109 heme exporter protein Bchromosome CDS2363581 660 - 0.521212
NA YPA_2579 hypothetical proteinchromosome CDS2871971 450 + 0.502222
NA YPA_4070 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4586290 534 + 0.47191
NA YPA_3652 putative glutathione S-transferasechromosome CDS4095357 855 - 0.495906
NA YPA_3937 thiol:disulfide interchange proteinchromosome CDS4434928 1788 + 0.522371
NA YPA_2137 Clp ATPasechromosome CDS2394565 2676 - 0.479447
NA YPA_1519 protease IVchromosome CDS1703139 1851 - 0.480281
NA YPA_0724 putative Lon proteasechromosome CDS835794 1623 - 0.514479
NA YPA_2511 putative ABC transport proteinchromosome CDS2798229 1791 - 0.467337
NA YPA_2689 putative alkyl hydroperoxide reductase subunit cchromosome CDS2988374 603 + 0.472637
NA YPA_0765 putative ATPase subunit of ATP-dependent proteasechromosome CDS877017 2643 + 0.592508
NA YPA_4062 chaperone protein DnaKchromosome CDS4575576 1911 + 0.480377
NA YPA_3742 putative stringent starvation protein Achromosome CDS4193297 642 + 0.487539
NA YPA_2333 chaperone protein HscAchromosome CDS2618694 1953 - 0.546339
NA YPA_0052 cell division proteinchromosome CDS68103 1935 - 0.469767
NA YPA_3735 proteasechromosome CDS4186486 1152 - 0.478299
NA YPA_2395 urease accessory proteinchromosome CDS2683341 696 + 0.491379
NA YPA_1501 disulfide bond formation protein Bchromosome CDS1681757 546 - 0.456044
NA YPA_3097 hypothetical proteinchromosome CDS3436705 423 + 0.385343
NA YPA_1679 putative heat shock proteinchromosome CDS1884827 453 + 0.437086
NA YPA_4007 hypothetical proteinchromosome CDS4517526 270 - 0.548148
NA YPA_3402 Clp ATPasechromosome CDS3793749 2604 + 0.53149
NA YPA_3342 hypothetical proteinchromosome CDS3686695 576 + 0.46875
NA YPA_3000 heat shock proteinchromosome CDS3338360 414 + 0.425121
NA YPA_1747 putative ATP-dependent transporterchromosome CDS1960330 747 - 0.455154
NA YPA_3030 putative formate dehydrogenase formation proteinchromosome CDS3373194 930 + 0.495699
NA YPA_3476 glutaredoxinchromosome CDS3881507 249 - 0.514056
NA YPA_0145 peptidyl-prolyl cis-trans isomerase Cchromosome CDS176041 282 - 0.450355
NA YPA_0144 hypothetical proteinchromosome CDS175011 792 - 0.340909
NA YPA_3137 glutamate-ammonia-ligase adenylyltransferasechromosome CDS3479365 2856 - 0.528011
NA YPA_1691 thiol peroxidasechromosome CDS1900202 504 + 0.492063
NA YPA_2203 sulfate transport system permease protein CysTchromosome CDS2473017 834 - 0.53717
NA YPA_0339 putative lipoproteinchromosome CDS399285 780 - 0.489744
NA YPA_2108 putative heme exporter protein Cchromosome CDS2362781 738 - 0.501355
NA YPA_0579 SsrA-binding protein (small protein B)chromosome CDS662736 495 - 0.458586
NA YPA_2102 putative cytochrome c-type biogenesis proteinchromosome CDS2357726 1227 - 0.495518
NA YPA_3049 putative flagellar proteinchromosome CDS3391156 381 - 0.388451
NA YPA_2577 putative thioredoxinchromosome CDS2869990 870 + 0.508046
NA YPA_0120 putative magnesium chelatase family proteinchromosome CDS148766 1524 - 0.534121
NA YPA_3160 hypothetical proteinchromosome CDS3502801 717 + 0.492329
NA YPA_0468 hypothetical proteinchromosome CDS538838 636 - 0.47956
NA YPA_3841 DNA repair protein RadAchromosome CDS4326864 1383 - 0.544469
NA YPA_1718 hypothetical proteinchromosome CDS1925560 1113 - 0.520216
NA YPA_1171 flagella synthesis protein FlgNchromosome CDS1323648 441 - 0.487528
NA YPA_0516 (protein-PII) uridylyltransferasechromosome CDS597438 2682 - 0.491051
NA YPA_1216 flagellar protein FliSchromosome CDS1365674 399 - 0.466165
NA YPA_2786 protein-L-isoaspartate O-methyltransferasechromosome CDS3104911 627 + 0.496013
NA YPA_0255 ATP-binding heat shock proteinchromosome CDS295382 1332 - 0.487988
NA YPA_2982 hypothetical proteinchromosome CDS3318266 879 + 0.505119
NA YPA_2294 putative proteasechromosome CDS2574794 1395 + 0.496057
NA YPA_3302 peptidyl-prolyl cis-trans isomerase Achromosome CDS3639478 570 - 0.452632
NA YPA_2569 peptidyl-prolyl cis-trans isomerase Bchromosome CDS2861880 495 + 0.466667
NA YPA_2653 Trigger factorchromosome CDS2953313 1305 - 0.47433
NA YPA_1746 hypothetical proteinchromosome CDS1959030 1326 - 0.497738
NA YPA_1515 hypothetical proteinchromosome CDS1700454 414 + 0.454106
NA YPA_0658 ATP-dependent Clp protease ATP-binding subunitchromosome CDS745198 2277 + 0.49451
NA YPA_2648 peptidyl-prolyl cis-trans isomerase Dchromosome CDS2945525 1887 - 0.45469
NA YPA_2397 urease accessory proteinchromosome CDS2684871 663 + 0.484163
NA YPA_2766 Clp ATPasechromosome CDS3086146 2574 - 0.479409
NA YPA_3339 hypothetical proteinchromosome CDS3684632 270 - 0.440741
 
Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPO3084 hypothetical proteinchromosome CDS3440306 450 + 0.502222
NA YPO2401 hypothetical proteinchromosome CDS2697627 1224 - 0.497549
NA YPO1431 putative Lon proteasechromosome CDS1623958 1773 - 0.51269
NA YPO2742 putative cytochrome c-type biogenesis proteinchromosome CDS3072352 1227 + 0.495518
NA YPO2855 putative proteasechromosome CDS3191246 1395 + 0.496057
NA YPO3082 putative thioredoxinchromosome CDS3438325 870 + 0.508046
NA YPO0630 hypothetical proteinchromosome CDS689923 717 - 0.492329
NA YPO0130 hypothetical proteinchromosome CDS141277 270 + 0.440741
NA YPO0127 hypothetical proteinchromosome CDS138908 576 - 0.46875
NA YPO0176 hypothetical proteinchromosome CDS196094 408 + 0.490196
NA YPO0806 prepilin peptidasechromosome CDS885548 843 - 0.358244
NA YPO1947 putative thioredoxinchromosome CDS2209511 498 + 0.473896
NA YPO2158 methionine sulfoxide reductase Bchromosome CDS2428492 414 + 0.454106
NA YPO0953 hypothetical proteinchromosome CDS1051868 273 + 0.410256
NA YPO1342 putative SPFH domain proteinchromosome CDS1505975 927 + 0.399137
NA YPO3639 putative glutathione S-transferasechromosome CDS4060304 855 - 0.495906
NA YPO1107 heat shock protein GrpEchromosome CDS1250712 579 + 0.47323
NA YPO2072 hypothetical proteinchromosome CDS2352409 699 + 0.549356
NA YPO0695 hypothetical proteinchromosome CDS756287 423 - 0.385343
NA YPO3641 hypothetical proteinchromosome CDS4062862 1176 - 0.460884
NA YPO2372 hypothetical proteinchromosome CDS2664395 1113 - 0.520216
NA YPO1706 heat shock protein HtpXchromosome CDS1946824 882 + 0.470522
NA YPO1314 putative glutathione S-transferase-family proteinchromosome CDS1478270 621 - 0.489533
NA YPO3083 hypothetical proteinchromosome CDS3439389 915 + 0.469945
NA YPO3821 hypothetical proteinchromosome CDS4287625 255 - 0.513726
NA YPO3916 putative peroxiredoxin/glutaredoxin family proteinchromosome CDS4398338 732 + 0.463115
NA YPO2403 hypothetical proteinchromosome CDS2699859 1512 - 0.494048
NA YPO2383 hypothetical proteinchromosome CDS2677911 351 - 0.461538
NA YPO0572 hypothetical proteinchromosome CDS616951 381 - 0.464567
NA YPO3480 hypothetical proteinchromosome CDS3885817 879 + 0.505119
NA YPO0275 hypothetical proteinchromosome CDS275051 270 + 0.548148
NA YPO3874 hypothetical proteinchromosome CDS4349644 792 + 0.340909
NA YPO0927 putative lipoproteinchromosome CDS1018815 753 + 0.488712
NA YPMT1.49c putative lipoproteinpMT1 CDS50146 831 - 0.515042
NA YPO2840 putative heat shock proteinchromosome CDS3169623 1353 + 0.543976
NA YPO3902 putative magnesium chelatase family proteinchromosome CDS4375698 1524 + 0.534121
NA YPO0398 M48 peptidase family proteinchromosome CDS414848 1047 - 0.526266
NA YPO1471 putative ATPase subunit of ATP-dependent proteasechromosome CDS1663153 2643 + 0.592508
NA YPO0392 hypothetical proteinchromosome CDS408824 723 + 0.304288
