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2024-05-13 04:49:09
Summary for Shigella flexneri 5 str. 8401, 8401.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Shigella flexneri 5 str. 8401, 8401
Genomic elements1 chromosomes(s)
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Genome featuresCDS:
4116 genes, length ø 898 bp, gc-content ø 0.513
 
'+'-strand:
2001 genes, length ø 905 bp, gc-content ø 0.513
 
'-'-strand:
2115 genes, length ø 891 bp, gc-content ø 0.513
 
pseudo:
199 genes, length ø 1494 bp, gc-content ø 0.512
 
'+'-strand:
105 genes, length ø 1518 bp, gc-content ø 0.512
 
'-'-strand:
94 genes, length ø 1467 bp, gc-content ø 0.511
 
rRNA:
22 genes, length ø 1458 bp, gc-content ø 0.576
 
'+'-strand:
9 genes, length ø 1522 bp, gc-content ø 0.574
 
'-'-strand:
13 genes, length ø 1413 bp, gc-content ø 0.578
 
repeat_region:
277 genes, length ø 1048 bp, gc-content ø 0.517
 
'+'-strand:
154 genes, length ø 1033 bp, gc-content ø 0.514
 
'-'-strand:
123 genes, length ø 1066 bp, gc-content ø 0.522
 
tRNA:
97 genes, length ø 78 bp, gc-content ø 0.586
 
'+'-strand:
49 genes, length ø 76 bp, gc-content ø 0.585
 
'-'-strand:
48 genes, length ø 79 bp, gc-content ø 0.587
 
COG categories 
Amino acid transport and metabolism [E]354
Carbohydrate transport and metabolism [G]308
Cell cycle control, mitosis and meiosis [D]38
Cell motility [N]95
Cell wall/membrane biogenesis [M]190
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]148
Cytoskeleton [Z]0
Defense mechanisms [V]23
Energy production and conversion [C]240
Extracellular structures [W]1
Function unknown [S]276
General function prediction only [R]405
Inorganic ion transport and metabolism [P]234
Intracellular trafficking and secretion [U]46
Lipid transport and metabolism [I]78
NOT ANALYZED745
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]74
Posttranslational modification, protein turnover, chaperones [O]126
RNA processing and modification [A]2
Replication, recombination and repair [L]540
Secondary metabolites biosynthesis, transport and catabolism [Q]78
Signal transduction mechanisms [T]133
Transcription [K]254
Translation, ribosomal structure and biogenesis [J]164
Unclassified [-]640