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2024-05-12 21:47:12
Summary for Yersinia pestis biovar Microtus str. 91001, 91001.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Yersinia pestis biovar Microtus str. 91001, 91001
Genomic elements1 chromosomes(s), 4 circular plasmid(s)
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Genome featuresCDS:
4142 genes, length ø 945 bp, gc-content ø 0.478
 
'+'-strand:
2071 genes, length ø 932 bp, gc-content ø 0.476
 
'-'-strand:
2071 genes, length ø 959 bp, gc-content ø 0.479
 
misc_RNA:
8 genes, length ø 205 bp, gc-content ø 0.501
 
'+'-strand:
4 genes, length ø 184 bp, gc-content ø 0.519
 
'-'-strand:
4 genes, length ø 227 bp, gc-content ø 0.483
 
misc_feature:
5124 genes, length ø 109 bp, gc-content ø 0.482
 
'+'-strand:
2470 genes, length ø 108 bp, gc-content ø 0.481
 
'-'-strand:
2654 genes, length ø 111 bp, gc-content ø 0.483
 
pseudo:
230 genes, length ø 964 bp, gc-content ø 0.471
 
'+'-strand:
117 genes, length ø 944 bp, gc-content ø 0.457
 
'-'-strand:
113 genes, length ø 984 bp, gc-content ø 0.485
 
rRNA:
22 genes, length ø 1478 bp, gc-content ø 0.53
 
'+'-strand:
9 genes, length ø 1543 bp, gc-content ø 0.527
 
'-'-strand:
13 genes, length ø 1433 bp, gc-content ø 0.532
 
rep_origin:
1 genes, length ø 151 bp, gc-content ø 0.357
 
'+'-strand:
1 genes, length ø 151 bp, gc-content ø 0.357
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
repeat_region:
510 genes, length ø 341 bp, gc-content ø 0.401
 
'+'-strand:
444 genes, length ø 213 bp, gc-content ø 0.389
 
'-'-strand:
66 genes, length ø 1207 bp, gc-content ø 0.484
 
tRNA:
72 genes, length ø 78 bp, gc-content ø 0.582
 
'+'-strand:
33 genes, length ø 78 bp, gc-content ø 0.595
 
'-'-strand:
39 genes, length ø 77 bp, gc-content ø 0.571
 
variation:
6 genes, length ø 1 bp, gc-content ø 0.25
 
'+'-strand:
6 genes, length ø 1 bp, gc-content ø 0.25
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]375
Carbohydrate transport and metabolism [G]345
Cell cycle control, mitosis and meiosis [D]44
Cell motility [N]136
Cell wall/membrane biogenesis [M]204
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]140
Cytoskeleton [Z]0
Defense mechanisms [V]51
Energy production and conversion [C]193
Extracellular structures [W]5
Function unknown [S]358
General function prediction only [R]412
Inorganic ion transport and metabolism [P]259
Intracellular trafficking and secretion [U]169
Lipid transport and metabolism [I]88
NOT ANALYZED5958
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]79
Posttranslational modification, protein turnover, chaperones [O]137
RNA processing and modification [A]1
Replication, recombination and repair [L]352
Secondary metabolites biosynthesis, transport and catabolism [Q]77
Signal transduction mechanisms [T]137
Transcription [K]265
Translation, ribosomal structure and biogenesis [J]188
Unclassified [-]716