NA YPO3479 putative proteasechromosome CDS3884810 996 + 0.5251
NA YPO0801 hypothetical proteinchromosome CDS881326 636 + 0.47956
NA YPO3374 hypothetical proteinchromosome CDS3762687 672 - 0.491071
NA YPO2588 putative ABC transport proteinchromosome CDS2910755 1896 + 0.464135
NA YPO2402 putative ATP-dependent transporterchromosome CDS2698927 747 - 0.455154
aat YPO1371 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1539144 711 - 0.495077
ahpC YPO3194 putative alkyl hydroperoxide reductase subunit cchromosome CDS3555984 603 + 0.472637
bcp YPO3064 bacterioferritin comigratory proteinchromosome CDS3420930 474 + 0.440928
btuE YPO2424 putative vitamin B12 transport proteinchromosome CDS2725126 555 - 0.445045
ccmA YPO2734 putative heme exporter protein Achromosome CDS3066438 657 + 0.494673
ccmB YPO2735 heme exporter protein Bchromosome CDS3067064 660 + 0.521212
ccmC YPO2736 putative heme exporter protein Cchromosome CDS3067786 738 + 0.501355
ccmE YPO2738 putative cytochrome c-type biogenesis proteinchromosome CDS3068819 495 + 0.511111
ccmF YPO2739 putative cytochrome c-type biogenesis proteinchromosome CDS3069310 1971 + 0.524099
ccmG YPO2740 thiol:disulfide interchange protein DsbEchromosome CDS3071277 567 + 0.497355
ccmH YPO2741 putative cytochrome c-type biogenesis proteinchromosome CDS3071840 513 + 0.465887
clpA YPO1368 ATP-dependent Clp protease ATP-binding subunitchromosome CDS1535361 2277 + 0.49451
clpB YPO3275 Clp ATPasechromosome CDS3654692 2574 - 0.479021
clpB YPO0506 putative Clp ATPasechromosome CDS539850 2604 + 0.534562
clpB2 YPO3599 Clp ATPasechromosome CDS4006884 2604 + 0.53149
clpB3 YPO0971 Clp ATPasechromosome CDS1076980 2649 - 0.585126
clpB5 YPO2946 Clp ATPasechromosome CDS3289145 2676 - 0.479447
clpP YPO3157 ATP-dependent Clp protease proteolytic subunitchromosome CDS3520559 624 - 0.461538
clpX YPO3156 ATP-dependent protease ATP-binding subunitchromosome CDS3519082 1272 - 0.481132
cydC YPO1372 transport ATP-binding proteinchromosome CDS1540073 1725 - 0.515942
cydD YPO1373 transport ATP-binding proteinchromosome CDS1541800 1785 - 0.505882
cyoE YPO3168 protoheme IX farnesyltransferasechromosome CDS3531536 891 + 0.465769
cysT YPO3014 sulfate transport system permease protein CysTchromosome CDS3367987 834 - 0.53717
degQ YPO3566 proteasechromosome CDS3978818 1374 + 0.487627
degS YPO3568 proteasechromosome CDS3980992 1089 + 0.481175
djlA YPO0496 Dna-J like membrane chaperone proteinchromosome CDS528654 834 + 0.5
dnaJ YPO0469 chaperone protein DnaJchromosome CDS499361 1140 + 0.499123
dnaK YPO0468 molecular chaperone DnaKchromosome CDS497339 1911 + 0.480377
dsbA YPO0015 secreted thiol:disulfide interchange protein DsbAchromosome CDS21806 624 + 0.421474
dsbB YPO2141 disulfide bond formation protein Bchromosome CDS2409795 531 - 0.463277
dsbC YPO0891 thiol:disulfide interchange protein (DsbC)chromosome CDS976288 717 - 0.456067
dsbD YPO0345 thiol:disulfide interchange protein precursorchromosome CDS354798 1788 - 0.522371
fdhE YPO4055 formate dehydrogenase accessory protein FdhEchromosome CDS4573079 930 - 0.495699
fklB YPO3532 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3944826 621 - 0.520129
fkpA YPO0195 peptidyl-prolyl cis-trans isomerasechromosome CDS212265 801 + 0.458177
fkpB YPO0476a FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS508128 459 + 0.481481
flgA YPO0721 flagellar basal body P-ring biosynthesis proteinchromosome CDS781445 714 - 0.512605
flgA YPO1798 flagellar basal body P-ring biosynthesis proteinchromosome CDS2043452 699 - 0.520744
flgJ YPO1807 flagellar biosynthesis proteinchromosome CDS2050679 945 + 0.540741
flgJ YPO0731 putative flagellar proteinchromosome CDS789374 294 + 0.503401
flgN YPO1796 flagella synthesis protein FlgNchromosome CDS2042540 441 - 0.487528
fliJ YPO1826 flagellar proteinchromosome CDS2071648 447 - 0.478747
fliS YPO0741 putative flagellar proteinchromosome CDS801304 381 + 0.388451
fliS YPO1840 flagellar protein FliSchromosome CDS2084555 399 - 0.466165
fliT YPO1839 FliTchromosome CDS2084182 363 - 0.413223
ftsH YPO3502 cell division proteinchromosome CDS3912179 1935 - 0.469767
gcp YPO0646 putative glycoproteasechromosome CDS703713 1014 + 0.518738
glnD YPO1042 PII uridylyl-transferasechromosome CDS1181397 2739 - 0.49215
glnE YPO0653 glutamate-ammonia-ligase adenylyltransferasechromosome CDS711220 2856 + 0.528011
groEL YPO0351 chaperonin GroELchromosome CDS361583 1647 + 0.504554
groES YPO0350 co-chaperonin GroESchromosome CDS361243 294 + 0.489796
grxA YPO1327 glutaredoxin 1chromosome CDS1494106 264 - 0.439394
grxC YPO0066 glutaredoxinchromosome CDS77406 249 + 0.514056
gsrA YPO3382 global stress requirement protein GsrAchromosome CDS3774353 1446 - 0.498617
gst YPO2367 glutathione S-transferasechromosome CDS2660143 606 + 0.455446
hflC YPO0376 hypothetical proteinchromosome CDS391138 1005 + 0.502488
hflK YPO0375 hypothetical proteinchromosome CDS389875 1260 + 0.503175
hmwC YPO3246 putative accessory processing proteinchromosome CDS3612864 1854 - 0.452535
hscA YPO2892 chaperone protein HscAchromosome CDS3235107 1953 - 0.546339
hscB YPO2893 co-chaperone HscBchromosome CDS3237302 525 - 0.506667
hslJ YPO2330 putative heat shock proteinchromosome CDS2621105 453 + 0.437086
hslO YPO0139 Hsp33-like chaperoninchromosome CDS152714 882 - 0.492063
hslU YPO0105 ATP-dependent protease ATP-binding subunitchromosome CDS113213 1332 - 0.487988
hslV YPO0106 ATP-dependent protease peptidase subunitchromosome CDS114615 525 - 0.487619
htpG YPO3119 heat shock protein 90chromosome CDS3475894 1875 - 0.463467
ibpA YPO4085 heat shock proteinchromosome CDS4606676 414 - 0.425121
ibpB YPO4084 heat shock proteinchromosome CDS4605931 465 - 0.488172
lon YPO3155 ATP-dependent protease Lachromosome CDS3516533 2355 - 0.480679
msrA YPO3525 methionine sulfoxide reductase Achromosome CDS3937294 639 + 0.532081
nrdG YPO3455 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS3863261 435 + 0.51954
nrdH YPO2651 putative glutaredoxinchromosome CDS2979500 237 - 0.447257
pcm YPO3357 protein-L-isoaspartate O-methyltransferasechromosome CDS3746383 627 - 0.496013
pcp YPO2703 putative pyrrolidone-carboxylate peptidasechromosome CDS3030775 648 + 0.498457
pflA YPO1381 pyruvate formate-lyase 1 activating enzymechromosome CDS1555542 735 - 0.466667
ppiA YPO0167 peptidyl-prolyl cis-trans isomerase Achromosome CDS186131 570 + 0.452632
ppiB YPO3074 peptidyl-prolyl cis-trans isomerase Bchromosome CDS3430215 495 + 0.466667
ppiC YPO3873 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4349124 282 + 0.450355
ppiD YPO3153 peptidyl-prolyl cis-trans isomerase Dchromosome CDS3513856 1887 - 0.45469
ptrA YPO1019 protease III precursorchromosome CDS1153112 2889 + 0.467636
radA YPO0443 DNA repair protein RadAchromosome CDS463823 1383 + 0.544469
slyD YPO0193 peptidyl-prolyl cis-trans isomerasechromosome CDS210924 588 + 0.52551
smpB YPO1101 SsrA-binding proteinchromosome CDS1246000 483 - 0.459627
sohB YPO2216 peptidase family U7 proteinchromosome CDS2489189 1047 + 0.483286
sppA YPO2162 protease IVchromosome CDS2431177 1851 - 0.480281
sspA YPO3561 stringent starvation protein Achromosome CDS3974628 642 - 0.487539
surA YPO0494 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)chromosome CDS524755 1305 - 0.485824
tig YPO3158 trigger factorchromosome CDS3521644 1305 - 0.47433
tpx YPO2342 thiol peroxidasechromosome CDS2636489 504 + 0.492063
trxA YPO3868 thioredoxin 1chromosome CDS4343502 327 - 0.461774
trxB YPO1374 thioredoxin reductasechromosome CDS1544025 963 - 0.515057
