TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-13 14:55:37
Summary for Photorhabdus luminescens subsp. laumondii TTO1, TTO1.
Add a genome
Remove a genome
 
chr: chromosome(s), pl: plasmid(s), seg: segment(s)
Free access

 

 Photorhabdus luminescens subsp. laumondii TTO1, TTO1
Genomic elements1 chromosomes(s)
Show details
 
Genome featuresCDS:
4683 genes, length ø 985 bp, gc-content ø 0.43
 
'+'-strand:
2137 genes, length ø 949 bp, gc-content ø 0.429
 
'-'-strand:
2546 genes, length ø 1014 bp, gc-content ø 0.431
 
RBS:
3153 genes, length ø 6 bp, gc-content ø 0.54
 
'+'-strand:
1433 genes, length ø 6 bp, gc-content ø 0.537
 
'-'-strand:
1720 genes, length ø 6 bp, gc-content ø 0.542
 
pseudo:
444 genes, length ø 682 bp, gc-content ø 0.443
 
'+'-strand:
208 genes, length ø 889 bp, gc-content ø 0.451
 
'-'-strand:
236 genes, length ø 499 bp, gc-content ø 0.436
 
rRNA:
22 genes, length ø 1470 bp, gc-content ø 0.578
 
'+'-strand:
12 genes, length ø 1533 bp, gc-content ø 0.578
 
'-'-strand:
10 genes, length ø 1395 bp, gc-content ø 0.579
 
tRNA:
85 genes, length ø 77 bp, gc-content ø 0.579
 
'+'-strand:
41 genes, length ø 77 bp, gc-content ø 0.571
 
'-'-strand:
44 genes, length ø 78 bp, gc-content ø 0.586
 
terminator:
436 genes, length ø 22 bp, gc-content ø 0.566
 
'+'-strand:
208 genes, length ø 23 bp, gc-content ø 0.567
 
'-'-strand:
228 genes, length ø 22 bp, gc-content ø 0.565
 
COG categories 
Amino acid transport and metabolism [E]391
Carbohydrate transport and metabolism [G]228
Cell cycle control, mitosis and meiosis [D]64
Cell motility [N]114
Cell wall/membrane biogenesis [M]222
Chromatin structure and dynamics [B]1
Coenzyme transport and metabolism [H]180
Cytoskeleton [Z]4
Defense mechanisms [V]71
Energy production and conversion [C]182
Extracellular structures [W]5
Function unknown [S]375
General function prediction only [R]503
Inorganic ion transport and metabolism [P]213
Intracellular trafficking and secretion [U]150
Lipid transport and metabolism [I]123
NOT ANALYZED4140
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]86
Posttranslational modification, protein turnover, chaperones [O]134
RNA processing and modification [A]1
Replication, recombination and repair [L]321
Secondary metabolites biosynthesis, transport and catabolism [Q]147
Signal transduction mechanisms [T]153
Transcription [K]328
Translation, ribosomal structure and biogenesis [J]198
Unclassified [-]1085