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2024-05-13 16:03:05
Summary for Shigella boydii Sb227, Sb227.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Shigella boydii Sb227, Sb227
Genomic elements1 chromosomes(s), 1 circular plasmid(s)
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Genome featuresCDS:
4284 genes, length ø 871 bp, gc-content ø 0.515
 
'+'-strand:
2136 genes, length ø 885 bp, gc-content ø 0.514
 
'-'-strand:
2148 genes, length ø 858 bp, gc-content ø 0.516
 
pseudo:
224 genes, length ø 1349 bp, gc-content ø 0.51
 
'+'-strand:
103 genes, length ø 1406 bp, gc-content ø 0.507
 
'-'-strand:
121 genes, length ø 1301 bp, gc-content ø 0.512
 
rRNA:
22 genes, length ø 1457 bp, gc-content ø 0.576
 
'+'-strand:
22 genes, length ø 1457 bp, gc-content ø 0.576
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
repeat_region:
475 genes, length ø 921 bp, gc-content ø 0.519
 
'+'-strand:
229 genes, length ø 930 bp, gc-content ø 0.52
 
'-'-strand:
246 genes, length ø 913 bp, gc-content ø 0.518
 
tRNA:
91 genes, length ø 78 bp, gc-content ø 0.589
 
'+'-strand:
54 genes, length ø 77 bp, gc-content ø 0.59
 
'-'-strand:
37 genes, length ø 78 bp, gc-content ø 0.588
 
COG categories 
Amino acid transport and metabolism [E]378
Carbohydrate transport and metabolism [G]299
Cell cycle control, mitosis and meiosis [D]39
Cell motility [N]61
Cell wall/membrane biogenesis [M]217
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]145
Cytoskeleton [Z]0
Defense mechanisms [V]43
Energy production and conversion [C]239
Extracellular structures [W]4
Function unknown [S]314
General function prediction only [R]437
Inorganic ion transport and metabolism [P]249
Intracellular trafficking and secretion [U]81
Lipid transport and metabolism [I]84
NOT ANALYZED812
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]75
Posttranslational modification, protein turnover, chaperones [O]139
RNA processing and modification [A]4
Replication, recombination and repair [L]725
Secondary metabolites biosynthesis, transport and catabolism [Q]70
Signal transduction mechanisms [T]158
Transcription [K]262
Translation, ribosomal structure and biogenesis [J]178
Unclassified [-]600