trxC YPO3270 thioredoxin 2chromosome CDS3642614 438 + 0.502283
ureE YPO2668 urease accessory proteinchromosome CDS2994309 696 + 0.491379
ureF YPO2669 urease accessory proteinchromosome CDS2995026 687 + 0.490539
ureG YPO2670 urease accessory proteinchromosome CDS2995839 663 + 0.484163
 
Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA y1280 pyrrolidone-carboxylate peptidasechromosome CDS1425707 648 + 0.498457
NA y0816 hypothetical proteinchromosome CDS915174 672 + 0.491071
NA y3189 hypothetical proteinchromosome CDS3511342 636 + 0.47956
NA Y1114 putative serine proteasepMT-1 CDS98281 831 + 0.515042
NA y0944 adhesin system proteinchromosome CDS1063849 1854 + 0.452535
NA y1394 heat shock proteinchromosome CDS1549071 1353 - 0.543976
NA Y1056 hypothetical proteinpMT-1 CDS48264 354 - 0.533898
NA y3669 ATP-dependent proteasechromosome CDS4076150 2604 - 0.534562
NA y1963 hypothetical proteinchromosome CDS2163408 1155 + 0.51342
NA y2739 ATP-dependent proteasechromosome CDS3021964 1773 + 0.51269
NA y3548 hypothetical proteinchromosome CDS3929900 717 + 0.492329
NA y0334 two-component regulatorchromosome CDS368467 1545 - 0.532686
NA y3482 hypothetical proteinchromosome CDS3865823 423 + 0.385343
NA y0705 hypothetical proteinchromosome CDS792071 900 - 0.506667
NA y0354 glutamine cyclotransferasechromosome CDS395253 792 - 0.340909
NA y3784 peptidasechromosome CDS4204696 1047 + 0.526266
NA y1095 hypothetical proteinchromosome CDS1235010 450 - 0.502222
NA y1936 ATP-binding component of a transport systemchromosome CDS2134558 774 + 0.459948
NA y2363 thioredoxin-family proteinchromosome CDS2606790 531 - 0.468927
NA y0988 peroxidasechromosome CDS1119184 603 - 0.472637
NA y0409 hypothetical proteinchromosome CDS457677 396 + 0.467172
NA y0227 hypothetical proteinchromosome CDS239254 1176 + 0.460884
NA y0535 hypothetical proteinchromosome CDS601882 270 + 0.548148
NA y1538 Clp ATPasechromosome CDS1702814 2751 + 0.475463
NA y1575 cytochrome c-type biogenesis proteinchromosome CDS1740956 1227 + 0.495518
NA y0229 hypothetical proteinchromosome CDS242133 855 + 0.495906
NA y3195 type IV prepilin peptidasechromosome CDS3515572 915 - 0.357377
NA y3957 hypothetical proteinchromosome CDS4417198 408 + 0.490196
NA y3613 hypothetical proteinchromosome CDS4005512 180 + 0.527778
NA y3909 hypothetical proteinchromosome CDS4364349 279 + 0.437276
NA y1937 hypothetical proteinchromosome CDS2135306 1326 + 0.497738
NA y1031 protease maturation proteinchromosome CDS1161987 1887 + 0.45469
NA y3903 hypothetical proteinchromosome CDS4361988 576 - 0.46875
NA y3534 O-sialoglycoprotein endopeptidasechromosome CDS3917772 1029 - 0.516035
NA y2164 methionine sulfoxide reductase Bchromosome CDS2391287 471 - 0.443737
NA y2871 transferasechromosome CDS3168739 723 + 0.481328
NA y3447 hypothetical proteinchromosome CDS3834214 294 - 0.503401
NA y0706 collagenasechromosome CDS792961 996 - 0.5251
NA y1096 proteasechromosome CDS1235462 915 - 0.469945
NA y3311 hypothetical proteinchromosome CDS3646857 780 + 0.489744
NA y1935 hypothetical proteinchromosome CDS2132888 1512 + 0.494048
NA y3340 hypothetical proteinchromosome CDS3679946 273 + 0.410256
NA y1574 cytochrome c-type biogenesis proteinchromosome CDS1740444 513 + 0.465887
NA y1158 ABC transporter, ATP-binding proteinchromosome CDS1307011 1791 + 0.467337
NA y1379 hypothetical proteinchromosome CDS1527407 1395 - 0.496057
NA y2238 hypothetical proteinchromosome CDS2466377 753 - 0.544489
NA y3791 hypothetical proteinchromosome CDS4211044 723 - 0.304288
NA y0319 peroxiredoxin family proteinchromosome CDS346619 732 - 0.463115
NA y1953 hypothetical proteinchromosome CDS2155983 366 + 0.459016
NA y0112 transferasechromosome CDS122056 936 + 0.49359
NA y1097 thioredoxin-like proteinchromosome CDS1236571 870 - 0.508046
aat y2806 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS3109812 735 + 0.491156
bcp y1417 bacterioferritin comigratory proteinchromosome CDS1573250 474 - 0.443038
btuE y1915 vitamin B12-binding periplasmic protein of vitamin B12 ABC transporterchromosome CDS2108578 555 + 0.445045
ccmA y1567 ATP binding protein of heme exporter Achromosome CDS1735042 657 + 0.494673
ccmB y1568 heme exporter protein Bchromosome CDS1735641 687 + 0.519651
ccmC y1569 heme exporter protein Cchromosome CDS1736390 738 + 0.501355
ccmE y1571 heme lyasechromosome CDS1737423 495 + 0.511111
ccmF y1572 cytochrome c-type biogenesis proteinchromosome CDS1737914 1971 + 0.524099
clpA y2809 ATP-binding component of serine proteasechromosome CDS3112053 2283 - 0.494963
clpB y3362 proteasechromosome CDS3705087 2649 - 0.585126
clpB y0275 heat shock proteinchromosome CDS293817 2604 - 0.53149
clpB y2699 heat shock proteinchromosome CDS2981840 2640 - 0.592424
clpB y0914 heat shock proteinchromosome CDS1021277 2595 + 0.478613
clpP y1027 ATP-dependent Clp protease proteolytic subunitchromosome CDS1156547 624 + 0.461538
clpX y1028 ATP-dependent protease ATP-binding subunitchromosome CDS1157376 1272 + 0.481132
cydC y2805 ATP-binding component of cytochrome-related transportchromosome CDS3107893 1725 + 0.515942
cydD y2803 ATP-binding component of cytochrome-related transportchromosome CDS3106106 1785 + 0.505882
cyoE y1018 protoheme IX farnesyltransferasechromosome CDS1145303 909 - 0.465347
cysU y1467 inner membrane permease T of sulfate/thiosulfate ABC transporterchromosome CDS1625825 834 + 0.53717
degQ y0137 serine endoproteasechromosome CDS148564 1392 + 0.484914
degS y0139 proteasechromosome CDS150756 1089 + 0.481175
djlA y3679 Dna-J like membrane chaperone proteinchromosome CDS4089116 834 - 0.5
dnaJ y3705 chaperone with DnaK; heat shock proteinchromosome CDS4118103 1140 - 0.499123
dnaK y3706 molecular chaperone DnaKchromosome CDS4119354 1911 - 0.480377
dsbA y3812 protein disulfide isomerase Ichromosome CDS4236383 624 - 0.421474
dsbB y2179 disulfide bond formation protein Bchromosome CDS2409820 579 + 0.455959
dsbC y3275 protein disulfide isomerase IIchromosome CDS3606320 717 - 0.456067
dsbD y0603 thiol:disulfide interchange protein precursorchromosome CDS680946 1788 - 0.522371
dsbE y1573 disulfide oxidoreductasechromosome CDS1739881 567 + 0.497355
fdhE y4075 formate dehydrogenase accessory protein FdhEchromosome CDS4519865 930 - 0.495699
fklB y0651 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS733296 621 + 0.520129
fkpA y3977 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4433330 840 + 0.458333
flgA y2511 flagellar basal body P-ring biosynthesis proteinchromosome CDS2772500 765 + 0.517647
flgJ y2502 flagellar biosynthesis proteinchromosome CDS2765093 945 - 0.540741
flgN y2514 flagellar biosynthesis proteinchromosome CDS2773733 444 + 0.488739
fliJ y2480 flagellar proteinchromosome CDS2744765 447 + 0.478747
fliS y2467 flagellar protein FliSchromosome CDS2731874 399 + 0.466165
fliT y2468 repressor of class 3a and 3b operons (RflA activity)chromosome CDS2732232 414 + 0.425121
glnD y3139 PII uridylyl-transferasechromosome CDS3450658 2739 + 0.49215
glnE y3525 adenylylating enzyme for glutamine synthetasechromosome CDS3908423 2883 - 0.527229
groEL y0609 chaperonin GroELchromosome CDS687731 1647 + 0.504554
groES y0608 co-chaperonin GroESchromosome CDS687391 294 + 0.489796
grpE y3073 heat shock proteinchromosome CDS3383536 579 - 0.47323
grxA y2855 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS3153362 264 + 0.439394
grxC y0075 glutaredoxin 3chromosome CDS83726 249 - 0.514056
gst y1968 glutathionine S-transferasechromosome CDS2168209 609 - 0.456486
