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2024-05-13 19:20:52
Summary for Shigella flexneri 2a str. 301, 301.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Shigella flexneri 2a str. 301, 301
Genomic elements1 chromosomes(s), 1 circular plasmid(s)
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Genome featuresCDS:
4443 genes, length ø 870 bp, gc-content ø 0.511
 
'+'-strand:
2208 genes, length ø 879 bp, gc-content ø 0.51
 
'-'-strand:
2235 genes, length ø 861 bp, gc-content ø 0.511
 
misc_RNA:
10 genes, length ø 201 bp, gc-content ø 0.493
 
'+'-strand:
6 genes, length ø 178 bp, gc-content ø 0.482
 
'-'-strand:
4 genes, length ø 235 bp, gc-content ø 0.51
 
misc_feature:
62 genes, length ø 6883 bp, gc-content ø 0.472
 
'+'-strand:
62 genes, length ø 6883 bp, gc-content ø 0.472
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
pseudo:
522 genes, length ø 1377 bp, gc-content ø 0.506
 
'+'-strand:
280 genes, length ø 1391 bp, gc-content ø 0.505
 
'-'-strand:
242 genes, length ø 1360 bp, gc-content ø 0.507
 
rRNA:
22 genes, length ø 1457 bp, gc-content ø 0.577
 
'+'-strand:
15 genes, length ø 1521 bp, gc-content ø 0.574
 
'-'-strand:
7 genes, length ø 1321 bp, gc-content ø 0.581
 
repeat_region:
402 genes, length ø 967 bp, gc-content ø 0.515
 
'+'-strand:
218 genes, length ø 971 bp, gc-content ø 0.512
 
'-'-strand:
184 genes, length ø 961 bp, gc-content ø 0.517
 
tRNA:
97 genes, length ø 78 bp, gc-content ø 0.587
 
'+'-strand:
54 genes, length ø 77 bp, gc-content ø 0.588
 
'-'-strand:
43 genes, length ø 79 bp, gc-content ø 0.585
 
COG categories 
Amino acid transport and metabolism [E]376
Carbohydrate transport and metabolism [G]356
Cell cycle control, mitosis and meiosis [D]45
Cell motility [N]80
Cell wall/membrane biogenesis [M]223
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]146
Cytoskeleton [Z]0
Defense mechanisms [V]45
Energy production and conversion [C]260
Extracellular structures [W]3
Function unknown [S]309
General function prediction only [R]470
Inorganic ion transport and metabolism [P]244
Intracellular trafficking and secretion [U]107
Lipid transport and metabolism [I]94
NOT ANALYZED1107
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]79
Posttranslational modification, protein turnover, chaperones [O]141
RNA processing and modification [A]5
Replication, recombination and repair [L]815
Secondary metabolites biosynthesis, transport and catabolism [Q]76
Signal transduction mechanisms [T]143
Transcription [K]271
Translation, ribosomal structure and biogenesis [J]180
Unclassified [-]558