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2024-05-12 20:34:09
Summary for Yersinia pseudotuberculosis IP 32953, IP32953.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Yersinia pseudotuberculosis IP 32953, IP32953
Genomic elements1 chromosomes(s)
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Genome featuresCDS:
3901 genes, length ø 1004 bp, gc-content ø 0.48
 
'+'-strand:
1907 genes, length ø 1001 bp, gc-content ø 0.479
 
'-'-strand:
1994 genes, length ø 1006 bp, gc-content ø 0.48
 
misc_RNA:
15 genes, length ø 221 bp, gc-content ø 0.477
 
'+'-strand:
8 genes, length ø 191 bp, gc-content ø 0.493
 
'-'-strand:
7 genes, length ø 255 bp, gc-content ø 0.459
 
misc_feature:
1017 genes, length ø 575 bp, gc-content ø 0.478
 
'+'-strand:
494 genes, length ø 583 bp, gc-content ø 0.478
 
'-'-strand:
523 genes, length ø 567 bp, gc-content ø 0.478
 
pseudo:
154 genes, length ø 681 bp, gc-content ø 0.463
 
'+'-strand:
57 genes, length ø 642 bp, gc-content ø 0.44
 
'-'-strand:
97 genes, length ø 704 bp, gc-content ø 0.477
 
rRNA:
21 genes, length ø 1537 bp, gc-content ø 0.529
 
'+'-strand:
15 genes, length ø 1538 bp, gc-content ø 0.529
 
'-'-strand:
6 genes, length ø 1537 bp, gc-content ø 0.53
 
sig_peptide:
835 genes, length ø 88 bp, gc-content ø 0.454
 
'+'-strand:
373 genes, length ø 88 bp, gc-content ø 0.453
 
'-'-strand:
462 genes, length ø 89 bp, gc-content ø 0.455
 
tRNA:
85 genes, length ø 78 bp, gc-content ø 0.58
 
'+'-strand:
53 genes, length ø 77 bp, gc-content ø 0.584
 
'-'-strand:
32 genes, length ø 79 bp, gc-content ø 0.572
 
COG categories 
Amino acid transport and metabolism [E]383
Carbohydrate transport and metabolism [G]355
Cell cycle control, mitosis and meiosis [D]45
Cell motility [N]130
Cell wall/membrane biogenesis [M]209
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]143
Cytoskeleton [Z]0
Defense mechanisms [V]56
Energy production and conversion [C]199
Extracellular structures [W]5
Function unknown [S]358
General function prediction only [R]446
Inorganic ion transport and metabolism [P]265
Intracellular trafficking and secretion [U]156
Lipid transport and metabolism [I]87
NOT ANALYZED2121
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]78
Posttranslational modification, protein turnover, chaperones [O]143
RNA processing and modification [A]1
Replication, recombination and repair [L]200
Secondary metabolites biosynthesis, transport and catabolism [Q]82
Signal transduction mechanisms [T]138
Transcription [K]256
Translation, ribosomal structure and biogenesis [J]192
Unclassified [-]548