hflB y0682 integral membrane peptidase, cell division proteinchromosome CDS764620 1944 + 0.46965
hflC y0634 protease specific for phage lambda cII repressorchromosome CDS716498 1005 + 0.502488
hflC y2843 ftsH proteinase activity modulatorchromosome CDS3142789 927 - 0.399137
hflK y0633 protease specific for phage lambda cII repressorchromosome CDS715235 1260 + 0.503175
hscA y1339 chaperone protein HscAchromosome CDS1483166 1935 + 0.547804
hscB y1338 co-chaperone HscBchromosome CDS1482399 525 + 0.506667
hslJ y2003 heat shock protein HslJchromosome CDS2205442 453 - 0.437086
hslO y3919 Hsp33-like chaperoninchromosome CDS4375795 882 - 0.492063
hslU y0294 ATP-dependent protease ATP-binding subunitchromosome CDS312872 1332 - 0.487988
hslV y0295 ATP-dependent protease peptidase subunitchromosome CDS314274 525 - 0.487619
htpG y1064 heat shock protein 90chromosome CDS1198004 1875 + 0.463467
htpX y1868 heat shock protein HtpXchromosome CDS2062129 882 + 0.470522
htrA y0807 periplasmic serine protease Dochromosome CDS902759 1446 + 0.498617
ibpA y4102 heat shock proteinchromosome CDS4553462 414 - 0.425121
ibpB y4101 heat shock proteinchromosome CDS4552717 507 - 0.481262
lfgA y3457 flagellar basal body P-ring biosynthesis proteinchromosome CDS3840808 918 + 0.486928
lon y1029 DNA-binding ATP-dependent protease La; heat shock K-proteinchromosome CDS1158788 2409 + 0.479867
msrA y0658 methionine sulfoxide reductase Achromosome CDS740810 639 - 0.532081
nrdG y0732 anaerobic ribonucleotide reductase activating proteinchromosome CDS815071 435 - 0.51954
nrdH y1225 glutaredoxin-like proteinchromosome CDS1375806 237 - 0.447257
pcm y0832 protein-L-isoaspartate O-methyltransferasechromosome CDS931543 627 + 0.496013
pflA y2792 pyruvate formate lyase activating enzyme 1chromosome CDS3091400 798 + 0.463659
ppiA y3951 peptidyl-prolyl cis-trans isomerase Achromosome CDS4409170 600 + 0.453333
ppiB y1106 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1245056 495 - 0.466667
ppiC y0355 peptidyl-prolyl cis-trans isomerase Cchromosome CDS396283 297 - 0.447811
ptr y3165 protease IIIchromosome CDS3480752 2889 - 0.467636
slpA y3698 FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS4110017 534 - 0.47191
slyD y3975 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4432028 588 + 0.52551
smpB y3079 SsrA-binding proteinchromosome CDS3388332 495 + 0.458586
sms y3737 ATP-dependent proteasechromosome CDS4155353 1383 - 0.544469
sohB y2057 proteasechromosome CDS2265449 1047 + 0.483286
sppA y2160 protease IV, a signal peptide peptidasechromosome CDS2387165 1851 + 0.480281
sspA y0132 stringent starvation protein Achromosome CDS144392 642 - 0.487539
surA y3681 survival proteinchromosome CDS4092544 1305 + 0.485824
tig y1026 trigger factorchromosome CDS1154781 1305 + 0.47433
tpx y1990 thiol peroxidasechromosome CDS2190007 576 - 0.473958
trxA y0360 thioredoxin 1chromosome CDS401861 327 + 0.461774
trxB y2802 thioredoxin reductasechromosome CDS3104703 963 + 0.515057
trxC y0919 thioredoxin-like proteinchromosome CDS1035512 438 - 0.502283
ureE y1240 urease accessory proteinchromosome CDS1389215 705 + 0.49078
ureF y1241 urease accessory proteinchromosome CDS1389941 687 + 0.490539
ureG y1242 urease accessory proteinchromosome CDS1390754 663 + 0.484163
 
Yersinia pestis Nepal516, Nepal516
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPN_0342 chaperone protein DnaJchromosome CDS418564 1140 + 0.499123
NA YPN_3729 heat shock proteinchromosome CDS4282254 414 - 0.425121
NA YPN_2982 protease III precursorchromosome CDS3348571 2889 - 0.467636
NA YPN_3728 heat shock proteinchromosome CDS4281509 465 - 0.488172
NA YPN_3246 cell division proteinchromosome CDS3705096 1935 - 0.469767
NA YPN_0588 flagellar proteinchromosome CDS697580 294 + 0.503401
NA YPN_3010 prepilin peptidasechromosome CDS3383410 843 - 0.358244
NA YPN_0051 peroxiredoxin/glutaredoxin family proteinchromosome CDS74681 732 - 0.463115
NA YPN_2211 heme exporter protein Cchromosome CDS2497008 738 - 0.501355
NA YPN_3124 lipoproteinchromosome CDS3514711 753 + 0.488712
NA YPN_1244 chaperone protein HscBchromosome CDS1412285 525 + 0.506667
NA YPN_0381 Clp ATPasechromosome CDS459068 2589 + 0.534569
NA YPN_0607 hypothetical proteinchromosome CDS720427 879 - 0.505119
NA YPN_2297 flagellar protein FliJchromosome CDS2579892 447 + 0.478747
NA YPN_3573 Clp ATPasechromosome CDS4080639 2604 - 0.53149
NA YPN_0937 peptidyl-prolyl cis-trans isomerase Dchromosome CDS1089838 1887 + 0.45469
NA YPN_3325 thiol:disulfide interchange proteinchromosome CDS3789048 1788 + 0.522371
NA YPN_1321 bacterioferritin comigratory proteinchromosome CDS1503172 471 - 0.441614
NA YPN_1283 proteasechromosome CDS1457327 1395 - 0.496057
NA YPN_3392 hypothetical proteinchromosome CDS3869594 270 - 0.548148
NA YPN_2897 SsrA-binding protein (small protein B)chromosome CDS3257380 495 + 0.458586
NA YPN_1137 hypothetical proteinchromosome CDS1305732 237 - 0.447257
NA YPN_3296 membrane proteinchromosome CDS3755165 1260 - 0.503175
NA YPN_0633 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS743426 435 - 0.51954
NA YPN_3295 membrane proteinchromosome CDS3754157 1005 - 0.502488
NA YPN_1856 hypothetical proteinchromosome CDS2096081 1326 - 0.497738
NA YPN_0065 magnesium chelatase family proteinchromosome CDS96530 1524 - 0.534121
NA YPN_2208 cytochrome c-type biogenesis proteinchromosome CDS2494251 1971 - 0.524099
NA YPN_2205 cytochrome c-type biogenesis proteinchromosome CDS2491954 1227 - 0.495518
NA YPN_3784 glutaredoxinchromosome CDS4336143 249 - 0.514056
NA YPN_2283 flagellar protein FliSchromosome CDS2567001 399 + 0.466165
NA YPN_1315 hypothetical proteinchromosome CDS1498331 1485 - 0.504377
NA YPN_1549 hypothetical proteinchromosome CDS1761021 699 + 0.549356
NA YPN_0970 heat shock protein HtpGchromosome CDS1125854 1875 + 0.463467
NA YPN_3531 glutathione S-transferasechromosome CDS4028953 855 + 0.495906
NA YPN_2207 thiol:disulfide interchange protein DsbEchromosome CDS2493535 720 - 0.495833
NA YPN_3269 peptide methionine sulfoxide reductasechromosome CDS3730211 639 + 0.532081
NA YPN_0935 ATP-dependent protease Lachromosome CDS1086639 2409 + 0.479867
NA YPN_1838 hypothetical proteinchromosome CDS2076364 351 - 0.461538
NA YPN_0341 chaperone protein DnaKchromosome CDS416542 1911 + 0.480377
NA YPN_0934 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS1085227 1272 + 0.481132
NA YPN_0268 M48 peptidase family proteinchromosome CDS334056 1047 - 0.526266
NA YPN_1298 heat shock proteinchromosome CDS1478992 1353 - 0.543976
NA YPN_2652 glutaredoxin 1chromosome CDS2989379 264 + 0.439394
NA YPN_1802 thiol peroxidasechromosome CDS2038639 504 + 0.492063
NA YPN_MT0087 DNA-binding proteinpMT CDS92536 1392 + 0.483477
NA YPN_1153 urease accessory proteinchromosome CDS1319840 687 + 0.490539
NA YPN_1016 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1174940 495 - 0.466667
NA YPN_1155 hypothetical proteinchromosome CDS1321312 834 + 0.482014
NA YPN_1829 hypothetical proteinchromosome CDS2064580 1113 - 0.520216
NA YPN_3151 hypothetical proteinchromosome CDS3547772 273 + 0.410256
NA YPN_3748 ATP-binding heat shock proteinchromosome CDS4300273 1332 + 0.487988
NA YPN_2596 pyruvate formate-lyase 1 activating enzymechromosome CDS2927465 735 + 0.466667
NA YPN_2206 cytochrome c-type biogenesis proteinchromosome CDS2493180 678 - 0.477876
NA YPN_2209 cytochrome c-type biogenesis proteinchromosome CDS2496218 495 - 0.511111
NA YPN_3170 Clp ATPasechromosome CDS3572963 2649 - 0.585126
