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2024-05-13 15:11:05
Summary for Salmonella typhimurium LT2, SGSC1412.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Salmonella typhimurium LT2, SGSC1412
Genomic elements1 circular plasmid(s)
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Genome features-10_signal:
3 genes, length ø 6 bp, gc-content ø 0.333
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
3 genes, length ø 6 bp, gc-content ø 0.333
 
-35_signal:
3 genes, length ø 6 bp, gc-content ø 0.444
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
3 genes, length ø 6 bp, gc-content ø 0.444
 
CDS:
102 genes, length ø 734 bp, gc-content ø 0.53
 
'+'-strand:
71 genes, length ø 721 bp, gc-content ø 0.537
 
'-'-strand:
31 genes, length ø 762 bp, gc-content ø 0.515
 
RBS:
3 genes, length ø 4 bp, gc-content ø 0.555
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
3 genes, length ø 4 bp, gc-content ø 0.555
 
misc_RNA:
1 genes, length ø 133 bp, gc-content ø 0.413
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
1 genes, length ø 133 bp, gc-content ø 0.413
 
misc_feature:
13 genes, length ø 452 bp, gc-content ø 0.531
 
'+'-strand:
9 genes, length ø 516 bp, gc-content ø 0.534
 
'-'-strand:
4 genes, length ø 309 bp, gc-content ø 0.525
 
misc_signal:
1 genes, length ø 19 bp, gc-content ø 0.368
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
1 genes, length ø 19 bp, gc-content ø 0.368
 
protein_bind:
1 genes, length ø 16 bp, gc-content ø 0.312
 
'+'-strand:
1 genes, length ø 16 bp, gc-content ø 0.312
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
repeat_region:
2 genes, length ø 38 bp, gc-content ø 0.256
 
'+'-strand:
1 genes, length ø 51 bp, gc-content ø 0.313
 
'-'-strand:
1 genes, length ø 25 bp, gc-content ø 0.2
 
stem_loop:
1 genes, length ø 54 bp, gc-content ø 0.666
 
'+'-strand:
1 genes, length ø 54 bp, gc-content ø 0.666
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]0
Carbohydrate transport and metabolism [G]1
Cell cycle control, mitosis and meiosis [D]2
Cell motility [N]2
Cell wall/membrane biogenesis [M]3
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]0
Cytoskeleton [Z]0
Defense mechanisms [V]1
Energy production and conversion [C]1
Extracellular structures [W]0
Function unknown [S]4
General function prediction only [R]2
Inorganic ion transport and metabolism [P]1
Intracellular trafficking and secretion [U]5
Lipid transport and metabolism [I]1
NOT ANALYZED27
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]0
Posttranslational modification, protein turnover, chaperones [O]2
RNA processing and modification [A]0
Replication, recombination and repair [L]12
Secondary metabolites biosynthesis, transport and catabolism [Q]0
Signal transduction mechanisms [T]4
Transcription [K]6
Translation, ribosomal structure and biogenesis [J]1
Unclassified [-]60