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2024-05-13 12:28:20
Summary for Yersinia pestis Nepal516, Nepal516.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Yersinia pestis Nepal516, Nepal516
Genomic elements1 chromosomes(s), 2 circular plasmid(s)
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Genome featuresCDS:
4094 genes, length ø 950 bp, gc-content ø 0.479
 
'+'-strand:
1940 genes, length ø 945 bp, gc-content ø 0.48
 
'-'-strand:
2154 genes, length ø 955 bp, gc-content ø 0.479
 
misc_RNA:
14 genes, length ø 211 bp, gc-content ø 0.483
 
'+'-strand:
9 genes, length ø 207 bp, gc-content ø 0.487
 
'-'-strand:
5 genes, length ø 218 bp, gc-content ø 0.475
 
misc_feature:
1 genes, length ø 338 bp, gc-content ø 0.467
 
'+'-strand:
1 genes, length ø 338 bp, gc-content ø 0.467
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
pseudo:
4 genes, length ø 181 bp, gc-content ø 0.502
 
'+'-strand:
1 genes, length ø 384 bp, gc-content ø 0.546
 
'-'-strand:
3 genes, length ø 114 bp, gc-content ø 0.487
 
rRNA:
21 genes, length ø 1552 bp, gc-content ø 0.528
 
'+'-strand:
15 genes, length ø 1552 bp, gc-content ø 0.528
 
'-'-strand:
6 genes, length ø 1552 bp, gc-content ø 0.529
 
sig_peptide:
691 genes, length ø 85 bp, gc-content ø 0.457
 
'+'-strand:
310 genes, length ø 85 bp, gc-content ø 0.456
 
'-'-strand:
381 genes, length ø 85 bp, gc-content ø 0.458
 
tRNA:
71 genes, length ø 78 bp, gc-content ø 0.583
 
'+'-strand:
37 genes, length ø 77 bp, gc-content ø 0.584
 
'-'-strand:
34 genes, length ø 79 bp, gc-content ø 0.582
 
COG categories 
Amino acid transport and metabolism [E]376
Carbohydrate transport and metabolism [G]352
Cell cycle control, mitosis and meiosis [D]44
Cell motility [N]138
Cell wall/membrane biogenesis [M]207
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]143
Cytoskeleton [Z]0
Defense mechanisms [V]44
Energy production and conversion [C]189
Extracellular structures [W]3
Function unknown [S]359
General function prediction only [R]409
Inorganic ion transport and metabolism [P]264
Intracellular trafficking and secretion [U]125
Lipid transport and metabolism [I]90
NOT ANALYZED829
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]80
Posttranslational modification, protein turnover, chaperones [O]138
RNA processing and modification [A]0
Replication, recombination and repair [L]353
Secondary metabolites biosynthesis, transport and catabolism [Q]84
Signal transduction mechanisms [T]131
Transcription [K]253
Translation, ribosomal structure and biogenesis [J]187
Unclassified [-]638