NA YPN_3897 peptidyl-prolyl cis-trans isomerase Achromosome CDS4431594 570 - 0.452632
NA YPN_0848 accessory processing proteinchromosome CDS990856 1854 + 0.452535
NA YPN_1152 urease accessory proteinchromosome CDS1319123 696 + 0.491379
NA YPN_3529 hypothetical proteinchromosome CDS4026074 1176 + 0.460884
NA YPN_3276 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3737743 621 - 0.520129
NA YPN_1245 chaperone protein HscAchromosome CDS1413052 1953 + 0.546339
NA YPN_0243 secreted thiol:disulfide interchange protein DsbAchromosome CDS302792 624 + 0.421474
NA YPN_3872 peptidyl-prolyl cis-trans isomerasechromosome CDS4407188 801 - 0.458177
NA YPN_2959 (protein-PII) uridylyltransferasechromosome CDS3319782 2682 + 0.491051
NA YPN_3450 proteasechromosome CDS3937496 1152 + 0.478299
NA YPN_1073 ABC transport proteinchromosome CDS1236912 1791 + 0.467337
NA YPN_2891 heat shock protein GrpEchromosome CDS3252584 579 - 0.47323
NA YPN_0435 hypothetical proteinchromosome CDS532132 180 - 0.527778
NA YPN_0718 hypothetical proteinchromosome CDS844161 672 + 0.491071
NA YPN_3747 heat shock proteinchromosome CDS4299678 525 + 0.487619
NA YPN_2665 glutathione S-transferase-family proteinchromosome CDS3004857 621 + 0.489533
NA YPN_0368 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)chromosome CDS443958 1305 - 0.485824
NA YPN_1154 urease accessory proteinchromosome CDS1320653 663 + 0.484163
NA YPN_2212 heme exporter protein Bchromosome CDS2497808 660 - 0.521212
NA YPN_1624 hypothetical proteinchromosome CDS1837106 414 + 0.454106
NA YPN_2642 SPFH domain proteinchromosome CDS2978806 927 - 0.399137
NA YPN_3891 hypothetical proteinchromosome CDS4423752 408 - 0.490196
NA YPN_3005 hypothetical proteinchromosome CDS3379188 636 + 0.47956
NA YPN_0263 hypothetical proteinchromosome CDS328032 723 + 0.304288
NA YPN_3448 proteasechromosome CDS3935385 1374 + 0.487627
NA YPN_1369 sulfate transport system permease protein CysTchromosome CDS1555748 834 + 0.53717
NA YPN_1857 ATP-dependent transporterchromosome CDS2097381 747 - 0.455154
NA YPN_2284 FliTchromosome CDS2567410 363 + 0.413223
NA YPN_0441 hypothetical proteinchromosome CDS534235 381 - 0.464567
NA YPN_0513 glutamate-ammonia-ligase adenylyltransferasechromosome CDS620791 2856 + 0.528011
NA YPN_3874 peptidyl-prolyl cis-trans isomerasechromosome CDS4408742 588 - 0.52551
NA YPN_3443 stringent starvation protein Achromosome CDS3931195 642 - 0.487539
NA YPN_1824 glutathione S-transferasechromosome CDS2060328 606 + 0.455446
NA YPN_1789 heat shock proteinchromosome CDS2023255 453 + 0.437086
NA YPN_0370 DnaJ-like proteinchromosome CDS447857 834 + 0.5
NA YPN_3320 10 kDa chaperoninchromosome CDS3784097 294 - 0.489796
NA YPN_3702 formate dehydrogenase formation proteinchromosome CDS4248657 930 - 0.495699
NA YPN_2328 flagella synthesis protein FlgNchromosome CDS2609006 441 + 0.487528
NA YPN_2317 flagellar protein FlgJchromosome CDS2600363 945 - 0.540741
NA YPN_1878 vitamin B12 transport proteinchromosome CDS2123580 555 - 0.445045
NA YPN_0506 glycoproteasechromosome CDS613284 1014 + 0.518738
NA YPN_3427 hypothetical proteinchromosome CDS3908972 936 + 0.49359
NA YPN_2612 ATP-dependent Clp protease ATP-binding subunitchromosome CDS2948071 2277 - 0.49451
NA YPN_0095 thioredoxin 1chromosome CDS129883 327 + 0.461774
NA YPN_3090 thiol:disulfide interchange protein DsbCchromosome CDS3474143 717 - 0.456067
NA YPN_0821 Clp ATPasechromosome CDS950275 2574 + 0.479409
NA YPN_0893 alkyl hydroperoxide reductase subunit cchromosome CDS1046324 603 - 0.472637
NA YPN_0709 global stress requirement protein GsrAchromosome CDS831712 1446 + 0.498617
NA YPN_2608 transport ATP-binding proteinchromosome CDS2943911 1725 + 0.515942
NA YPN_0090 peptidyl-prolyl cis-trans isomerase Cchromosome CDS124305 282 - 0.450355
NA YPN_0579 flagella basal body P-ring formation proteinchromosome CDS690362 918 - 0.486928
NA YPN_3935 hypothetical proteinchromosome CDS4476784 270 - 0.440741
NA YPN_0736 protein-L-isoaspartate O-methyltransferasechromosome CDS860528 627 + 0.496013
NA YPN_MT0051 lipoproteinpMT CDS50145 831 - 0.515042
NA YPN_0826 thioredoxin 2chromosome CDS964489 438 - 0.502283
NA YPN_3938 hypothetical proteinchromosome CDS4478847 576 + 0.46875
NA YPN_2508 ATPase subunit of ATP-dependent proteasechromosome CDS2817901 2643 - 0.592508
NA YPN_0553 membrane proteinchromosome CDS665824 423 - 0.385343
NA YPN_1005 membrane proteinchromosome CDS1164184 450 - 0.502222
NA YPN_0314 DNA repair protein RadAchromosome CDS383032 1383 + 0.544469
NA YPN_2547 Lon proteasechromosome CDS2858179 1623 + 0.514479
NA YPN_1610 disulfide bond formation protein Bchromosome CDS1818408 546 - 0.456044
NA YPN_1007 thioredoxinchromosome CDS1165745 870 - 0.508046
NA YPN_0143 hypothetical proteinchromosome CDS185699 396 + 0.467172
NA YPN_0493 hypothetical proteinchromosome CDS601453 717 - 0.492329
NA YPN_1006 hypothetical proteinchromosome CDS1164636 915 - 0.469945
NA YPN_0349 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS427256 534 + 0.47191
NA YPN_1924 heat shock proteinchromosome CDS2171043 882 - 0.470522
NA YPN_3319 60 kDa chaperoninchromosome CDS3782404 1647 - 0.504554
NA YPN_1434 Clp ATPasechromosome CDS1632812 2676 + 0.479447
NA YPN_0089 hypothetical proteinchromosome CDS123275 792 - 0.340909
NA YPN_2606 thioredoxin reductasechromosome CDS2940721 963 + 0.515057
NA YPN_3926 heat-shock chaperoninchromosome CDS4464735 882 + 0.492063
NA YPN_1191 pyrrolidone-carboxylate peptidasechromosome CDS1355606 648 + 0.498457
NA YPN_2213 heme exporter protein Achromosome CDS2498437 657 - 0.494673
NA YPN_2609 leucyl/phenylalanyl-tRNA-protein transferasechromosome CDS2945854 711 + 0.495077
NA YPN_1628 protease IVchromosome CDS1839791 1851 - 0.480281
NA YPN_0932 Trigger factorchromosome CDS1082632 1305 + 0.47433
NA YPN_1858 hypothetical proteinchromosome CDS2098313 1512 - 0.494048
NA YPN_0933 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS1084398 624 + 0.461538
NA YPN_1683 peptidase family U7 proteinchromosome CDS1897851 1032 + 0.485465
NA YPN_0608 proteasechromosome CDS721317 996 - 0.5251
 
Yersinia pestis biovar Microtus str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP_2856 Predicted protein-disulfide isomerasechromosome CDS3168761 636 - 0.47956
NA YP_3171 hypothetical proteinchromosome CDS3539104 792 - 0.340909
NA YP_2721 putative proteasechromosome CDS3021913 1395 + 0.496057
NA YP_1958 methionine sulfoxide reductase Bchromosome CDS2177561 471 + 0.443737
NA YP_0604 putative proteasechromosome CDS647916 996 - 0.5251
NA YP_0603 Collagenase and related proteasechromosome CDS647026 900 - 0.506667
NA YP_0840 hypothetical proteinchromosome CDS912843 450 - 0.502222
NA YP_3146 putative magnesium chelatase family proteinchromosome CDS3513683 1524 - 0.534121
NA YP_2169 Glutaredoxin-related proteinschromosome CDS2414422 366 - 0.459016
NA YP_0175 Predicted redox protein, regulator of disulfide bond formationchromosome CDS194825 408 + 0.490196
NA YP_0128 Thioredoxin-like proteins and domainschromosome CDS139634 576 - 0.46875
NA YP_1915 Inactive homologs of metal-dependent protease, putative molecular chaperoneschromosome CDS2134239 753 + 0.544489
NA YP_2188 Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufBchromosome CDS2434134 1326 - 0.497738
NA YP_pMT064 putative lipoproteinpMT1 CDS54516 831 - 0.515042
NA YP_2189 putative ATP-dependent transporterchromosome CDS2435434 774 - 0.459948
NA YP_2190 Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufBchromosome CDS2436366 1512 - 0.494048
