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2024-05-13 04:52:23
Summary for Yersinia pestis CO92, CO92.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Yersinia pestis CO92, CO92
Genomic elements1 chromosomes(s), 3 circular plasmid(s)
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Genome featuresCDS:
4066 genes, length ø 951 bp, gc-content ø 0.479
 
'+'-strand:
2050 genes, length ø 932 bp, gc-content ø 0.48
 
'-'-strand:
2016 genes, length ø 970 bp, gc-content ø 0.478
 
RBS:
203 genes, length ø 4 bp, gc-content ø 0.653
 
'+'-strand:
102 genes, length ø 4 bp, gc-content ø 0.666
 
'-'-strand:
101 genes, length ø 4 bp, gc-content ø 0.641
 
misc_RNA:
8 genes, length ø 207 bp, gc-content ø 0.499
 
'+'-strand:
5 genes, length ø 204 bp, gc-content ø 0.484
 
'-'-strand:
3 genes, length ø 213 bp, gc-content ø 0.524
 
misc_feature:
9397 genes, length ø 289 bp, gc-content ø 0.495
 
'+'-strand:
4559 genes, length ø 338 bp, gc-content ø 0.496
 
'-'-strand:
4838 genes, length ø 243 bp, gc-content ø 0.494
 
promoter:
1 genes, length ø 102 bp, gc-content ø 0.264
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
1 genes, length ø 102 bp, gc-content ø 0.264
 
pseudo:
574 genes, length ø 880 bp, gc-content ø 0.475
 
'+'-strand:
266 genes, length ø 873 bp, gc-content ø 0.485
 
'-'-strand:
308 genes, length ø 886 bp, gc-content ø 0.467
 
rRNA:
19 genes, length ø 1468 bp, gc-content ø 0.529
 
'+'-strand:
6 genes, length ø 1540 bp, gc-content ø 0.528
 
'-'-strand:
13 genes, length ø 1434 bp, gc-content ø 0.53
 
rep_origin:
4 genes, length ø 1158 bp, gc-content ø 0.486
 
'+'-strand:
2 genes, length ø 1581 bp, gc-content ø 0.516
 
'-'-strand:
2 genes, length ø 734 bp, gc-content ø 0.456
 
repeat_region:
124 genes, length ø 335 bp, gc-content ø 0.482
 
'+'-strand:
83 genes, length ø 234 bp, gc-content ø 0.48
 
'-'-strand:
41 genes, length ø 540 bp, gc-content ø 0.486
 
repeat_unit:
7 genes, length ø 1648 bp, gc-content ø 0.352
 
'+'-strand:
5 genes, length ø 2135 bp, gc-content ø 0.354
 
'-'-strand:
2 genes, length ø 431 bp, gc-content ø 0.345
 
stem_loop:
1 genes, length ø 60 bp, gc-content ø 0.516
 
'+'-strand:
1 genes, length ø 60 bp, gc-content ø 0.516
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
tRNA:
69 genes, length ø 78 bp, gc-content ø 0.583
 
'+'-strand:
20 genes, length ø 77 bp, gc-content ø 0.582
 
'-'-strand:
49 genes, length ø 78 bp, gc-content ø 0.583
 
variation:
3 genes, length ø 1 bp, gc-content ø 0
 
'+'-strand:
3 genes, length ø 1 bp, gc-content ø 0
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]369
Carbohydrate transport and metabolism [G]343
Cell cycle control, mitosis and meiosis [D]42
Cell motility [N]135
Cell wall/membrane biogenesis [M]201
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]142
Cytoskeleton [Z]0
Defense mechanisms [V]46
Energy production and conversion [C]191
Extracellular structures [W]7
Function unknown [S]364
General function prediction only [R]408
Inorganic ion transport and metabolism [P]258
Intracellular trafficking and secretion [U]163
Lipid transport and metabolism [I]88
NOT ANALYZED10402
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]73
Posttranslational modification, protein turnover, chaperones [O]138
RNA processing and modification [A]1
Replication, recombination and repair [L]385
Secondary metabolites biosynthesis, transport and catabolism [Q]76
Signal transduction mechanisms [T]130
Transcription [K]258
Translation, ribosomal structure and biogenesis [J]186
Unclassified [-]627