NA YP_0842 putative thioredoxinchromosome CDS914404 870 - 0.508046
NA YP_2158 hypothetical proteinchromosome CDS2400906 1155 - 0.51342
NA YP_2947 Predicted protein-disulfide isomerasechromosome CDS3282752 603 - 0.487562
NA YP_3488 hypothetical proteinchromosome CDS3967127 273 - 0.413919
NA YP_0131 hypothetical proteinchromosome CDS141994 279 + 0.437276
aHP1 YP_3132 putative peroxiredoxin/glutaredoxin family proteinchromosome CDS3491829 732 - 0.463115
aat YP_1222 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1336152 735 + 0.491156
ahpC YP_0737 putative alkyl hydroperoxide reductase subunit cchromosome CDS798919 603 - 0.472637
bcp YP_2686 bacterioferritin comigratory proteinchromosome CDS2976976 474 + 0.443038
btuE YP_2211 putative vitamin B12 transport proteinchromosome CDS2461655 555 - 0.445045
ccmA3 YP_2430 putative heme exporter protein Achromosome CDS2699366 657 - 0.494673
ccmB YP_2429 heme exporter protein Bchromosome CDS2698737 687 - 0.519651
ccmC2 YP_2428 putative heme exporter protein Cchromosome CDS2697937 738 - 0.501355
ccmE YP_2426 putative cytochrome c-type biogenesis proteinchromosome CDS2697147 495 - 0.511111
ccmF YP_2425 putative cytochrome c-type biogenesis proteinchromosome CDS2695180 1971 - 0.524099
ccmG YP_2424 thiol:disulfide interchange protein DsbEchromosome CDS2694617 567 - 0.499118
ccmH YP_2423 putative cytochrome c-type biogenesis proteinchromosome CDS2694108 513 - 0.465887
clpA1 YP_1225 ATP-dependent Clp protease ATP-binding subunitchromosome CDS1338378 2283 - 0.494963
clpA2 YP_1362 putative ATPase subunit of ATP-dependent proteasechromosome CDS1492058 2643 + 0.592508
clpA3 YP_2573 putative Clp ATPasechromosome CDS2848518 2751 - 0.475463
clpB1 YP_0656 Clp ATPasechromosome CDS701023 2595 + 0.478613
clpB2 YP_3673 putative Clp ATPasechromosome CDS4183297 2604 - 0.534562
clpB3 YP_3467 Clp ATPasechromosome CDS3939616 2649 + 0.585504
clpB4 YP_3951 Clp ATPasechromosome CDS4496625 2604 - 0.53149
clpP YP_0774 ATP-dependent Clp protease proteolytic subunitchromosome CDS834343 624 + 0.461538
clpX YP_0775 ATP-dependent protease ATP-binding subunitchromosome CDS835172 1272 + 0.481132
cydC YP_1221 transport ATP-binding proteinchromosome CDS1334233 1725 + 0.516522
cydD YP_1220 transport ATP-binding proteinchromosome CDS1332446 1785 + 0.505882
cyoE YP_0763 protoheme IX farnesyltransferasechromosome CDS823099 909 - 0.464246
cysT YP_2638 sulfate transport system permease protein CysTchromosome CDS2926515 834 - 0.53717
degQ YP_3821 proteasechromosome CDS4350316 1374 + 0.487627
degS YP_3823 proteasechromosome CDS4352490 1089 + 0.481175
djlA YP_3683 Dna-J like membrane chaperone proteinchromosome CDS4196263 834 - 0.5
dnaJ2 YP_3711 chaperone protein DnaJchromosome CDS4224539 1140 - 0.499123
dnaK YP_3712 molecular chaperone DnaKchromosome CDS4225790 1911 - 0.480377
dnaK1 YP_2707 putative heat shock proteinchromosome CDS3000286 1356 + 0.54351
dsbA YP_0017 secreted thiol:disulfide interchange protein DsbAchromosome CDS21601 624 + 0.421474
dsbB YP_1944 disulfide bond formation protein Bchromosome CDS2158921 579 - 0.455959
dsbC YP_3587 thiol:disulfide interchange protein (DsbC)chromosome CDS4081229 717 - 0.456067
dsbD YP_0499 thiol:disulfide interchange protein precursorchromosome CDS535824 1788 - 0.521812
fdhE YP_3967 formate dehydrogenase accessory protein FdhEchromosome CDS4514163 930 - 0.495699
fklB YP_0551 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS588252 621 + 0.520129
fkpA YP_0194 peptidyl-prolyl cis-trans isomerasechromosome CDS210938 840 + 0.458333
flgA YP_1595 flagellar basal body P-ring biosynthesis proteinchromosome CDS1744830 765 + 0.517647
flgJ1 YP_1586 flagellar biosynthesis proteinchromosome CDS1737423 945 - 0.540741
flgJ2 YP_3042 flagellar protein FlgJchromosome CDS3379919 294 + 0.503401
flgN1 YP_1597 flagella synthesis protein FlgNchromosome CDS1746063 444 + 0.488739
fliJ YP_1566 flagellar proteinchromosome CDS1717259 447 + 0.478747
fliS1 YP_1553 flagellar protein FliSchromosome CDS1704347 399 + 0.466165
fliS2 YP_3050 flagellar protein FliSchromosome CDS3388666 381 + 0.388451
fliT YP_1554 repressor of class 3a and 3b operons (RflA activity)chromosome CDS1704705 414 + 0.425121
ftsH YP_0581 cell division proteinchromosome CDS619575 1944 + 0.46965
gcp YP_2961 putative glycoproteasechromosome CDS3295907 1014 + 0.518738
glnD YP_2809 PII uridylyl-transferasechromosome CDS3118948 2739 + 0.49215
glnE YP_2968 adenylylating enzyme for glutamine synthetasechromosome CDS3303258 2883 + 0.527229
groEL YP_0506 chaperonin GroELchromosome CDS542609 1647 + 0.504554
groES YP_0505 co-chaperonin GroESchromosome CDS542269 294 + 0.489796
grpE YP_1049 heat shock protein GrpEchromosome CDS1131639 579 - 0.474957
grxA YP_1265 glutaredoxin 1chromosome CDS1379730 264 + 0.439394
grxC YP_0066 glutaredoxinchromosome CDS77202 249 + 0.514056
gsrA YP_0303 global stress requirement protein GsrAchromosome CDS315425 1446 + 0.498617
gst1 YP_1278 putative glutathione S-transferase-family proteinchromosome CDS1395138 675 + 0.484444
gst2 YP_2153 glutathione S-transferasechromosome CDS2396651 609 + 0.456486
gst3 YP_3908 putative glutathione S-transferasechromosome CDS4443633 855 + 0.495906
hflC1 YP_0532 hypothetical proteinchromosome CDS571454 1005 + 0.502488
hflC2 YP_0841 Membrane protease subunits, stomatin/prohibitin homologschromosome CDS913295 915 - 0.469945
hflC3 YP_1254 putative SPFH domain proteinchromosome CDS1369115 927 - 0.399137
hflK YP_0531 hypothetical proteinchromosome CDS570191 1260 + 0.503175
hmwC YP_0686 putative accessory processing proteinchromosome CDS743601 1854 + 0.452535
hscA YP_2563 chaperone protein HscAchromosome CDS2835801 1938 + 0.546956
hscB YP_2562 co-chaperone HscBchromosome CDS2835058 501 + 0.51497
hslJ YP_2116 putative heat shock proteinchromosome CDS2359574 453 + 0.437086
hslO YP_0140 Hsp33-like chaperoninchromosome CDS153440 882 - 0.492063
hslU YP_0107 ATP-dependent protease ATP-binding subunitchromosome CDS113946 1332 - 0.487988
hslV YP_0108 ATP-dependent protease peptidase subunitchromosome CDS115348 525 - 0.487619
htpG YP_0811 heat shock protein 90chromosome CDS875833 1875 + 0.463467
htpX1 YP_1731 heat shock protein HtpXchromosome CDS1915338 882 + 0.470522
htpX3 YP_3515 Zn-dependent protease with chaperone functionchromosome CDS4001021 780 - 0.489744
htpX4 YP_3783 M48 peptidase family proteinchromosome CDS4309165 1047 + 0.526266
ibpA YP_3994 heat shock proteinchromosome CDS4547741 414 - 0.425121
ibpB YP_3993 heat shock proteinchromosome CDS4546996 507 - 0.481262
lfgA YP_3033 flagellar basal body P-ring biosynthesis proteinchromosome CDS3372701 918 - 0.486928
lon YP_0776 ATP-dependent protease Lachromosome CDS836584 2409 + 0.479867
lonB YP_0876 putative Lon proteasechromosome CDS940148 1752 - 0.514269
mdlB2 YP_1127 putative ABC transport proteinchromosome CDS1206298 1896 - 0.464135
msrA YP_0558 methionine sulfoxide reductase Achromosome CDS595765 639 - 0.532081
mutL2 YP_3789 DNA mismatch repair enzyme (predicted ATPase)chromosome CDS4315336 723 - 0.305671
nrdG1 YP_0312 Organic radical activating enzymechromosome CDS327822 672 + 0.491071
nrdG2 YP_0630 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS670022 435 - 0.51954
nrdH YP_2453 putative glutaredoxinchromosome CDS2727165 237 - 0.447257
nrfG2 YP_2422 putative cytochrome c-type biogenesis proteinchromosome CDS2692882 1227 - 0.495518
pcm YP_0330 protein-L-isoaspartate O-methyltransferasechromosome CDS344188 627 + 0.496013
pcp1 YP_2507 putative pyrrolidone-carboxylate peptidasechromosome CDS2778370 648 + 0.498457
pflA YP_1212 pyruvate formate lyase activating enzyme 1chromosome CDS1319707 798 + 0.463659
ppiA YP_0169 peptidyl-prolyl cis-trans isomerase Achromosome CDS186791 600 + 0.453333
ppiB YP_0851 peptidyl-prolyl cis-trans isomerase Bchromosome CDS922889 495 - 0.466667
ppiC YP_3172 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3540134 297 - 0.447811
ppiD YP_0778 peptidyl-prolyl cis-trans isomerase Dchromosome CDS839783 1887 + 0.45469
pppA1 YP_2850 putative type IV prepilin peptidasechromosome CDS3162945 915 + 0.357377
pppA2 YP_3009 hypothetical proteinchromosome CDS3348229 423 - 0.385343
ptrA YP_2882 protease III precursorchromosome CDS3197098 2889 + 0.467636
radA YP_3739 DNA repair protein RadAchromosome CDS4259856 1383 - 0.544469
sirA1 YP_0430 Predicted redox protein, regulator of disulfide bond formationchromosome CDS454785 270 + 0.548148
sirA2 YP_3227 hypothetical proteinchromosome CDS3601560 396 + 0.467172
slpA2 YP_3703 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS4216453 534 - 0.47191
slyD YP_0191 peptidyl-prolyl cis-trans isomerasechromosome CDS209609 615 + 0.521951
smc3 YP_3906 Chromosome segregation ATPasechromosome CDS4440754 1176 + 0.460884
smpB YP_1055 SsrA-binding proteinchromosome CDS1136435 495 + 0.458586
sohB YP_2013 peptidase family U7 proteinchromosome CDS2235047 1047 + 0.483286
sppA YP_1962 protease IVchromosome CDS2180303 1851 - 0.480821
sspA YP_3815 stringent starvation protein Achromosome CDS4346126 642 - 0.487539
surA YP_3685 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)chromosome CDS4199691 1305 + 0.485824
tig YP_0773 trigger factorchromosome CDS832577 1305 + 0.47433
tpx YP_2129 thiol peroxidasechromosome CDS2374886 576 + 0.473958
trxA1 YP_1691 putative thioredoxin-family proteinchromosome CDS1866240 531 + 0.468927
trxA2 YP_3177 thioredoxin 1chromosome CDS3545676 327 + 0.461774
trxB YP_1219 thioredoxin reductasechromosome CDS1331043 963 + 0.515057
trxC YP_0661 thioredoxin 2chromosome CDS715258 438 - 0.502283
ureE YP_2469 urease accessory proteinchromosome CDS2741883 705 + 0.49078
ureF YP_2470 urease accessory proteinchromosome CDS2742609 687 + 0.490539
ureG YP_2471 urease accessory proteinchromosome CDS2743422 663 + 0.484163
 
Yersinia pestis biovar Orientalis str. IP275, IP275
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YpIP275_pIP1202_0034 ATPase, AAA family domain proteinpIP1202 CDS20519 1443 + 0.512821
NA YpIP275_pIP1202_0014 DSBA-like thioredoxin domain proteinpIP1202 CDS9478 861 + 0.534262
NA YpIP275_pIP1202_0013 signal peptide peptidase SppA domain proteinpIP1202 CDS8485 978 + 0.541922
NA YpIP275_pIP1202_0108 hypothetical proteinpIP1202 CDS82568 708 + 0.516949
NA YpIP275_pIP1202_0081 hypothetical proteinpIP1202 CDS55374 507 + 0.542406
tniB YpIP275_pIP1202_0166 transposition protein TniBpIP1202 CDS132925 861 + 0.656214
 
Yersinia pseudotuberculosis IP 32953, IP32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPTB1368 putative SPFH domain proteinchromosome CDS1630182 927 + 0.399137
NA YPTB3588 hypothetical proteinchromosome CDS4267510 1176 + 0.458333
NA YPTB3370 hypothetical proteinchromosome CDS4004573 423 + 0.399527
NA YPTB1451 putative Lon proteasechromosome CDS1744320 1773 - 0.51269
NA YPTB1082 putative ABC transport protein with fused ATP binding and permease domainschromosome CDS1299831 1791 + 0.471803
NA YPTB1741 putative bacteriophage P2 tail protein gpTchromosome CDS2099162 2427 - 0.568603
NA YPTB3199 putative conserved lipoprotein.chromosome CDS3764057 753 + 0.491368
NA YPTB0495 putative proteasechromosome CDS584883 996 - 0.523092
NA YPTB1945 putative thioredoxinchromosome CDS2287877 531 + 0.468927
NA YPTB1803 hypothetical proteinchromosome CDS2150978 810 + 0.496296
NA YPTB0119 putative peroxiredoxin/glutaredoxin family proteinchromosome CDS141499 732 - 0.461749
NA YPTB1858 similar to V protein phage 186chromosome CDS2203663 816 - 0.493873
NA YPTB1345 putative glutathione S-transferase-family proteinchromosome CDS1604371 621 - 0.486312
NA YPTB3425 hypothetical proteinchromosome CDS4068500 717 + 0.493724
NA YPTB3050 hypothetical proteinchromosome CDS3602096 636 + 0.47956
NA YPTB3773 hypothetical proteinchromosome CDS4477394 576 + 0.46875
NA YPTB1026 putative thioredoxinchromosome CDS1233053 870 - 0.508046
NA YPTB0133 putative magnesium chelatase family proteinchromosome CDS163475 1524 - 0.534777
NA YPTB3863 hypothetical proteinchromosome CDS4615368 408 - 0.441176
NA YPTB0161 hypothetical proteinchromosome CDS192049 792 - 0.340909
NA YPTB2084 methionine sulfoxide reductase Bchromosome CDS2455788 414 + 0.454106
NA YPTB2806 putative HSP 70 family heat shock proteinchromosome CDS3313107 1356 + 0.550147
NA YPTB0494 hypothetical proteinchromosome CDS583993 879 - 0.507395
NA YPTB2820 putative proteasechromosome CDS3334795 1395 + 0.496057
NA YPTB0214 hypothetical proteinchromosome CDS256913 255 + 0.513726
NA YPTB2055 hypothetical proteinchromosome CDS2421389 699 + 0.549356
NA YPTB2313 hypothetical proteinchromosome CDS2729772 1512 - 0.494709
NA YPTB2286 hypothetical proteinchromosome CDS2696737 1113 - 0.520216
NA YPTB3225 hypothetical proteinchromosome CDS3797766 273 + 0.410256
NA YPTB1850 gpR [Enterobacteria phage P2] sp|P36933|VPR_BPP2 TAIL COMPLE...chromosome CDS2199189 468 - 0.452991
NA YPTB2297 hypothetical proteinchromosome CDS2710267 351 - 0.461538
NA YPTB2312 putative ATP-dependent transporterchromosome CDS2728841 747 - 0.453815
NA YPTB1024 hypothetical proteinchromosome CDS1231492 450 - 0.506667
NA YPTB1025 hypothetical proteinchromosome CDS1231944 915 - 0.469945
NA YPTB0332 hypothetical proteinchromosome CDS397288 270 + 0.551852
NA YPTB2641 putative cytochrome c-type biogenesis proteinchromosome CDS3120784 1227 - 0.496333
NA YPTB3484 hypothetical proteinchromosome CDS4151420 381 + 0.464567
NA YPTB0538 M48 peptidase family proteinchromosome CDS636271 1047 - 0.5234
NA YPTB3770 hypothetical proteinchromosome CDS4475331 270 - 0.440741
NA YPTB2311 hypothetical proteinchromosome CDS2727541 1326 - 0.499246
NA YPTB3055 Prepilin peptidasechromosome CDS3606313 843 - 0.357058
NA YPTB3728 hypothetical proteinchromosome CDS4421965 408 - 0.490196
GrpE YPTB1141 heat shock protein GrpEchromosome CDS1364652 579 + 0.476684
aat YPTB1396 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1662663 711 - 0.495077
ahpC YPTB0925 putative alkyl hydroperoxide reductase subunit Cchromosome CDS1118856 603 - 0.470978
bcp YPTB2785 bacterioferritin comigratory proteinchromosome CDS3288865 471 + 0.443737
btuE YPTB2332 putative ABC vitamin B12 transporter, periplasmic binding proteinproteinchromosome CDS2755132 555 - 0.445045
ccmA YPTB2649 putative ABC type heme exporter, ATP binding subunit ccmAchromosome CDS3127316 657 - 0.491629
ccmB YPTB2648 ABC type heme exporter, permease subunit ccmBchromosome CDS3126687 660 - 0.516667
ccmC YPTB2647 putative ABC type heme exporter, permease subunit ccmCchromosome CDS3125887 738 - 0.501355
ccmE YPTB2645 putative cytochrome c-type biogenesis proteinchromosome CDS3125049 495 - 0.511111
ccmF YPTB2644 putative cytochrome c-type biogenesis proteinchromosome CDS3123082 1971 - 0.524099
ccmG YPTB2643 thiol:disulfide interchange protein DsbEchromosome CDS3122519 567 - 0.497355
ccmH YPTB2642 putative cytochrome c-type biogenesis proteinchromosome CDS3122010 513 - 0.465887
clpA YPTB1394 ATP-dependent Clp protease ATP-binding subunitchromosome CDS1659590 2277 + 0.494071
clpB YPTB0848 ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpEchromosome CDS1015663 2574 + 0.479798
clpB YPTB0647 putative ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpEchromosome CDS766349 2604 + 0.53341
clpB2 YPTB3629 Clp ATPasechromosome CDS4321976 2604 - 0.529186
clpB3 YPTB1489 Clp ATPasechromosome CDS1782551 2649 + 0.584749
clpB3 YPTB3246 Clp ATPasechromosome CDS3823069 2649 - 0.592299
clpB5 YPTB2671 Clp ATPasechromosome CDS3154431 2658 - 0.481565
clpP YPTB0959 ATP-dependent Clp protease proteolytic subunitchromosome CDS1152879 624 + 0.461538
clpX YPTB0960 ATP-dependent protease ATP-binding subunitchromosome CDS1153708 1272 + 0.482704
cydC YPTB1397 putative ABC cytochrome efflux transporter, fused ATP-binding and permease domainschromosome CDS1663592 1725 - 0.514203
cydD YPTB1398 putative ABC cytochrome efflux transporter, fused ATP-binding and permease domainschromosome CDS1665319 1785 - 0.508123
cyoE YPTB0948 protoheme IX farnesyltransferasechromosome CDS1141636 891 - 0.465769
cysT YPTB2734 ABC sulfate transporter, permease subunit CysTchromosome CDS3232582 834 - 0.539568
degQ YPTB3511 Proteasechromosome CDS4180382 1374 + 0.487627
degS YPTB3512 Proteasechromosome CDS4181845 1089 + 0.481175
djlA YPTB0637 Dna-J like membrane chaperone proteinchromosome CDS755134 834 + 0.504796
dnaJ YPTB0612 heat shock protein, DnaJ and GrpE stimulates ATPase activity of DnaKchromosome CDS726671 1140 + 0.499123
dnaK YPTB0611 molecular chaperone DnaKchromosome CDS724649 1911 + 0.47933
dsbA YPTB0017 secreted thiol:disulfide interchange protein DsbAchromosome CDS21869 624 + 0.421474
dsbB YPTB2070 disulfide bond formation protein Bchromosome CDS2437078 531 - 0.463277
dsbC YPTB3166 thiol:disulfide interchange protein (DsbC)chromosome CDS3724229 717 - 0.456067
dsbD YPTB0399 thiol:disulfide interchange protein precursorchromosome CDS476373 1788 - 0.520694
fdhE YPTB3930 formate dehydrogenase accessory protein FdhEchromosome CDS4692802 930 + 0.496774
fklB YPTB0444 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS526650 621 + 0.521739
fkpA YPTB3710 peptidyl-prolyl cis-trans isomerasechromosome CDS4405391 801 - 0.456929
fkpB YPTB0619 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS735438 459 + 0.48366
flgA YPTB3341 flagellar basal body P-ring biosynthesis proteinchromosome CDS3973294 819 + 0.498168
flgA YPTB1671 flagellar basal body P-ring biosynthesis proteinchromosome CDS2024781 699 - 0.522175
flgJ YPTB1680 flagellar biosynthesis proteinchromosome CDS2032272 945 + 0.540741
flgJ YPTB3332 putative flagellar proteinchromosome CDS3966598 294 - 0.496599
flgN YPTB1669 flagella synthesis protein FlgNchromosome CDS2023869 441 - 0.485261
fliJ YPTB1699 flagellar proteinchromosome CDS2053183 447 - 0.478747
fliS YPTB1712 flagellar protein FliSchromosome CDS2066143 399 - 0.471178
fliS YPTB3324 putative flagellar proteinchromosome CDS3957802 384 - 0.388021
fliT YPTB1711 FliTchromosome CDS2065770 363 - 0.424242
ftsH YPTB0474 cell division proteinchromosome CDS557998 1935 + 0.469251
gcp YPTB3415 putative O-sialoglycoprotein endopeptidase (glycoprotease)chromosome CDS4056331 1014 - 0.518738
glnD YPTB3005 PII uridylyl-transferasechromosome CDS3544063 2682 + 0.48956
glnE YPTB3408 probable glutamate-ammonia-ligase adenylyltransferase (ATASE)chromosome CDS4046990 2856 - 0.528011
groEL YPTB0405 chaperonin GroELchromosome CDS483158 1647 + 0.508197
groES YPTB0404 co-chaperonin GroESchromosome CDS482818 294 + 0.489796
grxA YPTB1358 glutaredoxin 1chromosome CDS1620307 264 - 0.439394
grxC YPTB0062 glutaredoxinchromosome CDS75018 249 + 0.514056
gst YPTB2281 glutathione S-transferasechromosome CDS2692485 606 + 0.453795
hflC YPTB0428 hypothetical proteinchromosome CDS512442 1005 + 0.502488
hflK YPTB0427 hypothetical proteinchromosome CDS511176 1263 + 0.501979
hscA YPTB2855 chaperone protein HscAchromosome CDS3380567 1935 - 0.547287
hscB YPTB2856 co-chaperone HscBchromosome CDS3382744 525 - 0.504762
hslJ YPTB2249 putative heat shock proteinchromosome CDS2656771 453 + 0.437086
hslO YPTB3761 Hsp33-like chaperoninchromosome CDS4463099 882 + 0.49093
hslU YPTB0097 ATP-dependent protease ATP-binding subunitchromosome CDS109151 1332 - 0.491742
hslV YPTB0098 ATP-dependent protease peptidase subunitchromosome CDS110553 525 - 0.487619
htpG YPTB0995 heat shock protein 90chromosome CDS1194468 1875 + 0.464
htpX YPTB2375 heat shock protein HtpXchromosome CDS2800050 882 - 0.470522
htrA YPTB0749 periplasmic serine protease Do, heat shock proteinchromosome CDS900329 1446 + 0.496542
ibpA YPTB3904 heat shock proteinchromosome CDS4659658 414 + 0.425121
ibpB YPTB3905 heat shock proteinchromosome CDS4660352 465 + 0.488172
lon YPTB0961 DNA-binding, ATP-dependent protease la; cleaves RcsA and SulA, heat shock k-proteinchromosome CDS1155174 2355 + 0.483227
msrA YPTB0451 methionine sulfoxide reductase Achromosome CDS534155 639 - 0.532081
nrdG YPTB0518 anaerobic ribonucleotide reductase activating proteinchromosome CDS607050 435 - 0.51954
nrdH YPTB2955 putative glutaredoxinchromosome CDS3486897 237 + 0.447257
pcm YPTB0774 protein-L-isoaspartate O-methyltransferasechromosome CDS929033 627 + 0.491228
pcp YPTB2905 putative pyrrolidone-carboxylate peptidasechromosome CDS3436073 648 - 0.501543
pflA YPTB1406 pyruvate formate-lyase 1 activating enzymechromosome CDS1679108 735 - 0.466667
ppiA YPTB3734 peptidyl-prolyl cis-trans isomerase Achromosome CDS4429808 570 - 0.452632
ppiB YPTB1034 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1241558 495 - 0.466667
ppiC YPTB0162 peptidyl-prolyl cis-trans isomerasechromosome CDS193079 282 - 0.450355
ppiD YPTB0963 peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteinschromosome CDS1158319 1887 + 0.45522
ptrA YPTB3026 protease III precursorchromosome CDS3571474 2889 - 0.467636
radA YPTB0587 putative ATP-dependent protease, DNA repair proteinchromosome CDS691085 1383 + 0.547361
rcsC YPTB0881 putative accessory processing protein; involved in the adherence of host cellschromosome CDS1063502 1854 + 0.451456
slyD YPTB3712 peptidyl-prolyl cis-trans isomerasechromosome CDS4406945 594 - 0.523569
smpB YPTB1135 SsrA-binding proteinchromosome CDS1359940 483 - 0.459627
sohB YPTB2138 peptidase family U7 proteinchromosome CDS2513405 1047 + 0.483286
sppA YPTB2088 protease IVchromosome CDS2458473 1851 - 0.479741
sspA YPTB3506 stringent starvation protein Achromosome CDS4176192 642 - 0.487539
surA YPTB0635 peptidyl-prolyl cis-trans isomerase, survival proteinchromosome CDS751235 1305 - 0.488123
tig YPTB0958 trigger factorchromosome CDS1151113 1305 + 0.471264
tpx YPTB2261 thiol peroxidasechromosome CDS2672155 504 + 0.492063
trxA YPTB0166 thioredoxin 1chromosome CDS198658 327 + 0.464832
trxB YPTB1399 thioredoxin reductasechromosome CDS1667544 963 - 0.515057
trxC YPTB0853 thioredoxin 2, redox factorchromosome CDS1029945 438 - 0.502283
ureD YPTB2938 possible urease accessory proteinchromosome CDS3470589 966 - 0.480331
ureE YPTB2941 urease accessory proteinchromosome CDS3473048 696 - 0.497126
ureF YPTB2940 urease accessory proteinchromosome CDS3472340 687 - 0.489083
ureG YPTB2939 urease accessory proteinchromosome CDS3471551 663 - 0.488688
ygcF YPTB0757 putative coenzyme PQQ synthesis protein, nitrogenase iron-molybdenum domainchromosome CDS912772 672 + 0.491071
yghU YPTB3590 putative glutathione S-transferasechromosome CDS4270434 855 + 0.492398
yqjG YPTB3489 possible glutathione S-transferase.chromosome CDS4153724 987 + 0.495441